Clone Sequence Records
BS14576.3prime Sequence
684 bp (684 high quality bases) assembled on 2006-10-13
> BS14576.3prime
ATGGTCTAGAAAGCTTTCATTTGTCCATCGCCGTGCCAGCAGGATTAGCC
TCTCCACCATCGCCGTCCACATCCGCCTGCTCGATAGCCTTGGGCGCCGT
GGGATCGGACACGCTGCCAAAGTAATTGCCCGTGGGCTCAATCTCGATCT
CGCGCTCCACGTCGTCCAGTTTCGGTGGTGCTGGCACCGTAATCATCAGT
ATTCCGTCCGCAGAGAAGGTGGCCCGTGCCTGTGTGGCATCGTAGTGCCG
TGGTAGCTTGTAGGATCGCGTAAACTCGCGAGTGATGCACAACTGACCCT
TCTCCGCCCGGTCATCCGCCTGCTTGCCCTCCACGCACACGGTGTCGCTG
TTTTTGGCCTTCACCGTGAGCTCAGAGATCTGAAAGTGGTGCACGTCCAG
CACCACCTTGAAGGTGCCCCGACCCAGGGAGTCCGGTTCGGTGCCGGTCT
CTATGACCACTCGCCCAACCAGACAGGATCCATGGCACCAGGCACTGTCG
TCCATCCGCAAGTGAAAGTCCCGCGCACATACGTCCAGGTCGTGGGAGAG
ATAGTAGTGCCTCTGCCGGCACTTGGACTCCCCGGTGGACCAGTGGCGAC
GCGGCGGTTGCCAGTGATGGTGACCATGCTCGTGATCATGCTCCCAATCC
CAGTCCCAGTGGATGGGCATGTCGACTGATAACT
BS14576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-PA | 654 | CG13133-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 1182 | CG13133-RA | 154..809 | 671..16 | 3280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10091581..10092236 | 16..671 | 3280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:26:37 has no hits.
BS14576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:56 Download gff for
BS14576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:42 Download gff for
BS14576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 13..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:30 Download gff for
BS14576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 13..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:30 Download gff for
BS14576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10091579..10092240 | 13..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:42 Download gff for
BS14576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10091579..10092240 | 13..678 | 99 | | Plus |
BS14576.5prime Sequence
684 bp (684 high quality bases) assembled on 2006-10-13
> BS14576.5prime
GAAGTTATCAGTCGACATGCCCATCCACTGGGACTGGGATTGGGAGCATG
ATCACGAGCATGGTCACCATCACTGGCAACCGCCGCGTCGCCACTGGTCC
ACCGGGGAGTCCAAGTGCCGGCAGAGGCACTACTATCTCTCCCACGACCT
GGACGTATGTGCGCGGGACTTTCACTTGCGGATGGACGACAGTGCCTGGT
GCCATGGATCCTGTCTGGTTGGGCGAGTGGTCATAGAGACCGGCACCGAA
CCGGACTCCCTGGGTCGGGGCACCTTCAAGGTGGTGCTGGACGTGCACCA
CTTTCAGATCTCTGAGCTCACGGTGAAGGCCAAAAACAGCGACACCGTGT
GCGTGGAGGGCAAGCAGGCGGATGACCGGGCGGAGAAGGGTCAGTTGTGC
ATCACTCGCGAGTTTACGCGATCCTACAAGCTACCACGGCACTACGATGC
CACACAGGCACGGGCCACCTTCTCTGCGGACGGAATACTGATGATTACGG
TGCCAGCACCACCGAAACTGGACGACGTGGAGCGCGAGATCGAGATTGAG
CCCACGGGCAATTACTTTGGCAGCGTGTCCGATCCCACGGCGCCCAAGGC
TATCGAGCAGGCGGATGTGGACGGCGATGGTGGAGAGGCTAATCCTGCTG
GCACGGCGATGGACAAATGAAAGCTTTCTAGACC
BS14576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-PA | 654 | CG13133-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 1182 | CG13133-RA | 154..809 | 16..671 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10091581..10092236 | 671..16 | 3280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:07:44 has no hits.
