Clone Sequence Records
BS14568.3prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14568.3prime
ATGGTCTAGAAAGCTTCTACTTGGCAAACGGCTTCTTGGTGACCACATTG
GCTGCTTTCTTCTCCGCTTCACGCCTAGCAGCGGTTTCTTCGCGCTGCTT
CCGGATCAGAGCCAGCCTGGCCAAGTCGGCCCTAGCCTCGGTGGTTTTCC
CAGCTACATGGAGTTTCTCGTAACGCTTGCGAGCACTCTGATCTTGATCG
CGGCGGGATAGCCCCGCCTTGGTCTGATCAAGCATAATGGCTGAAATCTT
TTGTGGCCCCTTCTTGGACACCCGGTTGGGATTATCGATTTCAATGAGTG
AAGCCACGCCCTTTCTGGCAACACGAGATTCCGTTTCGCAATCCTCGGAA
GAACTGTCCACCTCATCTGACGACGATTTCTGATTGCGAGTCGCTTTTTT
CAAGGTGCGATCCTTTGCTATGGAGGAGGATGAATTGGCTCCTCCCCTGG
TTGCTACTTTCTCATCGCTATCTGAACCAGAGCCGCTGACTTGGTCGTAA
TCGTCCTCTGACTCCTGCCGCAGTTCCTCGGGGGATGTGAACTGGCGAGT
GCGACCCTTGTAGCTAAGGAACTTTCCTCGTGGCATGTCGACTGATAACT
BS14568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-PA | 570 | CG4438-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
CG11444-PA | 648 | CG11444-RA | 488..575 | 177..90 | 190 | 88.6 | Minus |
CG11444-PA | 648 | CG11444-RA | 316..370 | 313..259 | 175 | 92.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 922 | CG4438-RB | 174..745 | 587..16 | 2860 | 100 | Minus |
CG4438-RA | 819 | CG4438-RA | 182..753 | 587..16 | 2860 | 100 | Minus |
CG11444-RB | 1282 | CG11444-RB | 891..1065 | 190..16 | 440 | 83.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9397176..9397747 | 16..587 | 2860 | 100 | Plus |
X | 23542271 | X | 4553334..4553508 | 16..190 | 440 | 83.4 | Plus |
X | 23542271 | X | 4553853..4553983 | 457..587 | 325 | 83.2 | Plus |
X | 23542271 | X | 4553591..4553692 | 237..338 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:29:13 has no hits.
BS14568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:51 Download gff for
BS14568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:21 Download gff for
BS14568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..753 | 16..596 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:19 Download gff for
BS14568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..753 | 16..596 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:19 Download gff for
BS14568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9397176..9397752 | 16..596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:21 Download gff for
BS14568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9397176..9397752 | 16..596 | 99 | | Plus |
BS14568.5prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14568.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGTAGAAGCTTTCTAGACC
BS14568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-PA | 570 | CG4438-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
CG11444-PA | 648 | CG11444-RA | 488..575 | 426..513 | 190 | 88.6 | Plus |
CG11444-PA | 648 | CG11444-RA | 316..370 | 290..344 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 922 | CG4438-RB | 174..745 | 16..587 | 2860 | 100 | Plus |
CG4438-RA | 819 | CG4438-RA | 182..753 | 16..587 | 2860 | 100 | Plus |
CG11444-RB | 1282 | CG11444-RB | 891..1065 | 413..587 | 440 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9397176..9397747 | 587..16 | 2860 | 100 | Minus |
X | 23542271 | X | 4553334..4553508 | 587..413 | 440 | 83.4 | Minus |
X | 23542271 | X | 4553853..4553983 | 146..16 | 325 | 83.2 | Minus |
X | 23542271 | X | 4553591..4553692 | 366..265 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:52:44 has no hits.
BS14568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:51 Download gff for
BS14568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:24 Download gff for
BS14568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..753 | 7..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:00 Download gff for
BS14568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..753 | 7..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:00 Download gff for
BS14568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9397176..9397752 | 7..587 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:24 Download gff for
BS14568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9397176..9397752 | 7..587 | 99 | | Minus |
BS14568.complete Sequence
602 bp assembled on 2006-11-01
GenBank Submission: FJ637707
> BS14568.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGTAGAAGCTTTCTAGACC
AT
BS14568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 570 | CG4438-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
CG4438-RA | 570 | CG4438-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
CG11444-RB | 648 | CG11444-PB | 475..648 | 413..586 | 435 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-RB | 922 | CG4438-RB | 174..745 | 16..587 | 2860 | 100 | Plus |
CG4438-RA | 819 | CG4438-RA | 182..753 | 16..587 | 2860 | 100 | Plus |
CG11444-RB | 1282 | CG11444-RB | 891..1065 | 413..587 | 440 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9397176..9397747 | 587..16 | 2860 | 100 | Minus |
X | 23542271 | X | 4553334..4553508 | 587..413 | 440 | 83.4 | Minus |
X | 23542271 | X | 4553853..4553983 | 146..16 | 325 | 83.2 | Minus |
X | 23542271 | X | 4553591..4553692 | 366..265 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:03:15 has no hits.
BS14568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:59 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:59 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 177..753 | 7..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:17 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 183..752 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:59 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 13..588 | 7..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:16 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4438-RA | 183..752 | 17..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:16 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9397177..9397746 | 17..586 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:17 Download gff for
BS14568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9397177..9397746 | 17..586 | 100 | | Minus |
BS14568.pep Sequence
Translation from 16 to 585
> BS14568.pep
MPRGKFLSYKGRTRQFTSPEELRQESEDDYDQVSGSGSDSDEKVATRGGA
NSSSSIAKDRTLKKATRNQKSSSDEVDSSSEDCETESRVARKGVASLIEI
DNPNRVSKKGPQKISAIMLDQTKAGLSRRDQDQSARKRYEKLHVAGKTTE
ARADLARLALIRKQREETAARREAEKKAANVVTKKPFAK*
BS14568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4438-PB | 189 | CG4438-PB | 1..189 | 1..189 | 932 | 100 | Plus |
CG4438-PA | 189 | CG4438-PA | 1..189 | 1..189 | 932 | 100 | Plus |
CG11444-PB | 215 | CG11444-PB | 1..215 | 1..189 | 573 | 62.3 | Plus |
CG11444-PA | 215 | CG11444-PA | 1..215 | 1..189 | 573 | 62.3 | Plus |