Clone BS14577 Report

Search the DGRC for BS14577

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG13896-RA
Protein status:BS14577.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14577.3prime Sequence

663 bp (663 high quality bases) assembled on 2006-10-13

> BS14577.3prime
ATGGTCTAGAAAGCTTCTACGTTTGATCCACCTCGAAGTCCTTGATCTGG
GCTGGATATTGAATGGCGTGCTCCACCTGTATTAGCAGTCCTATGGCCCT
GAAATTATCATGGATCATGGCGTACTCCTGGAGCGCTCTTAGGTGTCTCA
ATGCCTCTTCGTCGTTGCTGATGGAGATCTCGGCCGCAGACTCTGACAAA
TCATTAGTATTGGGTTCGGCGGCATTAAAGACTGTAAACTGTTCCCCATC
CCGCTGCCGATCCGTTTGCACTTCGTAGTCCTTCTGGATCTTGATATCGA
CATCATCCAATGGCTGCTTTCGTTTGCGATACGTACGCATTTGGCGGGGA
ATAACTGTGCTGACAGTGGTGCCCATAGACAGCATCCTGCCTTTCTGGAT
ACCGGTCTCCAAACTGACCACCGCTTCATCGAAATCATTGATGGAAAGTT
CCTGCGGCGGTGGGACAGGGTCATCCTTTAGAATTTCGGACATCTCGTCG
TAGAACTGCCAGTTTGGATGGAAATGCGGTACCTTCGCCAGGAGCTTGCT
CCTTATGCTATAGTAGGTCTTCTTCAGGTTCCTAAATTTTCGATCCAGCT
GAACTGCATCGATATCTGTCATTCCCTGGCTTTCAAGGGCAACGACCATG
TCGACTGATAACT

BS14577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-PA 633 CG13896-RA 1..633 649..17 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-RB 972 CG13896-RB 218..850 649..17 3165 100 Minus
CG13896-RC 974 CG13896-RC 220..852 649..17 3165 100 Minus
CG13896-RA 1000 CG13896-RA 246..878 649..17 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 710942..711574 17..649 3165 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:53:19 has no hits.

BS14577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:57 Download gff for BS14577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13896-PA 1..633 17..649 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:31 Download gff for BS14577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13896-RA 243..878 17..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:05 Download gff for BS14577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13896-RA 243..878 17..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:05 Download gff for BS14577.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 710942..711577 17..652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:31 Download gff for BS14577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 710942..711577 17..652 99   Plus

BS14577.5prime Sequence

663 bp (663 high quality bases) assembled on 2006-10-13

> BS14577.5prime
GAAGTTATCAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAG
ATATCGATGCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACC
TACTATAGCATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCC
AAACTGGCAGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTG
TCCCACCGCCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTC
AGTTTGGAGACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCAC
TGTCAGCACAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGC
AGCCATTGGATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAA
ACGGATCGGCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGA
ACCCAATACTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCA
ACGACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATG
ATCCATGATAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGC
CATTCAATATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGTAGA
AGCTTTCTAGACC

BS14577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-PA 633 CG13896-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-RB 972 CG13896-RB 218..850 17..649 3165 100 Plus
CG13896-RC 974 CG13896-RC 220..852 17..649 3165 100 Plus
CG13896-RA 1000 CG13896-RA 246..878 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 710942..711574 649..17 3165 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:18:36 has no hits.

BS14577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:57 Download gff for BS14577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13896-PA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:34 Download gff for BS14577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13896-RA 243..878 14..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:49 Download gff for BS14577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13896-RA 243..878 14..649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:49 Download gff for BS14577.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 710942..711577 14..649 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:34 Download gff for BS14577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 710942..711577 14..649 99   Minus

BS14577.complete Sequence

665 bp assembled on 2006-11-01

GenBank Submission: FJ637713

> BS14577.complete
GAAGTTATCAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAG
ATATCGATGCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACC
TACTATAGCATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCC
AAACTGGCAGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTG
TCCCACCGCCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTC
AGTTTGGAGACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCAC
TGTCAGCACAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGC
AGCCATTGGATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAA
ACGGATCGGCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGA
ACCCAATACTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCA
ACGACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATG
ATCCATGATAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGC
CATTCAATATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGTAGA
AGCTTTCTAGACCAT

BS14577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-RB 633 CG13896-PB 1..633 17..649 3165 100 Plus
CG13896-RC 633 CG13896-PC 1..633 17..649 3165 100 Plus
CG13896-RA 633 CG13896-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-RB 972 CG13896-RB 218..850 17..649 3165 100 Plus
CG13896-RC 974 CG13896-RC 220..852 17..649 3165 100 Plus
CG13896-RA 1000 CG13896-RA 246..878 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 710942..711574 649..17 3165 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:30:48 has no hits.

BS14577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:53 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13896-RB 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:44 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13896-RB 215..850 14..649 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:43 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13896-RA 246..878 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:53 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13896-RB 215..850 14..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:46 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
CG13896-RA 246..878 17..649 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:46 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
3L 710942..711574 17..649 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:43 Download gff for BS14577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 710942..711574 17..649 100   Minus

BS14577.pep Sequence

Translation from 16 to 648

> BS14577.pep
MVVALESQGMTDIDAVQLDRKFRNLKKTYYSIRSKLLAKVPHFHPNWQFY
DEMSEILKDDPVPPPQELSINDFDEAVVSLETGIQKGRMLSMGTTVSTVI
PRQMRTYRKRKQPLDDVDIKIQKDYEVQTDRQRDGEQFTVFNAAEPNTND
LSESAAEISISNDEEALRHLRALQEYAMIHDNFRAIGLLIQVEHAIQYPA
QIKDFEVDQT*

BS14577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13896-PB 210 CG13896-PB 1..210 1..210 1075 100 Plus
CG13896-PC 210 CG13896-PC 1..210 1..210 1075 100 Plus
CG13896-PA 210 CG13896-PA 1..210 1..210 1075 100 Plus