BS14576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:56 Download gff for
BS14576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:29 Download gff for
BS14576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 9..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:44 Download gff for
BS14576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 150..811 | 9..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:44 Download gff for
BS14576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10091579..10092240 | 9..674 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:29 Download gff for
BS14576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10091579..10092240 | 9..674 | 99 | | Minus |
BS14576.complete Sequence
686 bp assembled on 2006-11-01
GenBank Submission: FJ637712
> BS14576.complete
GAAGTTATCAGTCGACATGCCCATCCACTGGGACTGGGATTGGGAGCATG
ATCACGAGCATGGTCACCATCACTGGCAACCGCCGCGTCGCCACTGGTCC
ACCGGGGAGTCCAAGTGCCGGCAGAGGCACTACTATCTCTCCCACGACCT
GGACGTATGTGCGCGGGACTTTCACTTGCGGATGGACGACAGTGCCTGGT
GCCATGGATCCTGTCTGGTTGGGCGAGTGGTCATAGAGACCGGCACCGAA
CCGGACTCCCTGGGTCGGGGCACCTTCAAGGTGGTGCTGGACGTGCACCA
CTTTCAGATCTCTGAGCTCACGGTGAAGGCCAAAAACAGCGACACCGTGT
GCGTGGAGGGCAAGCAGGCGGATGACCGGGCGGAGAAGGGTCAGTTGTGC
ATCACTCGCGAGTTTACGCGATCCTACAAGCTACCACGGCACTACGATGC
CACACAGGCACGGGCCACCTTCTCTGCGGACGGAATACTGATGATTACGG
TGCCAGCACCACCGAAACTGGACGACGTGGAGCGCGAGATCGAGATTGAG
CCCACGGGCAATTACTTTGGCAGCGTGTCCGATCCCACGGCGCCCAAGGC
TATCGAGCAGGCGGATGTGGACGGCGATGGTGGAGAGGCTAATCCTGCTG
GCACGGCGATGGACAAATGAAAGCTTTCTAGACCAT
BS14576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 654 | CG13133-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-RA | 1182 | CG13133-RA | 154..809 | 16..671 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10091581..10092236 | 671..16 | 3280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:16:40 has no hits.
BS14576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:15 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:04 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 180..841 | 9..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:43 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 155..807 | 17..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:16 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:57 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13133-RA | 155..807 | 17..669 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:57 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10091583..10092235 | 17..669 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:43 Download gff for
BS14576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10091583..10092235 | 17..669 | 100 | | Minus |
BS14576.pep Sequence
Translation from 16 to 669
> BS14576.pep
MPIHWDWDWEHDHEHGHHHWQPPRRHWSTGESKCRQRHYYLSHDLDVCAR
DFHLRMDDSAWCHGSCLVGRVVIETGTEPDSLGRGTFKVVLDVHHFQISE
LTVKAKNSDTVCVEGKQADDRAEKGQLCITREFTRSYKLPRHYDATQARA
TFSADGILMITVPAPPKLDDVEREIEIEPTGNYFGSVSDPTAPKAIEQAD
VDGDGGEANPAGTAMDK*
BS14576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13133-PA | 217 | CG13133-PA | 1..217 | 1..217 | 1209 | 100 | Plus |
| Hsp27-PB | 213 | CG4466-PB | 84..210 | 81..216 | 192 | 37.7 | Plus |
| Hsp27-PA | 213 | CG4466-PA | 84..210 | 81..216 | 192 | 37.7 | Plus |
| Hsp23-PB | 186 | CG4463-PB | 66..180 | 82..198 | 185 | 38.7 | Plus |
| Hsp23-PA | 186 | CG4463-PA | 66..180 | 82..198 | 185 | 38.7 | Plus |
