Clone BS14549 Report

Search the DGRC for BS14549

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG14072-RA
Protein status:BS14549.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14549.5prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS14549.5prime
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATTGAAAGCTTTCTAGACC

BS14549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-PA 366 CG14072-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 735 CG14072-RC 246..612 16..382 1835 100 Plus
CG14072-RB 778 CG14072-RB 289..655 16..382 1835 100 Plus
CG14072-RA 521 CG14072-RA 32..398 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10937514..10937808 88..382 1475 100 Plus
2L 23513712 2L 10937384..10937456 16..88 365 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:11:35 has no hits.

BS14549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:37 Download gff for BS14549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-PA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:46 Download gff for BS14549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..398 9..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:11 Download gff for BS14549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..398 9..382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:11 Download gff for BS14549.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10937380..10937456 9..88 96 -> Plus
2L 10937515..10937808 89..382 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:46 Download gff for BS14549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10937380..10937456 9..88 96 -> Plus
arm_2L 10937515..10937808 89..382 100   Plus

BS14549.3prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS14549.3prime
ATGGTCTAGAAAGCTTTCAATCTCCATTGCCAACAAACGCATCCTGCAGA
AAATCACCAAATGCATCTTCATCCATGAGTCCCATTTCATCCAGGAGCCA
CTTCTCGTGGTCAATGCCCCGCAATTCACACACGACCTTGAAGATTAATT
CCTCCTTTTGGGTGTAATAATCGGGCGAATCAAATTTGGTTGCCAGCAAA
TCGGCTTCCCGTTTGAATTGTAAGAGCTTGTCATGACGGTTTTGGCCGTC
ATCATTGCGTTCCTCGGCTGACTTAAGGGTGAGCATGGCCAGAAATTCCG
AGAGTTGAGACACATTCGATGGGCTACCACCCAGTAGGTTATCATCGTGG
GCAAACTCGACCGCATATTGTAGACCATCCATGTCGACTGATAACT

BS14549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-PA 366 CG14072-RA 1..366 382..17 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 735 CG14072-RC 246..612 383..17 1835 100 Minus
CG14072-RB 778 CG14072-RB 289..655 383..17 1835 100 Minus
CG14072-RA 521 CG14072-RA 32..398 383..17 1835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10937514..10937808 311..17 1475 100 Minus
2L 23513712 2L 10937384..10937456 383..311 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:47:04 has no hits.

BS14549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:36 Download gff for BS14549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-PA 1..366 17..382 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:11 Download gff for BS14549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..398 17..390 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:26 Download gff for BS14549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 28..398 17..390 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:26 Download gff for BS14549.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10937380..10937456 311..390 96 -> Minus
2L 10937515..10937808 17..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:11 Download gff for BS14549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10937380..10937456 311..390 96 -> Minus
arm_2L 10937515..10937808 17..310 100   Minus

BS14549.complete Sequence

398 bp assembled on 2006-11-01

GenBank Submission: FJ637700

> BS14549.complete
GAAGTTATCAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCC
ACGATGATAACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCG
GAATTTCTGGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGA
CGGCCAAAACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATT
TGCTGGCAACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAA
TTAATCTTCAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTG
GCTCCTGGATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTC
TGCAGGATGCGTTTGTTGGCAATGGAGATTGAAAGCTTTCTAGACCAT

BS14549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 366 CG14072-PC 1..366 17..382 1830 100 Plus
CG14072-RB 366 CG14072-PB 1..366 17..382 1830 100 Plus
CG14072-RA 366 CG14072-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-RC 735 CG14072-RC 246..612 16..382 1835 100 Plus
CG14072-RB 778 CG14072-RB 289..655 16..382 1835 100 Plus
CG14072-RA 521 CG14072-RA 32..398 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10937514..10937808 88..382 1475 100 Plus
2L 23513712 2L 10937384..10937456 16..88 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:25:34 has no hits.

BS14549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:26 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:34 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 47..417 9..382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:55 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 33..397 17..381 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:27 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 47..417 9..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:15 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
CG14072-RA 33..397 17..381 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:15 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10937385..10937456 17..88 100 -> Plus
2L 10937515..10937807 89..381 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:55 Download gff for BS14549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10937385..10937456 17..88 100 -> Plus
arm_2L 10937515..10937807 89..381 100   Plus

BS14549.pep Sequence

Translation from 16 to 381

> BS14549.pep
MDGLQYAVEFAHDDNLLGGSPSNVSQLSEFLAMLTLKSAEERNDDGQNRH
DKLLQFKREADLLATKFDSPDYYTQKEELIFKVVCELRGIDHEKWLLDEM
GLMDEDAFGDFLQDAFVGNGD*

BS14549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14072-PC 121 CG14072-PC 1..121 1..121 634 100 Plus
CG14072-PB 121 CG14072-PB 1..121 1..121 634 100 Plus
CG14072-PA 121 CG14072-PA 1..121 1..121 634 100 Plus