Clone BS14573 Report

Search the DGRC for BS14573

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG9406-RA
Protein status:BS14573.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14573.3prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-13

> BS14573.3prime
ATGGTCTAGAAAGCTTCTAAAACAGTGGTTGTTGTGGTTTCTTGCCCTTT
TCTTTTTCGGCTTGTGCTAGTTCCTCCTTGATAACCTCGGCAATTTCATA
GATATCAGGCTTGTGCCTGAGTTGATTTATGTAGAAGGTGTAGGGAATGT
GTCCAGTAATGGGATCAATTGCCACAGGCCACATAGCATCCAATTCTTCA
GCGGAGAAAGGTTCTCCTTCCTCCGCCATTAATTTGCCGAAGTACTCCTT
GGTCAGATATTTTTTATTTTCTGGATCCAGGGTCTCAAAGGCCTCGAGAA
GCTTTTCCGACGAGGCTGGTTCCATTTGTCGATCCATCAGCAGTTTGGAA
ACGTGTTCCATGAACTTCACCAAATGGGCTTCGCCTGGATAGTCGACGGA
ATCGGTGGCTTTAATGACATCTTCGACCTCTTTTTCGGTGGGCGCGCAAC
CTAAAAATCGGAGCACGTTGCCGACATTGCGGGAATCAATATACTTATCG
CCATGAGTATCAAATATGCAAAATGCTTCCGAAATCTTTTCCTCGAGTTC
GTTGTTTAGGGTAACACCAACTTCCATGTCGACTGATAACT

BS14573.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-PA 561 CG9406-RA 1..561 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 732 CG9406-RA 108..669 577..16 2810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21142545..21142783 565..327 1195 100 Minus
2R 25286936 2R 21142836..21143046 326..116 1055 100 Minus
2R 25286936 2R 21143098..21143198 116..16 505 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:01:02 has no hits.

BS14573.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:55 Download gff for BS14573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:57 Download gff for BS14573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..676 8..581 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:51 Download gff for BS14573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..676 8..581 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:51 Download gff for BS14573.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21142546..21142783 327..564 100 -> Minus
2R 21142836..21143046 116..326 100 -> Minus
2R 21143099..21143205 8..115 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:57 Download gff for BS14573.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17030051..17030288 327..564 100 -> Minus
arm_2R 17030341..17030551 116..326 100 -> Minus
arm_2R 17030604..17030710 8..115 96   Minus

BS14573.5prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-13

> BS14573.5prime
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTTAGAAGCTTTCTAGACC

BS14573.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-PA 561 CG9406-RA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 732 CG9406-RA 108..669 17..578 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21142545..21142783 29..267 1195 100 Plus
2R 25286936 2R 21142836..21143046 268..478 1055 100 Plus
2R 25286936 2R 21143098..21143198 478..578 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:10:28 has no hits.

BS14573.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:55 Download gff for BS14573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:15 Download gff for BS14573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..676 13..586 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:43 Download gff for BS14573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..676 13..586 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:43 Download gff for BS14573.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21143099..21143205 479..586 96   Plus
2R 21142546..21142783 30..267 100 -> Plus
2R 21142836..21143046 268..478 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:15 Download gff for BS14573.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17030341..17030551 268..478 100 -> Plus
arm_2R 17030604..17030710 479..586 96   Plus
arm_2R 17030051..17030288 30..267 100 -> Plus

BS14573.complete Sequence

593 bp assembled on 2006-11-01

GenBank Submission: FJ637710

> BS14573.complete
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTTAGAAGCTTTCTAGACCAT

BS14573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 561 CG9406-PA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 732 CG9406-RA 108..669 17..578 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21142545..21142783 29..267 1195 100 Plus
2R 25286936 2R 21142836..21143046 268..478 1055 100 Plus
2R 25286936 2R 21143098..21143198 478..578 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:05:01 has no hits.

BS14573.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:03 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:04 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 29..593 13..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:06 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 108..668 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:03 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 29..593 13..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:53 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 108..668 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:53 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21142546..21142783 30..267 100 -> Plus
2R 21142836..21143046 268..478 100 -> Plus
2R 21143099..21143197 479..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:06 Download gff for BS14573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17030051..17030288 30..267 100 -> Plus
arm_2R 17030341..17030551 268..478 100 -> Plus
arm_2R 17030604..17030702 479..577 100   Plus

BS14573.pep Sequence

Translation from 16 to 576

> BS14573.pep
MEVGVTLNNELEEKISEAFCIFDTHGDKYIDSRNVGNVLRFLGCAPTEKE
VEDVIKATDSVDYPGEAHLVKFMEHVSKLLMDRQMEPASSEKLLEAFETL
DPENKKYLTKEYFGKLMAEEGEPFSAEELDAMWPVAIDPITGHIPYTFYI
NQLRHKPDIYEIAEVIKEELAQAEKEKGKKPQQPLF*

BS14573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-PA 186 CG9406-PA 1..186 1..186 972 100 Plus
CG11041-PB 155 CG11041-PB 5..151 7..153 569 70.1 Plus
Cam-PD 149 CG8472-PD 5..149 7..156 163 28.7 Plus
Cam-PC 149 CG8472-PC 5..149 7..156 163 28.7 Plus
Cam-PE 149 CG8472-PE 5..149 7..156 163 28.7 Plus