Clone Sequence Records
BS14586.complete Sequence
830 bp assembled on 2010-02-09
GenBank Submission: KX803470
> BS14586.complete
GAAGTTATCAGTCGACATGAGTACAGTCGCAAGCAACGATCAGCACGTGG
ACACCGGCGTATTGCCGGTGCCCAGCACGAACAGCCCTAGCTCCCAGATC
GAGCAGAAGGGCAATGAAGCAATCGTGCCCAACTACAAGGCTGCTACTGC
CGGCGAGCAGGGCGAGGCACAGGCTGGAGCTACCTGCACTACAGTCGCTG
TTCGTCCGTCAGGTGTTGCCACCTCTGCCGACATAGTGAAAGGGTCATCA
TCTGTGAGCAGCCACGTGCAGCCGTCATGGCGGAGCTCCTTCGCCAGGTC
CCAGGACAAGAAGTGCGGCATTTGCTTCGAGACGATCATGGAGAAGGAGG
GAGGAGATAAGCGTTTCGGCATCCTGCCCAGCTGCAACCACGTGTTCTGC
TTCCAGTGCATTTGCACATGGCGTCATGCCACACAGTATGCCTATCAAGT
GACGCGAGCTTGCCCCGAATGTCGCGTGTGGTCTAACTTTGTATGTCCCA
GTGCATTTTGGGTGGAGGAAAAGGTGGCGAAGGACCAGCTCATCAATGAT
CACCTCGCCGCTATGCGTGCAAGGGACTGCAAGTACTTTAAACAAGGACA
AGGCGTGTGCCTCTTTGGCAACAAGTGTTTTTACAAGCACTCTATACCCA
ACGCAGATTACGTCGATGTGGGATTGCCGACCCATGCTCTAGGGCTACCG
ATTCCATCAGATTTTTCGGGACTTGGCAATTGTCTTATTTTGGTTCCTTT
CCCGAATATGTTTTTTGATGATTTCAGCAATTCCGACGACTACGATTTCT
CGGACGTAAACTAGAAGCTTTCTAGACCAT
BS14586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-RA | 798 | CG12477-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
| Mkrn1-RC | 1161 | CG7184-PC | 619..1006 | 293..680 | 860 | 81.4 | Plus |
| Mkrn1-RB | 1161 | CG7184-PB | 619..1006 | 293..680 | 860 | 81.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-RA | 1325 | CG12477-RA | 91..888 | 17..814 | 3990 | 100 | Plus |
| Mkrn1-RC | 2229 | CG7184-RC | 824..1211 | 293..680 | 860 | 81.4 | Plus |
| Mkrn1-RB | 2163 | CG7184-RB | 758..1145 | 293..680 | 860 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18722330..18723127 | 814..17 | 3990 | 100 | Minus |
| 3L | 28110227 | 3L | 21531808..21532032 | 680..456 | 495 | 81.3 | Minus |
| 3L | 28110227 | 3L | 21532358..21532502 | 437..293 | 395 | 84.8 | Minus |
| X | 23542271 | X | 14777334..14777576 | 293..535 | 270 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:24:52 has no hits.
