Clone Sequence Records
BS14573.3prime Sequence
591 bp (591 high quality bases) assembled on 2006-10-13
> BS14573.3prime
ATGGTCTAGAAAGCTTCTAAAACAGTGGTTGTTGTGGTTTCTTGCCCTTT
TCTTTTTCGGCTTGTGCTAGTTCCTCCTTGATAACCTCGGCAATTTCATA
GATATCAGGCTTGTGCCTGAGTTGATTTATGTAGAAGGTGTAGGGAATGT
GTCCAGTAATGGGATCAATTGCCACAGGCCACATAGCATCCAATTCTTCA
GCGGAGAAAGGTTCTCCTTCCTCCGCCATTAATTTGCCGAAGTACTCCTT
GGTCAGATATTTTTTATTTTCTGGATCCAGGGTCTCAAAGGCCTCGAGAA
GCTTTTCCGACGAGGCTGGTTCCATTTGTCGATCCATCAGCAGTTTGGAA
ACGTGTTCCATGAACTTCACCAAATGGGCTTCGCCTGGATAGTCGACGGA
ATCGGTGGCTTTAATGACATCTTCGACCTCTTTTTCGGTGGGCGCGCAAC
CTAAAAATCGGAGCACGTTGCCGACATTGCGGGAATCAATATACTTATCG
CCATGAGTATCAAATATGCAAAATGCTTCCGAAATCTTTTCCTCGAGTTC
GTTGTTTAGGGTAACACCAACTTCCATGTCGACTGATAACT
BS14573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-PA | 561 | CG9406-RA | 1..561 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 732 | CG9406-RA | 108..669 | 577..16 | 2810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21142545..21142783 | 565..327 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 21142836..21143046 | 326..116 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21143098..21143198 | 116..16 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:01:02 has no hits.
BS14573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:55 Download gff for
BS14573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-PA | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:57 Download gff for
BS14573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..676 | 8..581 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:51 Download gff for
BS14573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..676 | 8..581 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:51 Download gff for
BS14573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21142546..21142783 | 327..564 | 100 | -> | Minus |
2R | 21142836..21143046 | 116..326 | 100 | -> | Minus |
2R | 21143099..21143205 | 8..115 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:57 Download gff for
BS14573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17030051..17030288 | 327..564 | 100 | -> | Minus |
arm_2R | 17030341..17030551 | 116..326 | 100 | -> | Minus |
arm_2R | 17030604..17030710 | 8..115 | 96 | | Minus |
BS14573.5prime Sequence
591 bp (591 high quality bases) assembled on 2006-10-13
> BS14573.5prime
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTTAGAAGCTTTCTAGACC
BS14573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-PA | 561 | CG9406-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 732 | CG9406-RA | 108..669 | 17..578 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21142545..21142783 | 29..267 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 21142836..21143046 | 268..478 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21143098..21143198 | 478..578 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:28 has no hits.
BS14573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:55 Download gff for
BS14573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:15 Download gff for
BS14573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..676 | 13..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:43 Download gff for
BS14573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..676 | 13..586 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:43 Download gff for
BS14573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143099..21143205 | 479..586 | 96 | | Plus |
2R | 21142546..21142783 | 30..267 | 100 | -> | Plus |
2R | 21142836..21143046 | 268..478 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:15 Download gff for
BS14573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17030341..17030551 | 268..478 | 100 | -> | Plus |
arm_2R | 17030604..17030710 | 479..586 | 96 | | Plus |
arm_2R | 17030051..17030288 | 30..267 | 100 | -> | Plus |
BS14573.complete Sequence
593 bp assembled on 2006-11-01
GenBank Submission: FJ637710
> BS14573.complete
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTTAGAAGCTTTCTAGACCAT
BS14573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 561 | CG9406-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 732 | CG9406-RA | 108..669 | 17..578 | 2810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21142545..21142783 | 29..267 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 21142836..21143046 | 268..478 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21143098..21143198 | 478..578 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:05:01 has no hits.
BS14573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:03 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:04 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 29..593 | 13..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:06 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 108..668 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:03 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 29..593 | 13..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:53 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 108..668 | 17..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:53 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21142546..21142783 | 30..267 | 100 | -> | Plus |
2R | 21142836..21143046 | 268..478 | 100 | -> | Plus |
2R | 21143099..21143197 | 479..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:06 Download gff for
BS14573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17030051..17030288 | 30..267 | 100 | -> | Plus |
arm_2R | 17030341..17030551 | 268..478 | 100 | -> | Plus |
arm_2R | 17030604..17030702 | 479..577 | 100 | | Plus |
BS14573.pep Sequence
Translation from 16 to 576
> BS14573.pep
MEVGVTLNNELEEKISEAFCIFDTHGDKYIDSRNVGNVLRFLGCAPTEKE
VEDVIKATDSVDYPGEAHLVKFMEHVSKLLMDRQMEPASSEKLLEAFETL
DPENKKYLTKEYFGKLMAEEGEPFSAEELDAMWPVAIDPITGHIPYTFYI
NQLRHKPDIYEIAEVIKEELAQAEKEKGKKPQQPLF*
BS14573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-PA | 186 | CG9406-PA | 1..186 | 1..186 | 972 | 100 | Plus |
CG11041-PB | 155 | CG11041-PB | 5..151 | 7..153 | 569 | 70.1 | Plus |
Cam-PD | 149 | CG8472-PD | 5..149 | 7..156 | 163 | 28.7 | Plus |
Cam-PC | 149 | CG8472-PC | 5..149 | 7..156 | 163 | 28.7 | Plus |
Cam-PE | 149 | CG8472-PE | 5..149 | 7..156 | 163 | 28.7 | Plus |