Clone Sequence Records
BS14549.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS14549.5prime
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATTGAAAGCTTTCTAGACC
BS14549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-PA | 366 | CG14072-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 735 | CG14072-RC | 246..612 | 16..382 | 1835 | 100 | Plus |
CG14072-RB | 778 | CG14072-RB | 289..655 | 16..382 | 1835 | 100 | Plus |
CG14072-RA | 521 | CG14072-RA | 32..398 | 16..382 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10937514..10937808 | 88..382 | 1475 | 100 | Plus |
2L | 23513712 | 2L | 10937384..10937456 | 16..88 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:11:35 has no hits.
BS14549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:37 Download gff for
BS14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:46 Download gff for
BS14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..398 | 9..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:11 Download gff for
BS14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..398 | 9..382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:11 Download gff for
BS14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10937380..10937456 | 9..88 | 96 | -> | Plus |
2L | 10937515..10937808 | 89..382 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:46 Download gff for
BS14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10937380..10937456 | 9..88 | 96 | -> | Plus |
arm_2L | 10937515..10937808 | 89..382 | 100 | | Plus |
BS14549.3prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS14549.3prime
ATGGTCTAGAAAGCTTTCAATCTCCATTGCCAACAAACGCATCCTGCAGA
AAATCACCAAATGCATCTTCATCCATGAGTCCCATTTCATCCAGGAGCCA
CTTCTCGTGGTCAATGCCCCGCAATTCACACACGACCTTGAAGATTAATT
CCTCCTTTTGGGTGTAATAATCGGGCGAATCAAATTTGGTTGCCAGCAAA
TCGGCTTCCCGTTTGAATTGTAAGAGCTTGTCATGACGGTTTTGGCCGTC
ATCATTGCGTTCCTCGGCTGACTTAAGGGTGAGCATGGCCAGAAATTCCG
AGAGTTGAGACACATTCGATGGGCTACCACCCAGTAGGTTATCATCGTGG
GCAAACTCGACCGCATATTGTAGACCATCCATGTCGACTGATAACT
BS14549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-PA | 366 | CG14072-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 735 | CG14072-RC | 246..612 | 383..17 | 1835 | 100 | Minus |
CG14072-RB | 778 | CG14072-RB | 289..655 | 383..17 | 1835 | 100 | Minus |
CG14072-RA | 521 | CG14072-RA | 32..398 | 383..17 | 1835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10937514..10937808 | 311..17 | 1475 | 100 | Minus |
2L | 23513712 | 2L | 10937384..10937456 | 383..311 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:47:04 has no hits.
BS14549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:36 Download gff for
BS14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:11 Download gff for
BS14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..398 | 17..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:26 Download gff for
BS14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 28..398 | 17..390 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:26 Download gff for
BS14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10937380..10937456 | 311..390 | 96 | -> | Minus |
2L | 10937515..10937808 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:11 Download gff for
BS14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10937380..10937456 | 311..390 | 96 | -> | Minus |
arm_2L | 10937515..10937808 | 17..310 | 100 | | Minus |
BS14549.complete Sequence
398 bp assembled on 2006-11-01
GenBank Submission: FJ637700
> BS14549.complete
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATTGAAAGCTTTCTAGACCAT
BS14549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 366 | CG14072-PC | 1..366 | 17..382 | 1830 | 100 | Plus |
CG14072-RB | 366 | CG14072-PB | 1..366 | 17..382 | 1830 | 100 | Plus |
CG14072-RA | 366 | CG14072-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-RC | 735 | CG14072-RC | 246..612 | 16..382 | 1835 | 100 | Plus |
CG14072-RB | 778 | CG14072-RB | 289..655 | 16..382 | 1835 | 100 | Plus |
CG14072-RA | 521 | CG14072-RA | 32..398 | 16..382 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10937514..10937808 | 88..382 | 1475 | 100 | Plus |
2L | 23513712 | 2L | 10937384..10937456 | 16..88 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:25:34 has no hits.
BS14549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:26 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:34 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 47..417 | 9..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:55 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 33..397 | 17..381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:27 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 47..417 | 9..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:15 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14072-RA | 33..397 | 17..381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:15 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10937385..10937456 | 17..88 | 100 | -> | Plus |
2L | 10937515..10937807 | 89..381 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:55 Download gff for
BS14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10937385..10937456 | 17..88 | 100 | -> | Plus |
arm_2L | 10937515..10937807 | 89..381 | 100 | | Plus |
BS14549.pep Sequence
Translation from 16 to 381
> BS14549.pep
MDGLQYAVEFAHDDNLLGGSPSNVSQLSEFLAMLTLKSAEERNDDGQNRH
DKLLQFKREADLLATKFDSPDYYTQKEELIFKVVCELRGIDHEKWLLDEM
GLMDEDAFGDFLQDAFVGNGD*
BS14549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14072-PC | 121 | CG14072-PC | 1..121 | 1..121 | 634 | 100 | Plus |
CG14072-PB | 121 | CG14072-PB | 1..121 | 1..121 | 634 | 100 | Plus |
CG14072-PA | 121 | CG14072-PA | 1..121 | 1..121 | 634 | 100 | Plus |