Clone Sequence Records
BS14580.3prime Sequence
675 bp (675 high quality bases) assembled on 2006-10-13
> BS14580.3prime
ATGGTCTAGAAAGCTTTTAACAGCAGGTATTGCTGTCTTTGGCCCTCTGC
CGATCTTTGCCAGCTAAATTGATTGGTTCATCCGGTGGCTCTGCAGTGTC
CTCCGTTTCTTGCCCACCTGACAAGCGATTTGGGGTATGAATCACAAGAC
GATTGTATATGCCAACTGACAACATGTTGAATACGTCATTTACATTCGCG
CCACTCTTGGCGGAAACCTCATAAAAGCCGAGTGCCCGATGATTGGCATA
GTTGAAACCCTGCTCCATGCGCACCTGACGATTATCCAGATCATCACACT
TGTTGCCCACCAGCATGACGTTCACACTTTCCGAAGACATGCGCCGTATC
TCCTTCAGCCAGCCATCGATGTTTCGGAAACTTTTGGACGACGTTATGTC
GTAAACGAGCAGTATGCCATGGGCACCGCGATAATAGGATGGCAGCAGCG
ACTTAAAGCGCTCATCGCCGGCGGTATCCCAGATCTGCAGCATAACCATC
CGACCGGCCAACTCCACGTTGCGCACCCTGAAATCCATGCCCACCGTGCA
CACGTGTTTCTCGGTGAATCGGTTATCCGAGAAACGCATCAGCAGGCAGG
ATTTGCCCACGCCGATGTCACCCAGGACGAGAATCTTAAACAGATAGTCG
TATTGGCTCATGTCGACTGATAACT
BS14580.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32670-PA | 645 | CG32670-RA | 1..645 | 661..17 | 3225 | 100 | Minus |
CG2885-PA | 588 | RabX2-RA | 169..325 | 493..337 | 460 | 91.7 | Minus |
CG2885-PA | 588 | RabX2-RA | 1..105 | 661..557 | 375 | 94.2 | Minus |
CG9807-PA | 594 | CG9807-RA | 242..327 | 426..341 | 355 | 96.5 | Minus |
CG32678-PA | 594 | Rab9D-RA | 242..327 | 426..341 | 355 | 96.5 | Minus |
CG32671-PA | 594 | CG32671-RA | 242..327 | 426..341 | 355 | 96.5 | Minus |
CG32673-PA | 594 | CG32673-RA | 242..327 | 426..341 | 355 | 96.5 | Minus |
CG9807-PA | 594 | CG9807-RA | 1..101 | 661..561 | 305 | 92 | Minus |
CG32678-PA | 594 | Rab9D-RA | 1..99 | 661..563 | 295 | 91.9 | Minus |
CG32671-PA | 594 | CG32671-RA | 1..99 | 661..563 | 295 | 91.9 | Minus |
CG32673-PA | 594 | CG32673-RA | 1..99 | 661..563 | 295 | 91.9 | Minus |
CG2885-PA | 588 | RabX2-RA | 385..461 | 277..201 | 210 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 878 | CG32670-RA | 68..712 | 661..17 | 3225 | 100 | Minus |
RabX2-RA | 791 | CG2885-RA | 68..720 | 661..17 | 1625 | 83.9 | Minus |
Rab9Db-RA | 871 | CG9807-RA | 68..712 | 661..26 | 1280 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10951775..10952419 | 17..661 | 3225 | 100 | Plus |
X | 23542271 | X | 10417496..10418148 | 661..17 | 1540 | 83.5 | Minus |
X | 23542271 | X | 10622514..10623158 | 26..661 | 1220 | 80 | Plus |
X | 23542271 | X | 10589182..10589826 | 661..26 | 1175 | 79.5 | Minus |
X | 23542271 | X | 10661114..10661758 | 26..661 | 1175 | 79.5 | Plus |
X | 23542271 | X | 10950319..10950963 | 26..661 | 1160 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:30:06 has no hits.
