Clone Sequence Records
BS14577.3prime Sequence
663 bp (663 high quality bases) assembled on 2006-10-13
> BS14577.3prime
ATGGTCTAGAAAGCTTCTACGTTTGATCCACCTCGAAGTCCTTGATCTGG
GCTGGATATTGAATGGCGTGCTCCACCTGTATTAGCAGTCCTATGGCCCT
GAAATTATCATGGATCATGGCGTACTCCTGGAGCGCTCTTAGGTGTCTCA
ATGCCTCTTCGTCGTTGCTGATGGAGATCTCGGCCGCAGACTCTGACAAA
TCATTAGTATTGGGTTCGGCGGCATTAAAGACTGTAAACTGTTCCCCATC
CCGCTGCCGATCCGTTTGCACTTCGTAGTCCTTCTGGATCTTGATATCGA
CATCATCCAATGGCTGCTTTCGTTTGCGATACGTACGCATTTGGCGGGGA
ATAACTGTGCTGACAGTGGTGCCCATAGACAGCATCCTGCCTTTCTGGAT
ACCGGTCTCCAAACTGACCACCGCTTCATCGAAATCATTGATGGAAAGTT
CCTGCGGCGGTGGGACAGGGTCATCCTTTAGAATTTCGGACATCTCGTCG
TAGAACTGCCAGTTTGGATGGAAATGCGGTACCTTCGCCAGGAGCTTGCT
CCTTATGCTATAGTAGGTCTTCTTCAGGTTCCTAAATTTTCGATCCAGCT
GAACTGCATCGATATCTGTCATTCCCTGGCTTTCAAGGGCAACGACCATG
TCGACTGATAACT
BS14577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-PA | 633 | CG13896-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-RB | 972 | CG13896-RB | 218..850 | 649..17 | 3165 | 100 | Minus |
CG13896-RC | 974 | CG13896-RC | 220..852 | 649..17 | 3165 | 100 | Minus |
CG13896-RA | 1000 | CG13896-RA | 246..878 | 649..17 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 710942..711574 | 17..649 | 3165 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:53:19 has no hits.
BS14577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:57 Download gff for
BS14577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:31 Download gff for
BS14577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RA | 243..878 | 17..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:05 Download gff for
BS14577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RA | 243..878 | 17..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:05 Download gff for
BS14577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 710942..711577 | 17..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:31 Download gff for
BS14577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 710942..711577 | 17..652 | 99 | | Plus |
BS14577.5prime Sequence
663 bp (663 high quality bases) assembled on 2006-10-13
> BS14577.5prime
GAAGTTATCAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAG
ATATCGATGCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACC
TACTATAGCATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCC
AAACTGGCAGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTG
TCCCACCGCCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTC
AGTTTGGAGACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCAC
TGTCAGCACAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGC
AGCCATTGGATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAA
ACGGATCGGCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGA
ACCCAATACTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCA
ACGACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATG
ATCCATGATAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGC
CATTCAATATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGTAGA
AGCTTTCTAGACC
BS14577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-PA | 633 | CG13896-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-RB | 972 | CG13896-RB | 218..850 | 17..649 | 3165 | 100 | Plus |
CG13896-RC | 974 | CG13896-RC | 220..852 | 17..649 | 3165 | 100 | Plus |
CG13896-RA | 1000 | CG13896-RA | 246..878 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 710942..711574 | 649..17 | 3165 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:18:36 has no hits.
BS14577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:57 Download gff for
BS14577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:34 Download gff for
BS14577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RA | 243..878 | 14..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:49 Download gff for
BS14577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RA | 243..878 | 14..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:49 Download gff for
BS14577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 710942..711577 | 14..649 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:34 Download gff for
BS14577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 710942..711577 | 14..649 | 99 | | Minus |
BS14577.complete Sequence
665 bp assembled on 2006-11-01
GenBank Submission: FJ637713
> BS14577.complete
GAAGTTATCAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAG
ATATCGATGCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACC
TACTATAGCATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCC
AAACTGGCAGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTG
TCCCACCGCCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTC
AGTTTGGAGACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCAC
TGTCAGCACAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGC
AGCCATTGGATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAA
ACGGATCGGCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGA
ACCCAATACTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCA
ACGACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATG
ATCCATGATAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGC
CATTCAATATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGTAGA
AGCTTTCTAGACCAT
BS14577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-RB | 633 | CG13896-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
CG13896-RC | 633 | CG13896-PC | 1..633 | 17..649 | 3165 | 100 | Plus |
CG13896-RA | 633 | CG13896-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-RB | 972 | CG13896-RB | 218..850 | 17..649 | 3165 | 100 | Plus |
CG13896-RC | 974 | CG13896-RC | 220..852 | 17..649 | 3165 | 100 | Plus |
CG13896-RA | 1000 | CG13896-RA | 246..878 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 710942..711574 | 649..17 | 3165 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:48 has no hits.
BS14577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:53 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RB | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:44 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RB | 215..850 | 14..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:43 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RA | 246..878 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:53 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RB | 215..850 | 14..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:46 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13896-RA | 246..878 | 17..649 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:46 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 710942..711574 | 17..649 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:43 Download gff for
BS14577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 710942..711574 | 17..649 | 100 | | Minus |
BS14577.pep Sequence
Translation from 16 to 648
> BS14577.pep
MVVALESQGMTDIDAVQLDRKFRNLKKTYYSIRSKLLAKVPHFHPNWQFY
DEMSEILKDDPVPPPQELSINDFDEAVVSLETGIQKGRMLSMGTTVSTVI
PRQMRTYRKRKQPLDDVDIKIQKDYEVQTDRQRDGEQFTVFNAAEPNTND
LSESAAEISISNDEEALRHLRALQEYAMIHDNFRAIGLLIQVEHAIQYPA
QIKDFEVDQT*
BS14577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13896-PB | 210 | CG13896-PB | 1..210 | 1..210 | 1075 | 100 | Plus |
CG13896-PC | 210 | CG13896-PC | 1..210 | 1..210 | 1075 | 100 | Plus |
CG13896-PA | 210 | CG13896-PA | 1..210 | 1..210 | 1075 | 100 | Plus |