Clone Sequence Records
BS14574.3prime Sequence
591 bp (591 high quality bases) assembled on 2006-10-13
> BS14574.3prime
ATGGTCTAGAAAGCTTTCATTTCGCAGGATGCATGCCGCTGCCCATATAC
TTGTCGAACAGGAATTCGCCCACCTGGTTTTGTGCCTTCTCCAATTGGCT
AATATAGTCGGCCAGAATCTTCTGGCCATCCACTTGCTCCTGCAGGAAAT
TGGCCTCGATGAAATCGCAGAGATTCGGATCCGCTTCCTTGCCAGCCAGG
GCGTGCAAATCGAGCAGATGCTTATTGACCTCCAGTTCCATTTTCATTGC
GTGCTTTAGTGCATCCAAGGTGCTGGCGAAACAGGGCAACGGCTGTGGTA
CACTGCTCAAAATGATTAGACCACCACGCTTGTTCATGTACGTCATGATC
TTCTCCGCGTGCTCCCGCTCCTCGACGCTCGCCTTTAGGAAGAATCGATG
CATTCCGGGTGAACTGATATCGGAGCGATCGAAATGGTAGGCCATGGCCA
GATACTGGTGGGATGCCTTCAACTCCATGTTGATCTGATCGTTTAGCTTC
TTCTCGCAACTTTTGGCGAAGTTCTGACGCACCAGCATGCACATGTGGCG
CCGAATGTCGCGGAAGCACCACGCCATGTCGACTGATAACT
BS14574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4349-PA | 561 | CG4349-RA | 1..561 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..660 | 580..16 | 2825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107473..13107900 | 16..443 | 2140 | 100 | Plus |
| X | 23542271 | X | 13107961..13108099 | 442..580 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:47:59 has no hits.
BS14574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:55 Download gff for
BS14574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4349-PA | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:49 Download gff for
BS14574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..665 | 12..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:30 Download gff for
BS14574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..665 | 12..585 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:30 Download gff for
BS14574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107468..13107899 | 12..442 | 99 | <- | Plus |
| X | 13107962..13108104 | 443..585 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:49 Download gff for
BS14574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001995..13002137 | 443..585 | 97 | | Plus |
| arm_X | 13001501..13001932 | 12..442 | 99 | <- | Plus |
BS14574.5prime Sequence
591 bp (591 high quality bases) assembled on 2006-10-13
> BS14574.5prime
GAAGTTATCAGTCGACATGGCGTGGTGCTTCCGCGACATTCGGCGCCACA
TGTGCATGCTGGTGCGTCAGAACTTCGCCAAAAGTTGCGAGAAGAAGCTA
AACGATCAGATCAACATGGAGTTGAAGGCATCCCACCAGTATCTGGCCAT
GGCCTACCATTTCGATCGCTCCGATATCAGTTCACCCGGAATGCATCGAT
TCTTCCTAAAGGCGAGCGTCGAGGAGCGGGAGCACGCGGAGAAGATCATG
ACGTACATGAACAAGCGTGGTGGTCTAATCATTTTGAGCAGTGTACCACA
GCCGTTGCCCTGTTTCGCCAGCACCTTGGATGCACTAAAGCACGCAATGA
AAATGGAACTGGAGGTCAATAAGCATCTGCTCGATTTGCACGCCCTGGCT
GGCAAGGAAGCGGATCCGAATCTCTGCGATTTCATCGAGGCCAATTTCCT
GCAGGAGCAAGTGGATGGCCAGAAGATTCTGGCCGACTATATTAGCCAAT
TGGAGAAGGCACAAAACCAGGTGGGCGAATTCCTGTTCGACAAGTATATG
GGCAGCGGCATGCATCCTGCGAAATGAAAGCTTTCTAGACC
BS14574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4349-PA | 561 | CG4349-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..660 | 14..578 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107473..13107900 | 578..151 | 2140 | 100 | Minus |
| X | 23542271 | X | 13107961..13108099 | 152..14 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:56 has no hits.