BS14586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:26 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:08 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:51 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..888 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:15 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:13 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..888 | 17..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:13 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18722330..18723127 | 17..814 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:51 Download gff for
BS14586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18715430..18716227 | 17..814 | 100 | | Minus |
BS14586.3prime Sequence
828 bp (828 high quality bases) assembled on 2006-10-13
> BS14586.3prime
ATGGTCTAGAAAGCTTCTAGTTTACGTCCGAGAAATCGTAGTCGTCGGAA
TTGCTGAAATCATCAAAAAACATATTCGGGAAAGGAACCAAAATAAGACA
ATTGCCAAGTCCCGAAAAATCTGATGGAATCGGTAGCCCTAGAGCATGGG
TCGGCAATCCCACATCGACGTAATCTGCGTTGGGTATAGAGTGCTTGTAA
AAACACTTGTTGCCAAAGAGGCACACGCCTTGTCCTTGTTTAAAGTACTT
GCAGTCCCTTGCACGCATAGCGGCGAGGTGATCATTGATGAGCTGGTCCT
TCGCCACCTTTTCCTCCACCCAAAATGCACTGGGACATACAAAGTTAGAC
CACACGCGACATTCGGGGCAAGCTCGCGTCACTTGATAGGCATACTGTGT
GGCATGACGCCATGTGCAAATGCACTGGAAGCAGAACACGTGGTTGCAGC
TGGGCAGGATGCCGAAACGCTTATCTCCTCCCTCCTTCTCCATGATCGTC
TCGAAGCAAATGCCGCACTTCTTGTCCTGGGACCTGGCGAAGGAGCTCCG
CCATGACGGCTGCACGTGGCTGCTCACAGATGATGACCCTTTCACTATGT
CGGCAGAGGTGGCAACACCTGACGGACGAACAGCGACTGTAGTGCAGGTA
GCTCCAGCCTGTGCCTCGCCCTGCTCGCCGGCAGTAGCAGCCTTGTAGTT
GGGCACGATTGCTTCATTGCCCTTCTGCTCGATCTGGGAGCTAGGGCTGT
TCGTGCTGGGCACCGGCAATACGCCGGTGTCCACGTGCTGATCGTTGCTT
GCGACTGTACTCATGTCGACTGATAACT
BS14586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-PA | 798 | CG12477-RA | 1..798 | 814..17 | 3990 | 100 | Minus |
| CG7184-PA | 1161 | Mkrn1-RA | 629..763 | 528..394 | 175 | 85.1 | Minus |
| CG7184-PB | 1161 | Mkrn1-RB | 629..763 | 528..394 | 175 | 85.1 | Minus |
| CG7184-PA | 1161 | Mkrn1-RA | 778..806 | 379..351 | 145 | 100 | Minus |
| CG7184-PB | 1161 | Mkrn1-RB | 778..806 | 379..351 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-RA | 1325 | CG12477-RA | 91..888 | 814..17 | 3990 | 100 | Minus |
| Mkrn1-RC | 2229 | CG7184-RC | 824..1211 | 538..151 | 860 | 81.4 | Minus |
| Mkrn1-RB | 2163 | CG7184-RB | 758..1145 | 538..151 | 860 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18722330..18723127 | 17..814 | 3990 | 100 | Plus |
| 3L | 28110227 | 3L | 21531808..21532032 | 151..375 | 495 | 81.3 | Plus |
| 3L | 28110227 | 3L | 21532358..21532502 | 394..538 | 395 | 84.8 | Plus |
| X | 23542271 | X | 14777334..14777576 | 538..296 | 270 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:00:50 has no hits.
BS14586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:04 Download gff for
BS14586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-PA | 1..798 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:00 Download gff for
BS14586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..891 | 12..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:36 Download gff for
BS14586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..891 | 12..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:36 Download gff for
BS14586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18722327..18723127 | 12..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:00 Download gff for
BS14586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18715427..18716227 | 12..814 | 99 | | Plus |
