Clone BS14568 Report

Search the DGRC for BS14568

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG4438-RA
Protein status:BS14568.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14568.3prime Sequence

600 bp (600 high quality bases) assembled on 2006-10-13

> BS14568.3prime
ATGGTCTAGAAAGCTTCTACTTGGCAAACGGCTTCTTGGTGACCACATTG
GCTGCTTTCTTCTCCGCTTCACGCCTAGCAGCGGTTTCTTCGCGCTGCTT
CCGGATCAGAGCCAGCCTGGCCAAGTCGGCCCTAGCCTCGGTGGTTTTCC
CAGCTACATGGAGTTTCTCGTAACGCTTGCGAGCACTCTGATCTTGATCG
CGGCGGGATAGCCCCGCCTTGGTCTGATCAAGCATAATGGCTGAAATCTT
TTGTGGCCCCTTCTTGGACACCCGGTTGGGATTATCGATTTCAATGAGTG
AAGCCACGCCCTTTCTGGCAACACGAGATTCCGTTTCGCAATCCTCGGAA
GAACTGTCCACCTCATCTGACGACGATTTCTGATTGCGAGTCGCTTTTTT
CAAGGTGCGATCCTTTGCTATGGAGGAGGATGAATTGGCTCCTCCCCTGG
TTGCTACTTTCTCATCGCTATCTGAACCAGAGCCGCTGACTTGGTCGTAA
TCGTCCTCTGACTCCTGCCGCAGTTCCTCGGGGGATGTGAACTGGCGAGT
GCGACCCTTGTAGCTAAGGAACTTTCCTCGTGGCATGTCGACTGATAACT

BS14568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-PA 570 CG4438-RA 1..570 586..17 2850 100 Minus
CG11444-PA 648 CG11444-RA 488..575 177..90 190 88.6 Minus
CG11444-PA 648 CG11444-RA 316..370 313..259 175 92.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 922 CG4438-RB 174..745 587..16 2860 100 Minus
CG4438-RA 819 CG4438-RA 182..753 587..16 2860 100 Minus
CG11444-RB 1282 CG11444-RB 891..1065 190..16 440 83.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9397176..9397747 16..587 2860 100 Plus
X 23542271 X 4553334..4553508 16..190 440 83.4 Plus
X 23542271 X 4553853..4553983 457..587 325 83.2 Plus
X 23542271 X 4553591..4553692 237..338 255 83.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:29:13 has no hits.

BS14568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:51 Download gff for BS14568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:21 Download gff for BS14568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..753 16..596 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:19 Download gff for BS14568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..753 16..596 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:19 Download gff for BS14568.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9397176..9397752 16..596 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:21 Download gff for BS14568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9397176..9397752 16..596 99   Plus

BS14568.5prime Sequence

600 bp (600 high quality bases) assembled on 2006-10-13

> BS14568.5prime
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGTAGAAGCTTTCTAGACC

BS14568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-PA 570 CG4438-RA 1..570 17..586 2850 100 Plus
CG11444-PA 648 CG11444-RA 488..575 426..513 190 88.6 Plus
CG11444-PA 648 CG11444-RA 316..370 290..344 175 92.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 922 CG4438-RB 174..745 16..587 2860 100 Plus
CG4438-RA 819 CG4438-RA 182..753 16..587 2860 100 Plus
CG11444-RB 1282 CG11444-RB 891..1065 413..587 440 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9397176..9397747 587..16 2860 100 Minus
X 23542271 X 4553334..4553508 587..413 440 83.4 Minus
X 23542271 X 4553853..4553983 146..16 325 83.2 Minus
X 23542271 X 4553591..4553692 366..265 255 83.3 Minus
Blast to na_te.dros performed on 2015-01-30 17:52:44 has no hits.

BS14568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:51 Download gff for BS14568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:24 Download gff for BS14568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..753 7..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:00 Download gff for BS14568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..753 7..587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:00 Download gff for BS14568.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9397176..9397752 7..587 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:24 Download gff for BS14568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9397176..9397752 7..587 99   Minus

BS14568.complete Sequence

602 bp assembled on 2006-11-01

GenBank Submission: FJ637707

> BS14568.complete
GAAGTTATCAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTC
GCACTCGCCAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGAC
GATTACGACCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGC
AACCAGGGGAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCT
TGAAAAAAGCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGT
TCTTCCGAGGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGC
TTCACTCATTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCAC
AAAAGATTTCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGC
CGCGATCAAGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGC
TGGGAAAACCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCC
GGAAGCAGCGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCA
GCCAATGTGGTCACCAAGAAGCCGTTTGCCAAGTAGAAGCTTTCTAGACC
AT

BS14568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 570 CG4438-PB 1..570 17..586 2850 100 Plus
CG4438-RA 570 CG4438-PA 1..570 17..586 2850 100 Plus
CG11444-RB 648 CG11444-PB 475..648 413..586 435 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-RB 922 CG4438-RB 174..745 16..587 2860 100 Plus
CG4438-RA 819 CG4438-RA 182..753 16..587 2860 100 Plus
CG11444-RB 1282 CG11444-RB 891..1065 413..587 440 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9397176..9397747 587..16 2860 100 Minus
X 23542271 X 4553334..4553508 587..413 440 83.4 Minus
X 23542271 X 4553853..4553983 146..16 325 83.2 Minus
X 23542271 X 4553591..4553692 366..265 255 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 16:03:15 has no hits.

BS14568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:59 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:59 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 177..753 7..587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:17 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 183..752 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:59 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 13..588 7..586 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:16 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
CG4438-RA 183..752 17..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:16 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9397177..9397746 17..586 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:17 Download gff for BS14568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9397177..9397746 17..586 100   Minus

BS14568.pep Sequence

Translation from 16 to 585

> BS14568.pep
MPRGKFLSYKGRTRQFTSPEELRQESEDDYDQVSGSGSDSDEKVATRGGA
NSSSSIAKDRTLKKATRNQKSSSDEVDSSSEDCETESRVARKGVASLIEI
DNPNRVSKKGPQKISAIMLDQTKAGLSRRDQDQSARKRYEKLHVAGKTTE
ARADLARLALIRKQREETAARREAEKKAANVVTKKPFAK*

BS14568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4438-PB 189 CG4438-PB 1..189 1..189 932 100 Plus
CG4438-PA 189 CG4438-PA 1..189 1..189 932 100 Plus
CG11444-PB 215 CG11444-PB 1..215 1..189 573 62.3 Plus
CG11444-PA 215 CG11444-PA 1..215 1..189 573 62.3 Plus