Clone Sequence Records
BS14571.3prime Sequence
639 bp (639 high quality bases) assembled on 2006-10-13
> BS14571.3prime
ATGGTCTAGAAAGCTTCTAGGCTATGTGGTGAAGAATGCCCTGCCTCACG
AGAGACTCCACCTGAGCTCGGGGCAGATAGTGCTGGCTGTTCTTCTTCAG
GTGGATCACCTCGCCGTCGTCCAGCTCGAACTTCCCATAGTCCTCCATGC
AGCGCACCTCGATGTAAAGTGACTTGGGCGGACGCAGATTGTTGGTTAGA
TCAATGGGCAAGCCCTGGTTGTAGCCCGCACTGCACATGTAGGCAGCCAG
GGACTTGGAGTAGTTGTTGAAGAAGGTGACCTCCGGTTCGCAGAGTGCCT
GCTTGATGTCCCCGGGGATAATGGGTCCAAACTCCCACCTGAGGGCCTTG
ATCCTCCTGCACCGCTCGTATAGGTAGGCCAGCAGGCACCGCTTGTTCCT
CTGGAGAGCTGCGTGCCTGAAGTTGAGCAGGGGCCACAGACTGCGATCCC
CGGAAGCATTGTAGCTGGAGGCCTGGGCCACGTTCTCCTCGAATATCGCC
TTGATCTCCTCCAGCACCTGGCGCACCCCATCGTCGTCGAAGGCGGGAAT
TGTCTGAGACGATCTCTCCAGTTCTTTAAGCAGGTCGAAGGCTTTCTCGC
CGAACATTTTTGTTTGTCGGCTCATGTCGACTGATAACT
BS14571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9187-PA | 609 | CG9187-RA | 1..609 | 625..17 | 2970 | 99.5 | Minus |
| CG32318-PA | 495 | CG32318-RA | 318..495 | 194..17 | 890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..612 | 625..17 | 3000 | 99.5 | Minus |
| CG32318-RA | 785 | CG32318-RA | 608..785 | 194..17 | 890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247066..1247674 | 17..625 | 3000 | 99.5 | Plus |
| 3L | 28110227 | 3L | 1246073..1246250 | 17..194 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:46:22 has no hits.
BS14571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:53 Download gff for
BS14571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9187-PA | 1..609 | 17..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:39 Download gff for
BS14571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..612 | 17..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:06 Download gff for
BS14571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..612 | 17..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:06 Download gff for
BS14571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247066..1247681 | 17..635 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:39 Download gff for
BS14571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247066..1247681 | 17..635 | 98 | | Plus |
BS14571.5prime Sequence
639 bp (639 high quality bases) assembled on 2006-10-13
> BS14571.5prime
GAAGTTATCAGTCGACATGAGCCGACAAACAAAAATGTTCGGCGAGAAAG
CCTTCGACCTGCTTAAAGAACTGGAGAGATCGTCTCAGACAATTCCCGCC
TTCGACGACGATGGGGTGCGCCAGGTGCTGGAGGAGATCAAGGCGATATT
CGAGGAGAACGTGGCCCAGGCCTCCAGCTACAATGCTTCCGGGGATCGCA
GTCTGTGGCCCCTGCTCAACTTCAGGCACGCAGCTCTCCAGAGGAACAAG
CGGTGCCTGCTGGCCTACCTATACGAGCGGTGCAGGAGGATCAAGGCCCT
CAGGTGGGAGTTTGGACCCATTATCCCCGGGGACATCAAGCAGGCACTCT
GCGAACCGGAGGTCACCTTCTTCAACAACTACTCCAAGTCCCTGGCTGCC
TACATGTGCAGTGCGGGCTACAACCAGGGCTTGCCCATTGATCTAACCAA
CAATCTGCGTCCGCCCAAGTCACTTTACATCGAGGTGCGCTGCATGGAGG
ACTATGGGAAGTTCGAGCTGGACGACGGCGAGGTGATCCACCTGAAGAAG
AACAGCCAGCACTATCTGCCCCGAGCTCAGGTGGAGTCTCTCGTGAGGCA
GGGCATTCTTCACCACATAGCCTAGAAGCTTTCTAGACC
BS14571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9187-PA | 609 | CG9187-RA | 1..609 | 17..625 | 2970 | 99.5 | Plus |
| CG32318-PA | 495 | CG32318-RA | 318..495 | 448..625 | 890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..612 | 17..625 | 3000 | 99.5 | Plus |
| CG32318-RA | 785 | CG32318-RA | 608..785 | 448..625 | 890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247066..1247674 | 625..17 | 3000 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1246073..1246250 | 625..448 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:46:52 has no hits.