BS14580.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:59 Download gff for
BS14580.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32670-PA | 1..645 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:28 Download gff for
BS14580.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..718 | 8..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:26 Download gff for
BS14580.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..718 | 8..661 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:26 Download gff for
BS14580.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10951769..10952419 | 8..661 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:28 Download gff for
BS14580.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10845802..10846452 | 8..661 | 99 | | Plus |
BS14580.5prime Sequence
675 bp (675 high quality bases) assembled on 2006-10-13
> BS14580.5prime
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTTAAAAGCTTTCTAGACC
BS14580.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32670-PA | 645 | CG32670-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG2885-PA | 588 | RabX2-RA | 169..325 | 185..341 | 460 | 91.7 | Plus |
CG2885-PA | 588 | RabX2-RA | 1..105 | 17..121 | 375 | 94.2 | Plus |
CG9807-PA | 594 | CG9807-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG32678-PA | 594 | Rab9D-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG32671-PA | 594 | CG32671-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG32673-PA | 594 | CG32673-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG9807-PA | 594 | CG9807-RA | 1..101 | 17..117 | 305 | 92 | Plus |
CG32678-PA | 594 | Rab9D-RA | 1..99 | 17..115 | 295 | 91.9 | Plus |
CG32671-PA | 594 | CG32671-RA | 1..99 | 17..115 | 295 | 91.9 | Plus |
CG32673-PA | 594 | CG32673-RA | 1..99 | 17..115 | 295 | 91.9 | Plus |
CG2885-PA | 588 | RabX2-RA | 385..461 | 401..477 | 210 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 878 | CG32670-RA | 68..712 | 17..661 | 3225 | 100 | Plus |
RabX2-RA | 791 | CG2885-RA | 68..720 | 17..661 | 1625 | 83.9 | Plus |
Rab9Db-RA | 871 | CG9807-RA | 68..712 | 17..652 | 1280 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10951775..10952419 | 661..17 | 3225 | 100 | Minus |
X | 23542271 | X | 10417496..10418148 | 17..661 | 1540 | 83.5 | Plus |
X | 23542271 | X | 10622514..10623158 | 652..17 | 1220 | 80 | Minus |
X | 23542271 | X | 10589182..10589826 | 17..652 | 1175 | 79.5 | Plus |
X | 23542271 | X | 10661114..10661758 | 652..17 | 1175 | 79.5 | Minus |
X | 23542271 | X | 10950319..10950963 | 652..17 | 1160 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:56:17 has no hits.
BS14580.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:00 Download gff for
BS14580.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32670-PA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:23 Download gff for
BS14580.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..718 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:29 Download gff for
BS14580.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..718 | 17..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:29 Download gff for
BS14580.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10951769..10952419 | 17..670 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:23 Download gff for
BS14580.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10845802..10846452 | 17..670 | 99 | | Minus |
BS14580.complete Sequence
677 bp assembled on 2006-11-01
GenBank Submission: FJ637714
> BS14580.complete
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTTAAAAGCTTTCTAGACCAT
BS14580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 645 | CG32670-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
RabX2-RA | 588 | CG2885-PA | 1..513 | 17..529 | 1500 | 86.2 | Plus |
Rab9Db-RA | 594 | CG9807-PA | 1..488 | 17..498 | 1130 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 878 | CG32670-RA | 68..712 | 17..661 | 3225 | 100 | Plus |
RabX2-RA | 791 | CG2885-RA | 68..720 | 17..661 | 1540 | 83.5 | Plus |
Rab9Db-RA | 871 | CG9807-RA | 68..712 | 17..652 | 1220 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10951775..10952419 | 661..17 | 3225 | 100 | Minus |
X | 23542271 | X | 10417496..10418148 | 17..661 | 1540 | 83.5 | Plus |
X | 23542271 | X | 10622514..10623158 | 652..17 | 1220 | 80 | Minus |
X | 23542271 | X | 10589182..10589826 | 17..652 | 1175 | 79.5 | Plus |
X | 23542271 | X | 10661114..10661758 | 652..17 | 1175 | 79.5 | Minus |
X | 23542271 | X | 10950319..10950963 | 652..17 | 1160 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:54:00 has no hits.
BS14580.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:00 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:54 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..718 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:06 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..710 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:00 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..718 | 17..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:41 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..710 | 17..659 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:41 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10951777..10952419 | 17..659 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:06 Download gff for
BS14580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10845810..10846452 | 17..659 | 100 | | Minus |
BS14580.pep Sequence
Translation from 16 to 660
> BS14580.pep
MSQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVE
LAGRMVMLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDG
WLKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYANHRALGFYEVS
AKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPINLA
GKDRQRAKDSNTCC*
BS14580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-PA | 214 | CG32670-PA | 1..214 | 1..214 | 1125 | 100 | Plus |
RabX2-PA | 195 | CG2885-PA | 1..195 | 1..194 | 687 | 67.2 | Plus |
Rab9Db-PA | 197 | CG9807-PA | 1..197 | 1..194 | 577 | 60.9 | Plus |
Rab9E-PA | 197 | CG32673-PA | 1..197 | 1..194 | 573 | 60.4 | Plus |
Rab9Fa-PA | 197 | CG32671-PA | 1..197 | 1..194 | 571 | 59.9 | Plus |