Clone Sequence Records
BS14558.3prime Sequence
546 bp (546 high quality bases) assembled on 2006-10-13
> BS14558.3prime
ATGGTCTAGAAAGCTTTCAATGGGACATCAGCTGATTGATGGCGGAAACG
AATTTGCTAAGATTTTCCGGTTTCGTTTCATAGGGCTTTAAGGCTTCAAA
GTCCAGAGTAGCTAGCTGGGCATCCACGTCGGTAACTTTGCAGTAATACA
GATAGTTTTCAGCGGCCAGTTGCTTGGCCAACTCCAGTTGATGATTGTCC
ATGAGCGTGTCATTTATCACAATGAGTCCAGGTTTCTGGTTATTTAGTAT
ATCCATGCAAGTTCCGGCTCCCGCATGTCCAATAATTAGGTCTGCGGACT
TGATGTCCTCCGTATTTGGCCGGAAATTGTACTGCTCTATCTGGATTCCG
TAGTTTTTTCTTATCAATTGTATTTCATCGTCTGTTAATGGTTGCGAATT
TCCGTGCTGTATGACGAGTTTGGTGCATTTCCGGTTCTGTAGAGCTTTGA
GTGCGGGTTCCGTGGATGCAGTTGATATTAGAGCATCGAATTTGGTGGTA
CCAACGGTAATGTAAACAGTGTTCAAATGCATGTCGACTGATAACT
BS14558.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-PA | 516 | CG14512-RA | 1..516 | 532..17 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 604 | CG14512-RA | 48..563 | 532..17 | 2580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29138011..29138526 | 17..532 | 2580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:24:06 has no hits.
BS14558.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:43 Download gff for
BS14558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-PA | 1..516 | 17..532 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:17 Download gff for
BS14558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 12..540 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:08 Download gff for
BS14558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 12..540 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:08 Download gff for
BS14558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29138009..29138532 | 12..540 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:17 Download gff for
BS14558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24963731..24964254 | 12..540 | 98 | | Plus |
BS14558.5prime Sequence
546 bp (546 high quality bases) assembled on 2006-10-13
> BS14558.5prime
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATTGAAAGCTTTCTAGACC
BS14558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-PA | 516 | CG14512-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 604 | CG14512-RA | 48..563 | 17..532 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29138011..29138526 | 532..17 | 2580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:58:22 has no hits.
BS14558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:43 Download gff for
BS14558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:33 Download gff for
BS14558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:33 Download gff for
BS14558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:33 Download gff for
BS14558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29138009..29138532 | 9..537 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:33 Download gff for
BS14558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24963731..24964254 | 9..537 | 98 | | Minus |
BS14558.complete Sequence
548 bp assembled on 2006-11-01
GenBank Submission: FJ637702
> BS14558.complete
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATTGAAAGCTTTCTAGACCAT
BS14558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 516 | CG14512-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 604 | CG14512-RA | 48..563 | 17..532 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29138011..29138526 | 532..17 | 2580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:04:42 has no hits.
BS14558.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:29 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:35 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:44 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 48..562 | 17..531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:29 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:22 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 48..562 | 17..531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:22 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29138012..29138526 | 17..531 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:44 Download gff for
BS14558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24963734..24964248 | 17..531 | 100 | | Minus |
BS14558.pep Sequence
Translation from 16 to 531
> BS14558.pep
MHLNTVYITVGTTKFDALISTASTEPALKALQNRKCTKLVIQHGNSQPLT
DDEIQLIRKNYGIQIEQYNFRPNTEDIKSADLIIGHAGAGTCMDILNNQK
PGLIVINDTLMDNHQLELAKQLAAENYLYYCKVTDVDAQLATLDFEALKP
YETKPENLSKFVSAINQLMSH*
BS14558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-PA | 171 | CG14512-PA | 1..171 | 1..171 | 881 | 100 | Plus |