Clone Sequence Records
BS14572.3prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS14572.3prime
ATGGTCTAGAAAGCTTTTATCTGCACTCTATGCAACACGCTGAGCAGCAG
CAGTGGTAACATTCCATGTCTGGATACAGATCCTGTTCCTCAACCTGTTC
CTGATCCTGTTCCTGCTCCTGGTCGTACATCCTCTTCCGCCTGGCTGACC
GATACAGTCGCCGGATGAGAGCTCCATATGGTTTCCGCGCCATCAGGTGA
GTGGTTGTCTTGTGTATTTCGTAGACGCAATTCGTTTCGAGACACACAAA
AGGCTCCTCCACCTGCAGGATAGTTTCCGATCTGAGATTGGGTACTGGCA
TTGGTAGCAGACTCCTCTGTTTCAAGATATTGATCTTGCTCTTCTTGACC
ACCCTCCTTTTCTTGGCAGGATTGGGTGCTGTAATGGCACCTTGGATCTC
CGCCTCGAAGGATTCCTGGCGCCTGGAGGCCTTGCTCTTCAAGGCCGAAA
CCGTTTTGTATCGGTTCTGGATATCGGTAATGTTTCTCAAGGTCTGCTTA
AAAGCAACCTCGACTTGCTCGACTTCCTGCAGCGTATTCCACAGATTCTT
TTCCATGTCGACTGATAACT
BS14572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-PA | 540 | CG5139-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 802 | CG5139-RA | 129..669 | 556..16 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1198598..1199138 | 16..556 | 2705 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 3425..3504 | 206..280 | 107 | 66.2 | Plus |
BS14572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:54 Download gff for
BS14572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:45 Download gff for
BS14572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 67..610 | 10..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:24 Download gff for
BS14572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 129..672 | 10..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:24 Download gff for
BS14572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1198595..1199138 | 10..556 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:45 Download gff for
BS14572.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1198595..1199138 | 10..556 | 99 | | Plus |
BS14572.5prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS14572.5prime
GAAGTTATCAGTCGACATGGAAAAGAATCTGTGGAATACGCTGCAGGAAG
TCGAGCAAGTCGAGGTTGCTTTTAAGCAGACCTTGAGAAACATTACCGAT
ATCCAGAACCGATACAAAACGGTTTCGGCCTTGAAGAGCAAGGCCTCCAG
GCGCCAGGAATCCTTCGAGGCGGAGATCCAAGGTGCCATTACAGCACCCA
ATCCTGCCAAGAAAAGGAGGGTGGTCAAGAAGAGCAAGATCAATATCTTG
AAACAGAGGAGTCTGCTACCAATGCCAGTACCCAATCTCAGATCGGAAAC
TATCCTGCAGGTGGAGGAGCCTTTTGTGTGTCTCGAAACGAATTGCGTCT
ACGAAATACACAAGACAACCACTCACCTGATGGCGCGGAAACCATATGGA
GCTCTCATCCGGCGACTGTATCGGTCAGCCAGGCGGAAGAGGATGTACGA
CCAGGAGCAGGAACAGGATCAGGAACAGGTTGAGGAACAGGATCTGTATC
CAGACATGGAATGTTACCACTGCTGCTGCTCAGCGTGTTGCATAGAGTGC
AGATAAAAGCTTTCTAGACC
BS14572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-PA | 540 | CG5139-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 802 | CG5139-RA | 129..669 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1198598..1199138 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 3425..3504 | 367..293 | 107 | 66.2 | Minus |
BS14572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:54 Download gff for
BS14572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:04 Download gff for
BS14572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 67..610 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:14 Download gff for
BS14572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 129..672 | 17..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:14 Download gff for
BS14572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1198595..1199138 | 17..563 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:04 Download gff for
BS14572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1198595..1199138 | 17..563 | 99 | | Minus |
BS14572.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ637709
> BS14572.complete
GAAGTTATCAGTCGACATGGAAAAGAATCTGTGGAATACGCTGCAGGAAG
TCGAGCAAGTCGAGGTTGCTTTTAAGCAGACCTTGAGAAACATTACCGAT
ATCCAGAACCGATACAAAACGGTTTCGGCCTTGAAGAGCAAGGCCTCCAG
GCGCCAGGAATCCTTCGAGGCGGAGATCCAAGGTGCCATTACAGCACCCA
ATCCTGCCAAGAAAAGGAGGGTGGTCAAGAAGAGCAAGATCAATATCTTG
AAACAGAGGAGTCTGCTACCAATGCCAGTACCCAATCTCAGATCGGAAAC
TATCCTGCAGGTGGAGGAGCCTTTTGTGTGTCTCGAAACGAATTGCGTCT
ACGAAATACACAAGACAACCACTCACCTGATGGCGCGGAAACCATATGGA
GCTCTCATCCGGCGACTGTATCGGTCAGCCAGGCGGAAGAGGATGTACGA
CCAGGAGCAGGAACAGGATCAGGAACAGGTTGAGGAACAGGATCTGTATC
CAGACATGGAATGTTACCACTGCTGCTGCTCAGCGTGTTGCATAGAGTGC
AGATAAAAGCTTTCTAGACCAT
BS14572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 540 | CG5139-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 802 | CG5139-RA | 129..669 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1198598..1199138 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 3425..3504 | 367..293 | 107 | 66.2 | Minus |
BS14572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:49 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:50 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 52..591 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:25 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 67..604 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:50 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 52..591 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:57 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 129..666 | 17..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:57 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1198601..1199138 | 17..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:25 Download gff for
BS14572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1198601..1199138 | 17..554 | 100 | | Minus |
BS14572.pep Sequence
Translation from 16 to 555
> BS14572.pep
MEKNLWNTLQEVEQVEVAFKQTLRNITDIQNRYKTVSALKSKASRRQESF
EAEIQGAITAPNPAKKRRVVKKSKINILKQRSLLPMPVPNLRSETILQVE
EPFVCLETNCVYEIHKTTTHLMARKPYGALIRRLYRSARRKRMYDQEQEQ
DQEQVEEQDLYPDMECYHCCCSACCIECR*
BS14572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-PA | 179 | CG5139-PA | 1..179 | 1..179 | 939 | 100 | Plus |
