Clone BS14580 Report

Search the DGRC for BS14580

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptRab9Fb-RA
Protein status:BS14580.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14580.3prime Sequence

675 bp (675 high quality bases) assembled on 2006-10-13

> BS14580.3prime
ATGGTCTAGAAAGCTTTTAACAGCAGGTATTGCTGTCTTTGGCCCTCTGC
CGATCTTTGCCAGCTAAATTGATTGGTTCATCCGGTGGCTCTGCAGTGTC
CTCCGTTTCTTGCCCACCTGACAAGCGATTTGGGGTATGAATCACAAGAC
GATTGTATATGCCAACTGACAACATGTTGAATACGTCATTTACATTCGCG
CCACTCTTGGCGGAAACCTCATAAAAGCCGAGTGCCCGATGATTGGCATA
GTTGAAACCCTGCTCCATGCGCACCTGACGATTATCCAGATCATCACACT
TGTTGCCCACCAGCATGACGTTCACACTTTCCGAAGACATGCGCCGTATC
TCCTTCAGCCAGCCATCGATGTTTCGGAAACTTTTGGACGACGTTATGTC
GTAAACGAGCAGTATGCCATGGGCACCGCGATAATAGGATGGCAGCAGCG
ACTTAAAGCGCTCATCGCCGGCGGTATCCCAGATCTGCAGCATAACCATC
CGACCGGCCAACTCCACGTTGCGCACCCTGAAATCCATGCCCACCGTGCA
CACGTGTTTCTCGGTGAATCGGTTATCCGAGAAACGCATCAGCAGGCAGG
ATTTGCCCACGCCGATGTCACCCAGGACGAGAATCTTAAACAGATAGTCG
TATTGGCTCATGTCGACTGATAACT

BS14580.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32670-PA 645 CG32670-RA 1..645 661..17 3225 100 Minus
CG2885-PA 588 RabX2-RA 169..325 493..337 460 91.7 Minus
CG2885-PA 588 RabX2-RA 1..105 661..557 375 94.2 Minus
CG9807-PA 594 CG9807-RA 242..327 426..341 355 96.5 Minus
CG32678-PA 594 Rab9D-RA 242..327 426..341 355 96.5 Minus
CG32671-PA 594 CG32671-RA 242..327 426..341 355 96.5 Minus
CG32673-PA 594 CG32673-RA 242..327 426..341 355 96.5 Minus
CG9807-PA 594 CG9807-RA 1..101 661..561 305 92 Minus
CG32678-PA 594 Rab9D-RA 1..99 661..563 295 91.9 Minus
CG32671-PA 594 CG32671-RA 1..99 661..563 295 91.9 Minus
CG32673-PA 594 CG32673-RA 1..99 661..563 295 91.9 Minus
CG2885-PA 588 RabX2-RA 385..461 277..201 210 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 878 CG32670-RA 68..712 661..17 3225 100 Minus
RabX2-RA 791 CG2885-RA 68..720 661..17 1625 83.9 Minus
Rab9Db-RA 871 CG9807-RA 68..712 661..26 1280 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951775..10952419 17..661 3225 100 Plus
X 23542271 X 10417496..10418148 661..17 1540 83.5 Minus
X 23542271 X 10622514..10623158 26..661 1220 80 Plus
X 23542271 X 10589182..10589826 661..26 1175 79.5 Minus
X 23542271 X 10661114..10661758 26..661 1175 79.5 Plus
X 23542271 X 10950319..10950963 26..661 1160 79.4 Plus
Blast to na_te.dros performed on 2015-02-10 21:30:06 has no hits.

