Clone Sequence Records
BS14564.3prime Sequence
639 bp (639 high quality bases) assembled on 2006-10-13
> BS14564.3prime
ATGGTCTAGAAAGCTTTTAATTTTCATTTCCATTTGAAGGTTCGAATTCA
TGTTCCGAGACGAGGTATGTTGGTGTCCATCGCCATAACCATTCCACCAG
ATAGAAATTGGCAGCCATCGGATTGCCAAGCGCATACTTCCTTGCAAAAT
TATGGCAATTGAAGGTGCCACGACCCTTTTCCTCGCCCTCGGGAACGAAA
GTCTCGTCGAAATCGAGCTCCAGATACTGCTTGAAGGCCAGGAAGACGAT
TCGATGGATGTTACTGCCGTGGATGGTCCGCCGGTTGTCGTAGGCCACAA
GCGTCTGACCCATGGCGACATCGCAGCCCGGAATATTACCGACCATCCAA
ATGAGCCACTCCGTATTATTGTCCGGCGGCACGTCCAAGTCGACCATCAT
CAGCGTGTGATAGTGTTCCGGATCGGCCTTAAACCGAATGATCGGTTGCT
TCAGCGTCTCATTAATCACTACCATAATGCCCGGTTTGATGTCGATATCG
CAGGGATATAGCACACTGATCACCTTCGTTGGCTTGCAGGCAAAGAGGCG
GGGTATCACGTGGTGCCTCTTGAGTTCCGTGACCAGTTTCTCAACTGGAC
AAAGGATCGGGCAGCTCACCAGCATGTCGACTGATAACT
BS14564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-PA | 609 | CG30060-RA | 1..609 | 625..17 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 670 | CG30060-RA | 44..653 | 626..17 | 3050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13422995..13423604 | 17..626 | 3050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:06:54 has no hits.
BS14564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:48 Download gff for
BS14564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-PA | 1..609 | 17..625 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:24 Download gff for
BS14564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 17..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:39 Download gff for
BS14564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 17..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:39 Download gff for
BS14564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422995..13423607 | 17..633 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:24 Download gff for
BS14564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310500..9311112 | 17..633 | 99 | | Plus |
BS14564.5prime Sequence
639 bp (639 high quality bases) assembled on 2006-10-13
> BS14564.5prime
GAAGTTATCAGTCGACATGCTGGTGAGCTGCCCGATCCTTTGTCCAGTTG
AGAAACTGGTCACGGAACTCAAGAGGCACCACGTGATACCCCGCCTCTTT
GCCTGCAAGCCAACGAAGGTGATCAGTGTGCTATATCCCTGCGATATCGA
CATCAAACCGGGCATTATGGTAGTGATTAATGAGACGCTGAAGCAACCGA
TCATTCGGTTTAAGGCCGATCCGGAACACTATCACACGCTGATGATGGTC
GACTTGGACGTGCCGCCGGACAATAATACGGAGTGGCTCATTTGGATGGT
CGGTAATATTCCGGGCTGCGATGTCGCCATGGGTCAGACGCTTGTGGCCT
ACGACAACCGGCGGACCATCCACGGCAGTAACATCCATCGAATCGTCTTC
CTGGCCTTCAAGCAGTATCTGGAGCTCGATTTCGACGAGACTTTCGTTCC
CGAGGGCGAGGAAAAGGGTCGTGGCACCTTCAATTGCCATAATTTTGCAA
GGAAGTATGCGCTTGGCAATCCGATGGCTGCCAATTTCTATCTGGTGGAA
TGGTTATGGCGATGGACACCAACATACCTCGTCTCGGAACATGAATTCGA
ACCTTCAAATGGAAATGAAAATTAAAAGCTTTCTAGACC
BS14564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-PA | 609 | CG30060-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 670 | CG30060-RA | 44..653 | 16..625 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13422995..13423604 | 625..16 | 3050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:34:58 has no hits.
BS14564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:48 Download gff for
BS14564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-PA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:08 Download gff for
BS14564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 9..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:54 Download gff for
BS14564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 38..653 | 9..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:54 Download gff for
BS14564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422995..13423607 | 9..625 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:08 Download gff for
BS14564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310500..9311112 | 9..625 | 99 | | Minus |
BS14564.complete Sequence
641 bp assembled on 2006-11-01
GenBank Submission: FJ637705
> BS14564.complete
GAAGTTATCAGTCGACATGCTGGTGAGCTGCCCGATCCTTTGTCCAGTTG
AGAAACTGGTCACGGAACTCAAGAGGCACCACGTGATACCCCGCCTCTTT
GCCTGCAAGCCAACGAAGGTGATCAGTGTGCTATATCCCTGCGATATCGA
CATCAAACCGGGCATTATGGTAGTGATTAATGAGACGCTGAAGCAACCGA
TCATTCGGTTTAAGGCCGATCCGGAACACTATCACACGCTGATGATGGTC
GACTTGGACGTGCCGCCGGACAATAATACGGAGTGGCTCATTTGGATGGT
CGGTAATATTCCGGGCTGCGATGTCGCCATGGGTCAGACGCTTGTGGCCT
ACGACAACCGGCGGACCATCCACGGCAGTAACATCCATCGAATCGTCTTC
CTGGCCTTCAAGCAGTATCTGGAGCTCGATTTCGACGAGACTTTCGTTCC
CGAGGGCGAGGAAAAGGGTCGTGGCACCTTCAATTGCCATAATTTTGCAA
GGAAGTATGCGCTTGGCAATCCGATGGCTGCCAATTTCTATCTGGTGGAA
TGGTTATGGCGATGGACACCAACATACCTCGTCTCGGAACATGAATTCGA
ACCTTCAAATGGAAATGAAAATTAAAAGCTTTCTAGACCAT
BS14564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 609 | CG30060-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-RA | 670 | CG30060-RA | 44..653 | 16..625 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13422995..13423604 | 625..16 | 3050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:48:33 has no hits.
BS14564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:20 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:25 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:03 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 45..645 | 17..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:20 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:09 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30060-RA | 45..645 | 17..617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:09 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13423003..13423603 | 17..617 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:03 Download gff for
BS14564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310508..9311108 | 17..617 | 100 | | Minus |
BS14564.pep Sequence
Translation from 16 to 624
> BS14564.pep
MLVSCPILCPVEKLVTELKRHHVIPRLFACKPTKVISVLYPCDIDIKPGI
MVVINETLKQPIIRFKADPEHYHTLMMVDLDVPPDNNTEWLIWMVGNIPG
CDVAMGQTLVAYDNRRTIHGSNIHRIVFLAFKQYLELDFDETFVPEGEEK
GRGTFNCHNFARKYALGNPMAANFYLVEWLWRWTPTYLVSEHEFEPSNGN
EN*
BS14564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30060-PA | 202 | CG30060-PA | 1..202 | 1..202 | 1112 | 100 | Plus |
| CG6180-PA | 257 | CG6180-PA | 74..244 | 12..179 | 325 | 39.8 | Plus |
| CG17919-PA | 202 | CG17919-PA | 8..188 | 2..179 | 256 | 30.4 | Plus |
| CG17917-PA | 211 | CG17917-PA | 31..190 | 23..179 | 252 | 35 | Plus |
| CG10298-PA | 187 | CG10298-PA | 10..172 | 20..179 | 245 | 31.9 | Plus |
