Clone BS14561 Report

Search the DGRC for BS14561

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG14835-RA
Protein status:BS14561.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14561.3prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS14561.3prime
ATGGTCTAGAAAGCTTTTAAAGAGGCGGGTTTTCCCAGTGAAATTGGGAT
GTATACCTGGTACACCTGGTACTTCCAATCCCTGGACTTCGCTTCCGGCT
CGTTGCACCCATCTTCTGCTGCCGCTTCTTCCTATGCGTCTTGGCATTTC
CACGACAGATTCTACGCTTACTTGACTGAACATCAGAGCGCGTCCTTTGC
ACTGTGACCTGCTGAGGCGACAGGACATTGACGGTTAACCTCATTGCCGA
CTCGATGGATGGTCCGAATTGGGCCATCAAATAGGGGACTTCCTCGAACA
AGGACTGCTCCTGGTCACTGAGTGCGTGCCAAGCGTTGCGGGCTTCCTTA
ACCAGTGTGACAGCTGGTATATTCTTACAATCGCAGCCTAGGCGGTATTC
CCGCAGAAAGTTGTACGGGGCACATTTGCTGATGAACACTGGCGACTTGG
AGCCAATGCTATAGCTGTAGTCCATGTCGACTGATAACT

BS14561.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-PA 459 CG14835-RA 1..459 475..17 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-RA 659 CG14835-RA 135..595 475..15 2305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7436872..7437332 15..475 2305 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:13:34 has no hits.

BS14561.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:46 Download gff for BS14561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14835-PA 1..459 17..475 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:49 Download gff for BS14561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 128..600 10..483 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:56 Download gff for BS14561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 128..600 10..483 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:56 Download gff for BS14561.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7436867..7437339 10..483 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:49 Download gff for BS14561.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7429967..7430439 10..483 98   Plus

BS14561.5prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS14561.5prime
GAAGTTATCAGTCGACATGGACTACAGCTATAGCATTGGCTCCAAGTCGC
CAGTGTTCATCAGCAAATGTGCCCCGTACAACTTTCTGCGGGAATACCGC
CTAGGCTGCGATTGTAAGAATATACCAGCTGTCACACTGGTTAAGGAAGC
CCGCAACGCTTGGCACGCACTCAGTGACCAGGAGCAGTCCTTGTTCGAGG
AAGTCCCCTATTTGATGGCCCAATTCGGACCATCCATCGAGTCGGCAATG
AGGTTAACCGTCAATGTCCTGTCGCCTCAGCAGGTCACAGTGCAAAGGAC
GCGCTCTGATGTTCAGTCAAGTAAGCGTAGAATCTGTCGTGGAAATGCCA
AGACGCATAGGAAGAAGCGGCAGCAGAAGATGGGTGCAACGAGCCGGAAG
CGAAGTCCAGGGATTGGAAGTACCAGGTGTACCAGGTATACATCCCAATT
TCACTGGGAAAACCCGCCTCTTTAAAAGCTTTCTAGACC

BS14561.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-PA 459 CG14835-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-RA 659 CG14835-RA 135..595 17..477 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7436872..7437332 477..17 2305 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:50:56 has no hits.

BS14561.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:46 Download gff for BS14561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14835-PA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:34 Download gff for BS14561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 128..600 9..482 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:18 Download gff for BS14561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 128..600 9..482 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:18 Download gff for BS14561.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7436867..7437339 9..482 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:34 Download gff for BS14561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7429967..7430439 9..482 98   Minus

BS14561.complete Sequence

491 bp assembled on 2006-11-01

GenBank Submission: FJ637704

> BS14561.complete
GAAGTTATCAGTCGACATGGACTACAGCTATAGCATTGGCTCCAAGTCGC
CAGTGTTCATCAGCAAATGTGCCCCGTACAACTTTCTGCGGGAATACCGC
CTAGGCTGCGATTGTAAGAATATACCAGCTGTCACACTGGTTAAGGAAGC
CCGCAACGCTTGGCACGCACTCAGTGACCAGGAGCAGTCCTTGTTCGAGG
AAGTCCCCTATTTGATGGCCCAATTCGGACCATCCATCGAGTCGGCAATG
AGGTTAACCGTCAATGTCCTGTCGCCTCAGCAGGTCACAGTGCAAAGGAC
GCGCTCTGATGTTCAGTCAAGTAAGCGTAGAATCTGTCGTGGAAATGCCA
AGACGCATAGGAAGAAGCGGCAGCAGAAGATGGGTGCAACGAGCCGGAAG
CGAAGTCCAGGGATTGGAAGTACCAGGTGTACCAGGTATACATCCCAATT
TCACTGGGAAAACCCGCCTCTTTAAAAGCTTTCTAGACCAT

BS14561.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-RA 459 CG14835-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-RA 659 CG14835-RA 135..595 17..477 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7436872..7437332 477..17 2305 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:33:17 has no hits.

BS14561.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:51 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:29 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 128..600 9..482 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:46 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 135..591 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:52 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 128..593 9..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:09 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
CG14835-RA 135..591 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:09 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7436876..7437332 17..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:46 Download gff for BS14561.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7429976..7430432 17..473 100   Minus

BS14561.pep Sequence

Translation from 16 to 474

> BS14561.pep
MDYSYSIGSKSPVFISKCAPYNFLREYRLGCDCKNIPAVTLVKEARNAWH
ALSDQEQSLFEEVPYLMAQFGPSIESAMRLTVNVLSPQQVTVQRTRSDVQ
SSKRRICRGNAKTHRKKRQQKMGATSRKRSPGIGSTRCTRYTSQFHWENP
PL*

BS14561.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14835-PA 152 CG14835-PA 1..152 1..152 803 100 Plus