Clone BS14587 Report

Search the DGRC for BS14587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptlft-RA
Protein status:BS14587.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14587.3prime Sequence

837 bp (737 high quality bases) assembled on 2006-10-13

> BS14587.3prime
ATGGTCTAGAAAGCTTTTAATCATCAATGGTAGCCGAGTTAAGGGCACTG
CCGCCCAGCTGATTATGTGCTATCATAAGGATATCCTTCTTCTCCTTCGG
AAAGCGCAATTCACGCCCAGCCATGCGAAAGGTCTCCAGCTCCCTCTCGG
CGAGCACCAACTCCCTGCGAATAACGCCTGGATTATCGTGCTCCCTGGCA
ATCCAATCCAATGCCATCTGCGATCGCATCTCGTCGTCCAGGCTCCGGTT
CGAATAATGAGCCACCACTTCCTGCCTGGAGCAGTGGCGTTCGCGCATTG
CTTTCAGCGATCCGTTCCAGTGAAGCAGTTGGAACACGGTCATAAGCTCC
TGGAACTCCAGCATGGTTCTTCCCTTGTTCGCCTCCAGCATGAATCTGAA
TGCTCCGATGCCCGATTCTGTGCCCTCGTTGATTTGCGATGTGCCCTTGA
AGGAAGTGCGAGCATCCTGAACCGCCTTTTGAATGAACTCATCGCTGATT
CGACGCGATGGATGCTCATTAAAGACGGAATTCATTAGGGCGATCTTGGC
CGAACTGCGACGAGCCTCTGCCTTGGTGGGACAGTTTTGAAAACTTCCAA
AGCAGCTTCCTCCAGGAAGTGTTACGAAGCAAATGTATGGCTGGCTATTA
GACGGAATCGATTCGTAAATCACAAGAGCTCCATTTTTCAATTCAGCTCC
ACGAGACTGCTTCATTTGCCAAAACTCTTGTAGGGCTTCAACGACATTTA
CTCTATAATCTCTATCCTCGTAAAATCCAGTTACGGTTGGTAAAACCCAA
AAAGGTTCTTCGGGATAGACCATGTCGACTGATAACT

BS14587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13139-PA 807 CG13139-RA 1..807 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 1281 CG13139-RB 214..1020 823..17 4035 100 Minus
lft-RA 1266 CG13139-RA 199..1005 823..17 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366149 397..17 1905 100 Minus
2L 23513712 2L 10365490..10365680 586..396 955 100 Minus
2L 23513712 2L 10365263..10365428 752..587 830 100 Minus
2L 23513712 2L 10365118..10365190 823..751 365 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:27:01 has no hits.

BS14587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:04 Download gff for BS14587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13139-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:46 Download gff for BS14587.3prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1005 17..823 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:31 Download gff for BS14587.3prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1005 17..823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:31 Download gff for BS14587.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10365118..10365190 751..823 100 -> Minus
2L 10365265..10365428 587..750 100 -> Minus
2L 10365490..10365680 396..586 100 -> Minus
2L 10365771..10366149 17..395 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:46 Download gff for BS14587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10365118..10365190 751..823 100 -> Minus
arm_2L 10365265..10365428 587..750 100 -> Minus
arm_2L 10365490..10365680 396..586 100 -> Minus
arm_2L 10365771..10366149 17..395 100   Minus

BS14587.5prime Sequence

837 bp (819 high quality bases) assembled on 2006-10-13

> BS14587.5prime
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATTAAAAGCTTTCTAGACC

BS14587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13139-PA 807 CG13139-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 1281 CG13139-RB 214..1020 17..823 4035 100 Plus
lft-RA 1266 CG13139-RA 199..1005 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366149 443..823 1905 100 Plus
2L 23513712 2L 10365490..10365680 254..444 955 100 Plus
2L 23513712 2L 10365263..10365428 88..253 830 100 Plus
2L 23513712 2L 10365118..10365190 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:13:11 has no hits.

BS14587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:05 Download gff for BS14587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13139-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:11 Download gff for BS14587.5prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1005 17..823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:30 Download gff for BS14587.5prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1005 17..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:30 Download gff for BS14587.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10365490..10365680 254..444 100 -> Plus
2L 10365118..10365190 17..89 100 -> Plus
2L 10365265..10365428 90..253 100 -> Plus
2L 10365771..10366149 445..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:11 Download gff for BS14587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10365118..10365190 17..89 100 -> Plus
arm_2L 10365265..10365428 90..253 100 -> Plus
arm_2L 10365490..10365680 254..444 100 -> Plus
arm_2L 10365771..10366149 445..823 100   Plus

BS14587.complete Sequence

839 bp assembled on 2006-11-01

GenBank Submission: FJ637715

> BS14587.complete
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATTAAAAGCTTTCTAGACCAT

BS14587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 807 CG13139-PB 1..807 17..823 4035 100 Plus
lft-RA 807 CG13139-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 1281 CG13139-RB 214..1020 17..823 4035 100 Plus
lft-RA 1266 CG13139-RA 199..1005 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366149 443..823 1905 100 Plus
2L 23513712 2L 10365490..10365680 254..444 955 100 Plus
2L 23513712 2L 10365263..10365428 88..253 830 100 Plus
2L 23513712 2L 10365118..10365190 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:18:32 has no hits.

BS14587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:07 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:32 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:49 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1003 17..821 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:07 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:32 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1003 17..821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:32 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10365118..10365190 17..89 100 -> Plus
2L 10365265..10365428 90..253 100 -> Plus
2L 10365490..10365680 254..444 100 -> Plus
2L 10365771..10366147 445..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:49 Download gff for BS14587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10365118..10365190 17..89 100 -> Plus
arm_2L 10365265..10365428 90..253 100 -> Plus
arm_2L 10365490..10365680 254..444 100 -> Plus
arm_2L 10365771..10366147 445..821 100   Plus

BS14587.pep Sequence

Translation from 16 to 822

> BS14587.pep
MVYPEEPFWVLPTVTGFYEDRDYRVNVVEALQEFWQMKQSRGAELKNGAL
VIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTKAEARRSSAKIALMNSV
FNEHPSRRISDEFIQKAVQDARTSFKGTSQINEGTESGIGAFRFMLEANK
GRTMLEFQELMTVFQLLHWNGSLKAMRERHCSRQEVVAHYSNRSLDDEMR
SQMALDWIAREHDNPGVIRRELVLAERELETFRMAGRELRFPKEKKDILM
IAHNQLGGSALNSATIDD*

BS14587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
lft-PB 268 CG13139-PB 1..268 1..268 1395 100 Plus
lft-PA 268 CG13139-PA 1..268 1..268 1395 100 Plus