BS14574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:56 Download gff for
BS14574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4349-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:19 Download gff for
BS14574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..665 | 9..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:53 Download gff for
BS14574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..665 | 9..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:53 Download gff for
BS14574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107468..13107899 | 152..582 | 99 | <- | Minus |
| X | 13107962..13108104 | 9..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:19 Download gff for
BS14574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001501..13001932 | 152..582 | 99 | <- | Minus |
| arm_X | 13001995..13002137 | 9..151 | 97 | | Minus |
BS14574.complete Sequence
593 bp assembled on 2006-11-01
GenBank Submission: FJ637711
> BS14574.complete
GAAGTTATCAGTCGACATGGCGTGGTGCTTCCGCGACATTCGGCGCCACA
TGTGCATGCTGGTGCGTCAGAACTTCGCCAAAAGTTGCGAGAAGAAGCTA
AACGATCAGATCAACATGGAGTTGAAGGCATCCCACCAGTATCTGGCCAT
GGCCTACCATTTCGATCGCTCCGATATCAGTTCACCCGGAATGCATCGAT
TCTTCCTAAAGGCGAGCGTCGAGGAGCGGGAGCACGCGGAGAAGATCATG
ACGTACATGAACAAGCGTGGTGGTCTAATCATTTTGAGCAGTGTACCACA
GCCGTTGCCCTGTTTCGCCAGCACCTTGGATGCACTAAAGCACGCAATGA
AAATGGAACTGGAGGTCAATAAGCATCTGCTCGATTTGCACGCCCTGGCT
GGCAAGGAAGCGGATCCGAATCTCTGCGATTTCATCGAGGCCAATTTCCT
GCAGGAGCAAGTGGATGGCCAGAAGATTCTGGCCGACTATATTAGCCAAT
TGGAGAAGGCACAAAACCAGGTGGGCGAATTCCTGTTCGACAAGTATATG
GGCAGCGGCATGCATCCTGCGAAATGAAAGCTTTCTAGACCAT
BS14574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 561 | CG4349-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..660 | 14..578 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107473..13107900 | 578..151 | 2140 | 100 | Minus |
| X | 23542271 | X | 13107961..13108099 | 152..14 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:13:38 has no hits.
BS14574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:12 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:15 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:10:26 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 99..658 | 17..576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:12 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:40 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 99..658 | 17..576 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:40 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107475..13107899 | 152..576 | 100 | <- | Minus |
| X | 13107962..13108096 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:10:26 Download gff for
BS14574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001508..13001932 | 152..576 | 100 | <- | Minus |
| arm_X | 13001995..13002129 | 17..151 | 100 | | Minus |
BS14574.pep Sequence
Translation from 16 to 576
> BS14574.pep
MAWCFRDIRRHMCMLVRQNFAKSCEKKLNDQINMELKASHQYLAMAYHFD
RSDISSPGMHRFFLKASVEEREHAEKIMTYMNKRGGLIILSSVPQPLPCF
ASTLDALKHAMKMELEVNKHLLDLHALAGKEADPNLCDFIEANFLQEQVD
GQKILADYISQLEKAQNQVGEFLFDKYMGSGMHPAK*
BS14574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-PA | 186 | CG4349-PA | 1..186 | 1..186 | 979 | 100 | Plus |
| Fer1HCH-PJ | 169 | CG2216-PJ | 4..167 | 23..176 | 225 | 35.5 | Plus |
| Fer1HCH-PD | 205 | CG2216-PD | 40..203 | 23..176 | 225 | 35.5 | Plus |
| Fer1HCH-PC | 205 | CG2216-PC | 40..203 | 23..176 | 225 | 35.5 | Plus |
| Fer1HCH-PB | 205 | CG2216-PB | 40..203 | 23..176 | 225 | 35.5 | Plus |
