Clone BS14559 Report

Search the DGRC for BS14559

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptMesh1-RA
Protein status:BS14559.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14559.3prime Sequence

570 bp (570 high quality bases) assembled on 2006-10-13

> BS14559.3prime
ATGGTCTAGAAAGCTTTTACAAAAGGCCGCGTTGGCGGAAGATCTCGTCC
AGCTTGAGCTCCAGGTTGGCGTTGGTTCCTCGCAGATTGTCCACCACCTT
TTTGGCCCAAACGAAGTACTGATCACGACGCTCCTGTGTCCACCCTGTCG
GTGTGTTGACTTGCAGATCCCTTAGGTTATCCAATTTGTCAGCCAGCTTT
ATGAGCTTTGCTCTGCAGCTGCTTTTGGCTGCATTTTCTATTTGCAGGCG
TTTTCTCTCCTGTTTCTCCAGGGACTTGTCGTCCGTCACCTCCCTCACTA
GTCCACAAACATCCGGTCCAAAGAGTTTCTCAACATCCTCGAAAGATGCG
TCCGTATCCTCCACGACATCGTGCAGAAGTGCAGCCATTAGGACTCCCTC
ATCTGTGATGCAGGCCTCCACGGAGAGAATAGTGCTCACATTGATCACAT
GGTTCACATAGGGGGTTTCCTGAGGATCCTTGCGACGTTGCTGCCGGTGC
TTAAAAGCTGCATATTGGAGGCACTCCATGAATTTGGCAGATGGATATGT
GGCCATGTCGACTGATAACT

BS14559.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11900-PA 540 CG11900-RA 1..540 556..17 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 642 CG11900-RA 67..607 556..16 2705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29201969..29202318 133..482 1750 100 Plus
3R 32079331 3R 29201791..29201911 16..136 605 100 Plus
3R 32079331 3R 29202381..29202459 478..556 395 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:34:37 has no hits.

BS14559.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:44 Download gff for BS14559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11900-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:04 Download gff for BS14559.3prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..607 16..564 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:01 Download gff for BS14559.3prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..607 16..564 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:01 Download gff for BS14559.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29201791..29201908 16..133 100 <- Plus
3R 29201970..29202314 134..478 100 <- Plus
3R 29202382..29202464 479..564 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:04 Download gff for BS14559.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25027513..25027630 16..133 100 <- Plus
arm_3R 25027692..25028036 134..478 100 <- Plus
arm_3R 25028104..25028186 479..564 95   Plus

BS14559.5prime Sequence

570 bp (570 high quality bases) assembled on 2006-10-13

> BS14559.5prime
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGTAAAAGCTTTCTAGACC

BS14559.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11900-PA 540 CG11900-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 642 CG11900-RA 67..607 17..557 2705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29201969..29202318 440..91 1750 100 Minus
3R 32079331 3R 29201791..29201911 557..437 605 100 Minus
3R 32079331 3R 29202381..29202459 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:28:23 has no hits.

BS14559.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:45 Download gff for BS14559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11900-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:17 Download gff for BS14559.5prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..607 9..557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:11 Download gff for BS14559.5prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..607 9..557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:11 Download gff for BS14559.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29201970..29202314 95..439 100 <- Minus
3R 29201791..29201908 440..557 100 <- Minus
3R 29202382..29202464 9..94 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:17 Download gff for BS14559.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25027513..25027630 440..557 100 <- Minus
arm_3R 25027692..25028036 95..439 100 <- Minus
arm_3R 25028104..25028186 9..94 95   Minus

BS14559.complete Sequence

572 bp assembled on 2006-11-01

GenBank Submission: FJ637703

> BS14559.complete
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGTAAAAGCTTTCTAGACCAT

BS14559.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 540 CG11900-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 642 CG11900-RA 67..607 17..557 2705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29201969..29202318 440..91 1750 100 Minus
3R 32079331 3R 29201791..29201911 557..437 605 100 Minus
3R 32079331 3R 29202381..29202459 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:40:33 has no hits.

BS14559.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:30 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
CG11900-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:37 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
CG11900-RA 62..607 9..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:34 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 67..604 17..554 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:30 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
CG11900-RA 62..607 9..557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:00 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 67..604 17..554 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:00 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29201794..29201908 440..554 100 <- Minus
3R 29201970..29202314 95..439 100 <- Minus
3R 29202382..29202459 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:34 Download gff for BS14559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25027516..25027630 440..554 100 <- Minus
arm_3R 25027692..25028036 95..439 100 <- Minus
arm_3R 25028104..25028181 17..94 100   Minus

BS14559.pep Sequence

Translation from 16 to 555

> BS14559.pep
MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI
TDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQE
RKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVW
AKKVVDNLRGTNANLELKLDEIFRQRGLL*

BS14559.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-PA 179 CG11900-PA 1..179 1..179 923 100 Plus