BS14580.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:59 Download gff for BS14580.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32670-PA 1..645 17..661 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:28 Download gff for BS14580.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..718 8..661 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:26 Download gff for BS14580.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..718 8..661 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:26 Download gff for BS14580.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10951769..10952419 8..661 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:28 Download gff for BS14580.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845802..10846452 8..661 99   Plus

BS14580.5prime Sequence

675 bp (675 high quality bases) assembled on 2006-10-13

> BS14580.5prime
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTTAAAAGCTTTCTAGACC

BS14580.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32670-PA 645 CG32670-RA 1..645 17..661 3225 100 Plus
CG2885-PA 588 RabX2-RA 169..325 185..341 460 91.7 Plus
CG2885-PA 588 RabX2-RA 1..105 17..121 375 94.2 Plus
CG9807-PA 594 CG9807-RA 242..327 252..337 355 96.5 Plus
CG32678-PA 594 Rab9D-RA 242..327 252..337 355 96.5 Plus
CG32671-PA 594 CG32671-RA 242..327 252..337 355 96.5 Plus
CG32673-PA 594 CG32673-RA 242..327 252..337 355 96.5 Plus
CG9807-PA 594 CG9807-RA 1..101 17..117 305 92 Plus
CG32678-PA 594 Rab9D-RA 1..99 17..115 295 91.9 Plus
CG32671-PA 594 CG32671-RA 1..99 17..115 295 91.9 Plus
CG32673-PA 594 CG32673-RA 1..99 17..115 295 91.9 Plus
CG2885-PA 588 RabX2-RA 385..461 401..477 210 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 878 CG32670-RA 68..712 17..661 3225 100 Plus
RabX2-RA 791 CG2885-RA 68..720 17..661 1625 83.9 Plus
Rab9Db-RA 871 CG9807-RA 68..712 17..652 1280 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951775..10952419 661..17 3225 100 Minus
X 23542271 X 10417496..10418148 17..661 1540 83.5 Plus
X 23542271 X 10622514..10623158 652..17 1220 80 Minus
X 23542271 X 10589182..10589826 17..652 1175 79.5 Plus
X 23542271 X 10661114..10661758 652..17 1175 79.5 Minus
X 23542271 X 10950319..10950963 652..17 1160 79.4 Minus
Blast to na_te.dros performed on 2015-02-12 03:56:17 has no hits.

BS14580.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:00 Download gff for BS14580.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32670-PA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:23 Download gff for BS14580.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..718 17..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:29 Download gff for BS14580.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..718 17..670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:29 Download gff for BS14580.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10951769..10952419 17..670 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:23 Download gff for BS14580.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845802..10846452 17..670 99   Minus

BS14580.complete Sequence

677 bp assembled on 2006-11-01

GenBank Submission: FJ637714

> BS14580.complete
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTTAAAAGCTTTCTAGACCAT

BS14580.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 645 CG32670-PA 1..645 17..661 3225 100 Plus
RabX2-RA 588 CG2885-PA 1..513 17..529 1500 86.2 Plus
Rab9Db-RA 594 CG9807-PA 1..488 17..498 1130 82.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 878 CG32670-RA 68..712 17..661 3225 100 Plus
RabX2-RA 791 CG2885-RA 68..720 17..661 1540 83.5 Plus
Rab9Db-RA 871 CG9807-RA 68..712 17..652 1220 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951775..10952419 661..17 3225 100 Minus
X 23542271 X 10417496..10418148 17..661 1540 83.5 Plus
X 23542271 X 10622514..10623158 652..17 1220 80 Minus
X 23542271 X 10589182..10589826 17..652 1175 79.5 Plus
X 23542271 X 10661114..10661758 652..17 1175 79.5 Minus
X 23542271 X 10950319..10950963 652..17 1160 79.4 Minus
Blast to na_te.dros performed on 2014-11-27 10:54:00 has no hits.

BS14580.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:00 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:54 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..718 17..670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:06 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..710 17..659 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:00 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..718 17..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:41 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..710 17..659 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:41 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
X 10951777..10952419 17..659 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:06 Download gff for BS14580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845810..10846452 17..659 100   Minus

BS14580.pep Sequence

Translation from 16 to 660

> BS14580.pep
MSQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVE
LAGRMVMLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDG
WLKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYANHRALGFYEVS
AKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPINLA
GKDRQRAKDSNTCC*

BS14580.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-PA 214 CG32670-PA 1..214 1..214 1125 100 Plus
RabX2-PA 195 CG2885-PA 1..195 1..194 687 67.2 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..194 577 60.9 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..194 573 60.4 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..194 571 59.9 Plus