Clone Sequence Records
BS14548.5prime Sequence
468 bp (468 high quality bases) assembled on 2006-10-13
> BS14548.5prime
GAAGTTATCAGTCGACATGTTTTACGCATTCATAGCACTTGTTTTGGCCA
TGCTCCACCTGTCATTCGCAGTACAGGTGCAAACGGAGCACACCATTGTG
GAGGAATGGAGCTGGCAAGACCATCACAGCAACAGAGACTTGGGAAGCTA
TAACTACTACACAGCTCTAGATTATGATCAAAATTTCGACGGTGATGAGA
ATTCAAACGATAATGAATATGAAGAGGATGATGGCAGGGCTACTGCCGCC
GGCTTGGACCGGGATGAGGATCCGTGCGAGCGCAGCTGTCCCCGGTACTA
CCGGCCTGTCTGCATTCTCCGCAATGGCCGCAATATGACATTTGCCACGC
TCTGCGAGTTCCACAATCAAGTACGTTGTGCCAACGATCTAAGAAGACAA
GGTCATGGCTATGTGGTCCCCATCTTTCAATACCAACATGATGGTGGCTG
CTAAAAGCTTTCTAGACC
BS14548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13694-PA | 405 | CG13694-RA | 1..405 | 50..454 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13694-RB | 818 | CG13694-RB | 33..471 | 17..455 | 2195 | 100 | Plus |
CG13694-RA | 1124 | CG13694-RA | 339..777 | 17..455 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 115712..116150 | 455..17 | 2195 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:51:36 has no hits.
BS14548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:36 Download gff for
BS14548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-PA | 1..405 | 50..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:10 Download gff for
BS14548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 335..777 | 9..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:47 Download gff for
BS14548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 335..777 | 9..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:47 Download gff for
BS14548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 115712..116154 | 9..455 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:10 Download gff for
BS14548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 115712..116154 | 9..455 | 99 | | Minus |
BS14548.complete Sequence
470 bp assembled on 2006-11-01
GenBank Submission: FJ637699
> BS14548.complete
GAAGTTATCAGTCGACATGTTTTACGCATTCATAGCACTTGTTTTGGCCA
TGCTCCACCTGTCATTCGCAGTACAGGTGCAAACGGAGCACACCATTGTG
GAGGAATGGAGCTGGCAAGACCATCACAGCAACAGAGACTTGGGAAGCTA
TAACTACTACACAGCTCTAGATTATGATCAAAATTTCGACGGTGATGAGA
ATTCAAACGATAATGAATATGAAGAGGATGATGGCAGGGCTACTGCCGCC
GGCTTGGACCGGGATGAGGATCCGTGCGAGCGCAGCTGTCCCCGGTACTA
CCGGCCTGTCTGCATTCTCCGCAATGGCCGCAATATGACATTTGCCACGC
TCTGCGAGTTCCACAATCAAGTACGTTGTGCCAACGATCTAAGAAGACAA
GGTCATGGCTATGTGGTCCCCATCTTTCAATACCAACATGATGGTGGCTG
CTAAAAGCTTTCTAGACCAT
BS14548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13694-RB | 405 | CG13694-PB | 1..405 | 50..454 | 2025 | 100 | Plus |
CG13694-RA | 405 | CG13694-PA | 1..405 | 50..454 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13694-RB | 818 | CG13694-RB | 33..471 | 17..455 | 2195 | 100 | Plus |
CG13694-RA | 1124 | CG13694-RA | 339..777 | 17..455 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 115712..116150 | 455..17 | 2195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:36:43 has no hits.
BS14548.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:25 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 1..405 | 50..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:32 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 1..405 | 50..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:04 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 346..774 | 24..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:25 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 1..405 | 50..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:50 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13694-RA | 346..774 | 24..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:50 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 115715..116143 | 24..452 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:04 Download gff for
BS14548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 115715..116143 | 24..452 | 100 | | Minus |
BS14548.pep Sequence
Translation from 16 to 453
> BS14548.pep
MFYAFIALVLAMLHLSFAVQVQTEHTIVEEWSWQDHHSNRDLGSYNYYTA
LDYDQNFDGDENSNDNEYEEDDGRATAAGLDRDEDPCERSCPRYYRPVCI
LRNGRNMTFATLCEFHNQVRCANDLRRQGHGYVVPIFQYQHDGGC*
BS14548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13694-PB | 134 | CG13694-PB | 1..134 | 12..145 | 760 | 100 | Plus |
CG13694-PA | 134 | CG13694-PA | 1..134 | 12..145 | 760 | 100 | Plus |