Clone Sequence Records
BS14559.3prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS14559.3prime
ATGGTCTAGAAAGCTTTTACAAAAGGCCGCGTTGGCGGAAGATCTCGTCC
AGCTTGAGCTCCAGGTTGGCGTTGGTTCCTCGCAGATTGTCCACCACCTT
TTTGGCCCAAACGAAGTACTGATCACGACGCTCCTGTGTCCACCCTGTCG
GTGTGTTGACTTGCAGATCCCTTAGGTTATCCAATTTGTCAGCCAGCTTT
ATGAGCTTTGCTCTGCAGCTGCTTTTGGCTGCATTTTCTATTTGCAGGCG
TTTTCTCTCCTGTTTCTCCAGGGACTTGTCGTCCGTCACCTCCCTCACTA
GTCCACAAACATCCGGTCCAAAGAGTTTCTCAACATCCTCGAAAGATGCG
TCCGTATCCTCCACGACATCGTGCAGAAGTGCAGCCATTAGGACTCCCTC
ATCTGTGATGCAGGCCTCCACGGAGAGAATAGTGCTCACATTGATCACAT
GGTTCACATAGGGGGTTTCCTGAGGATCCTTGCGACGTTGCTGCCGGTGC
TTAAAAGCTGCATATTGGAGGCACTCCATGAATTTGGCAGATGGATATGT
GGCCATGTCGACTGATAACT
BS14559.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11900-PA | 540 | CG11900-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 642 | CG11900-RA | 67..607 | 556..16 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29201969..29202318 | 133..482 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 29201791..29201911 | 16..136 | 605 | 100 | Plus |
3R | 32079331 | 3R | 29202381..29202459 | 478..556 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:34:37 has no hits.
BS14559.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:44 Download gff for
BS14559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:04 Download gff for
BS14559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..607 | 16..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:01 Download gff for
BS14559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..607 | 16..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:01 Download gff for
BS14559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29201791..29201908 | 16..133 | 100 | <- | Plus |
3R | 29201970..29202314 | 134..478 | 100 | <- | Plus |
3R | 29202382..29202464 | 479..564 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:04 Download gff for
BS14559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25027513..25027630 | 16..133 | 100 | <- | Plus |
arm_3R | 25027692..25028036 | 134..478 | 100 | <- | Plus |
arm_3R | 25028104..25028186 | 479..564 | 95 | | Plus |
BS14559.5prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS14559.5prime
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGTAAAAGCTTTCTAGACC
BS14559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11900-PA | 540 | CG11900-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 642 | CG11900-RA | 67..607 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29201969..29202318 | 440..91 | 1750 | 100 | Minus |
3R | 32079331 | 3R | 29201791..29201911 | 557..437 | 605 | 100 | Minus |
3R | 32079331 | 3R | 29202381..29202459 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:28:23 has no hits.
BS14559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:45 Download gff for
BS14559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:17 Download gff for
BS14559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..607 | 9..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:11 Download gff for
BS14559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..607 | 9..557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:11 Download gff for
BS14559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29201970..29202314 | 95..439 | 100 | <- | Minus |
3R | 29201791..29201908 | 440..557 | 100 | <- | Minus |
3R | 29202382..29202464 | 9..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:17 Download gff for
BS14559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25027513..25027630 | 440..557 | 100 | <- | Minus |
arm_3R | 25027692..25028036 | 95..439 | 100 | <- | Minus |
arm_3R | 25028104..25028186 | 9..94 | 95 | | Minus |
BS14559.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ637703
> BS14559.complete
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGTAAAAGCTTTCTAGACCAT
BS14559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 540 | CG11900-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 642 | CG11900-RA | 67..607 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29201969..29202318 | 440..91 | 1750 | 100 | Minus |
3R | 32079331 | 3R | 29201791..29201911 | 557..437 | 605 | 100 | Minus |
3R | 32079331 | 3R | 29202381..29202459 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:40:33 has no hits.
BS14559.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:30 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:37 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-RA | 62..607 | 9..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:34 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 67..604 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:30 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-RA | 62..607 | 9..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:00 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 67..604 | 17..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:00 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29201794..29201908 | 440..554 | 100 | <- | Minus |
3R | 29201970..29202314 | 95..439 | 100 | <- | Minus |
3R | 29202382..29202459 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:34 Download gff for
BS14559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25027516..25027630 | 440..554 | 100 | <- | Minus |
arm_3R | 25027692..25028036 | 95..439 | 100 | <- | Minus |
arm_3R | 25028104..25028181 | 17..94 | 100 | | Minus |
BS14559.pep Sequence
Translation from 16 to 555
> BS14559.pep
MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI
TDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQE
RKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVW
AKKVVDNLRGTNANLELKLDEIFRQRGLL*
BS14559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-PA | 179 | CG11900-PA | 1..179 | 1..179 | 923 | 100 | Plus |