BS14586.5prime Sequence
828 bp (793 high quality bases) assembled on 2006-10-13
> BS14586.5prime
GAAGTTATCAGTCGACATGAGTACAGTCGCAAGCAACGATCAGCACGTGG
ACACCGGCGTATTGCCGGTGCCCAGCACGAACAGCCCTAGCTCCCAGATC
GAGCAGAAGGGCAATGAAGCAATCGTGCCCAACTACAAGGCTGCTACTGC
CGGCGAGCAGGGCGAGGCACAGGCTGGAGCTACCTGCACTACAGTCGCTG
TTCGTCCGTCAGGTGTTGCCACCTCTGCCGACATAGTGAAAGGGTCATCA
TCTGTGAGCAGCCACGTGCAGCCGTCATGGCGGAGCTCCTTCGCCAGGTC
CCAGGACAAGAAGTGCGGCATTTGCTTCGAGACGATCATGGAGAAGGAGG
GAGGAGATAAGCGTTTCGGCATCCTGCCCAGCTGCAACCACGTGTTCTGC
TTCCAGTGCATTTGCACATGGCGTCATGCCACACAGTATGCCTATCAAGT
GACGCGAGCTTGCCCCGAATGTCGCGTGTGGTCTAACTTTGTATGTCCCA
GTGCATTTTGGGTGGAGGAAAAGGTGGCGAAGGACCAGCTCATCAATGAT
CACCTCGCCGCTATGCGTGCAAGGGACTGCAAGTACTTTAAACAAGGACA
AGGCGTGTGCCTCTTTGGCAACAAGTGTTTTTACAAGCACTCTATACCCA
ACGCAGATTACGTCGATGTGGGATTGCCGACCCATGCTCTAGGGCTACCG
ATTCCATCAGATTTTTCGGGACTTGGCAATTGTCTTATTTTGGTTCCTTT
CCCGAATATGTTTTTTGATGATTTCAGCAATTCCGACGACTACGATTTCT
CGGACGTAAACTAGAAGCTTTCTAGACC
BS14586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-PA | 798 | CG12477-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
| CG7184-PA | 1161 | Mkrn1-RA | 629..763 | 303..437 | 175 | 85.1 | Plus |
| CG7184-PB | 1161 | Mkrn1-RB | 629..763 | 303..437 | 175 | 85.1 | Plus |
| CG7184-PA | 1161 | Mkrn1-RA | 778..806 | 452..480 | 145 | 100 | Plus |
| CG7184-PB | 1161 | Mkrn1-RB | 778..806 | 452..480 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-RA | 1325 | CG12477-RA | 91..888 | 17..814 | 3990 | 100 | Plus |
| Mkrn1-RC | 2229 | CG7184-RC | 824..1211 | 293..680 | 860 | 81.4 | Plus |
| Mkrn1-RB | 2163 | CG7184-RB | 758..1145 | 293..680 | 860 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18722330..18723127 | 814..17 | 3990 | 100 | Minus |
| 3L | 28110227 | 3L | 21531808..21532032 | 680..456 | 495 | 81.3 | Minus |
| 3L | 28110227 | 3L | 21532358..21532502 | 437..293 | 395 | 84.8 | Minus |
| X | 23542271 | X | 14777334..14777576 | 293..535 | 270 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:01:06 has no hits.
BS14586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:04 Download gff for
BS14586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:02 Download gff for
BS14586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..891 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:53 Download gff for
BS14586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..891 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:53 Download gff for
BS14586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18722327..18723127 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:02 Download gff for
BS14586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18715427..18716227 | 17..819 | 99 | | Minus |
BS14586.pep Sequence
Translation from 16 to 813
> BS14586.pep
MSTVASNDQHVDTGVLPVPSTNSPSSQIEQKGNEAIVPNYKAATAGEQGE
AQAGATCTTVAVRPSGVATSADIVKGSSSVSSHVQPSWRSSFARSQDKKC
GICFETIMEKEGGDKRFGILPSCNHVFCFQCICTWRHATQYAYQVTRACP
ECRVWSNFVCPSAFWVEEKVAKDQLINDHLAAMRARDCKYFKQGQGVCLF
GNKCFYKHSIPNADYVDVGLPTHALGLPIPSDFSGLGNCLILVPFPNMFF
DDFSNSDDYDFSDVN*
BS14586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-PA | 265 | CG12477-PA | 1..265 | 1..265 | 1442 | 100 | Plus |
| Mkrn1-PC | 386 | CG7184-PC | 205..384 | 91..263 | 544 | 54.4 | Plus |
| Mkrn1-PB | 386 | CG7184-PB | 205..384 | 91..263 | 544 | 54.4 | Plus |
| Mkrn1-PA | 386 | CG7184-PA | 205..384 | 91..263 | 544 | 54.4 | Plus |
| CG5347-PA | 285 | CG5347-PA | 55..268 | 18..208 | 438 | 43.9 | Plus |