BS14571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:54 Download gff for
BS14571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9187-PA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:41 Download gff for
BS14571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..612 | 15..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:14 Download gff for
BS14571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..612 | 15..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:14 Download gff for
BS14571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247066..1247681 | 7..625 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:41 Download gff for
BS14571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247066..1247681 | 7..625 | 98 | | Minus |
BS14571.complete Sequence
641 bp assembled on 2006-11-01
GenBank Submission: FJ637708
> BS14571.complete
GAAGTTATCAGTCGACATGAGCCGACAAACAAAAATGTTCGGCGAGAAAG
CCTTCGACCTGCTTAAAGAACTGGAGAGATCGTCTCAGACAATTCCCGCC
TTCGACGACGATGGGGTGCGCCAGGTGCTGGAGGAGATCAAGGCGATATT
CGAGGAGAACGTGGCCCAGGCCTCCAGCTACAATGCTTCCGGGGATCGCA
GTCTGTGGCCCCTGCTCAACTTCAGGCACGCAGCTCTCCAGAGGAACAAG
CGGTGCCTGCTGGCCTACCTATACGAGCGGTGCAGGAGGATCAAGGCCCT
CAGGTGGGAGTTTGGACCCATTATCCCCGGGGACATCAAGCAGGCACTCT
GCGAACCGGAGGTCACCTTCTTCAACAACTACTCCAAGTCCCTGGCTGCC
TACATGTGCAGTGCGGGCTACAACCAGGGCTTGCCCATTGATCTAACCAA
CAATCTGCGTCCGCCCAAGTCACTTTACATCGAGGTGCGCTGCATGGAGG
ACTATGGGAAGTTCGAGCTGGACGACGGCGAGGTGATCCACCTGAAGAAG
AACAGCCAGCACTATCTGCCCCGAGCTCAGGTGGAGTCTCTCGTGAGGCA
GGGCATTCTTCACCACATAGCCTAGAAGCTTTCTAGACCAT
BS14571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 609 | CG9187-PA | 1..609 | 17..625 | 3000 | 99.5 | Plus |
| CG32318-RA | 495 | CG32318-PA | 318..495 | 448..625 | 890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..612 | 17..625 | 3000 | 99.5 | Plus |
| CG32318-RA | 785 | CG32318-RA | 608..785 | 448..625 | 890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247066..1247674 | 625..17 | 3000 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1246073..1246250 | 625..448 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:34:33 has no hits.
BS14571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:05 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:07 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:34 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 4..612 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:06 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:25 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 4..612 | 17..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:25 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247066..1247674 | 17..625 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:34 Download gff for
BS14571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247066..1247674 | 17..625 | 99 | | Minus |
BS14571.pep Sequence
Translation from 16 to 624
> BS14571.pep
MSRQTKMFGEKAFDLLKELERSSQTIPAFDDDGVRQVLEEIKAIFEENVA
QASSYNASGDRSLWPLLNFRHAALQRNKRCLLAYLYERCRRIKALRWEFG
PIIPGDIKQALCEPEVTFFNNYSKSLAAYMCSAGYNQGLPIDLTNNLRPP
KSLYIEVRCMEDYGKFELDDGEVIHLKKNSQHYLPRAQVESLVRQGILHH
IA*
BS14571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-PA | 202 | CG9187-PA | 1..202 | 1..202 | 1060 | 100 | Plus |
| CG32318-PA | 164 | CG32318-PA | 107..164 | 145..202 | 308 | 100 | Plus |
