Clone BS14558 Report

Search the DGRC for BS14558

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG14512-RA
Protein status:BS14558.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14558.3prime Sequence

546 bp (546 high quality bases) assembled on 2006-10-13

> BS14558.3prime
ATGGTCTAGAAAGCTTTCAATGGGACATCAGCTGATTGATGGCGGAAACG
AATTTGCTAAGATTTTCCGGTTTCGTTTCATAGGGCTTTAAGGCTTCAAA
GTCCAGAGTAGCTAGCTGGGCATCCACGTCGGTAACTTTGCAGTAATACA
GATAGTTTTCAGCGGCCAGTTGCTTGGCCAACTCCAGTTGATGATTGTCC
ATGAGCGTGTCATTTATCACAATGAGTCCAGGTTTCTGGTTATTTAGTAT
ATCCATGCAAGTTCCGGCTCCCGCATGTCCAATAATTAGGTCTGCGGACT
TGATGTCCTCCGTATTTGGCCGGAAATTGTACTGCTCTATCTGGATTCCG
TAGTTTTTTCTTATCAATTGTATTTCATCGTCTGTTAATGGTTGCGAATT
TCCGTGCTGTATGACGAGTTTGGTGCATTTCCGGTTCTGTAGAGCTTTGA
GTGCGGGTTCCGTGGATGCAGTTGATATTAGAGCATCGAATTTGGTGGTA
CCAACGGTAATGTAAACAGTGTTCAAATGCATGTCGACTGATAACT

BS14558.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 516 CG14512-RA 1..516 532..17 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 604 CG14512-RA 48..563 532..17 2580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29138011..29138526 17..532 2580 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:24:06 has no hits.

BS14558.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:43 Download gff for BS14558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-PA 1..516 17..532 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:17 Download gff for BS14558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 12..540 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:08 Download gff for BS14558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 12..540 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:08 Download gff for BS14558.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29138009..29138532 12..540 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:17 Download gff for BS14558.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24963731..24964254 12..540 98   Plus

BS14558.5prime Sequence

546 bp (546 high quality bases) assembled on 2006-10-13

> BS14558.5prime
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATTGAAAGCTTTCTAGACC

BS14558.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 516 CG14512-RA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 604 CG14512-RA 48..563 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29138011..29138526 532..17 2580 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:58:22 has no hits.

BS14558.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:43 Download gff for BS14558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-PA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:33 Download gff for BS14558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..537 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:33 Download gff for BS14558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..537 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:33 Download gff for BS14558.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29138009..29138532 9..537 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:33 Download gff for BS14558.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24963731..24964254 9..537 98   Minus

BS14558.complete Sequence

548 bp assembled on 2006-11-01

GenBank Submission: FJ637702

> BS14558.complete
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATTGAAAGCTTTCTAGACCAT

BS14558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 516 CG14512-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 604 CG14512-RA 48..563 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29138011..29138526 532..17 2580 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:04:42 has no hits.

BS14558.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:29 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:35 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..537 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:44 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 48..562 17..531 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:29 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..537 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:22 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 48..562 17..531 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:22 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29138012..29138526 17..531 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:44 Download gff for BS14558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24963734..24964248 17..531 100   Minus

BS14558.pep Sequence

Translation from 16 to 531

> BS14558.pep
MHLNTVYITVGTTKFDALISTASTEPALKALQNRKCTKLVIQHGNSQPLT
DDEIQLIRKNYGIQIEQYNFRPNTEDIKSADLIIGHAGAGTCMDILNNQK
PGLIVINDTLMDNHQLELAKQLAAENYLYYCKVTDVDAQLATLDFEALKP
YETKPENLSKFVSAINQLMSH*

BS14558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 171 CG14512-PA 1..171 1..171 881 100 Plus