Clone Sequence Records
BS14587.3prime Sequence
837 bp (737 high quality bases) assembled on 2006-10-13
> BS14587.3prime
ATGGTCTAGAAAGCTTTTAATCATCAATGGTAGCCGAGTTAAGGGCACTG
CCGCCCAGCTGATTATGTGCTATCATAAGGATATCCTTCTTCTCCTTCGG
AAAGCGCAATTCACGCCCAGCCATGCGAAAGGTCTCCAGCTCCCTCTCGG
CGAGCACCAACTCCCTGCGAATAACGCCTGGATTATCGTGCTCCCTGGCA
ATCCAATCCAATGCCATCTGCGATCGCATCTCGTCGTCCAGGCTCCGGTT
CGAATAATGAGCCACCACTTCCTGCCTGGAGCAGTGGCGTTCGCGCATTG
CTTTCAGCGATCCGTTCCAGTGAAGCAGTTGGAACACGGTCATAAGCTCC
TGGAACTCCAGCATGGTTCTTCCCTTGTTCGCCTCCAGCATGAATCTGAA
TGCTCCGATGCCCGATTCTGTGCCCTCGTTGATTTGCGATGTGCCCTTGA
AGGAAGTGCGAGCATCCTGAACCGCCTTTTGAATGAACTCATCGCTGATT
CGACGCGATGGATGCTCATTAAAGACGGAATTCATTAGGGCGATCTTGGC
CGAACTGCGACGAGCCTCTGCCTTGGTGGGACAGTTTTGAAAACTTCCAA
AGCAGCTTCCTCCAGGAAGTGTTACGAAGCAAATGTATGGCTGGCTATTA
GACGGAATCGATTCGTAAATCACAAGAGCTCCATTTTTCAATTCAGCTCC
ACGAGACTGCTTCATTTGCCAAAACTCTTGTAGGGCTTCAACGACATTTA
CTCTATAATCTCTATCCTCGTAAAATCCAGTTACGGTTGGTAAAACCCAA
AAAGGTTCTTCGGGATAGACCATGTCGACTGATAACT
BS14587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13139-PA | 807 | CG13139-RA | 1..807 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 1281 | CG13139-RB | 214..1020 | 823..17 | 4035 | 100 | Minus |
lft-RA | 1266 | CG13139-RA | 199..1005 | 823..17 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10365769..10366149 | 397..17 | 1905 | 100 | Minus |
2L | 23513712 | 2L | 10365490..10365680 | 586..396 | 955 | 100 | Minus |
2L | 23513712 | 2L | 10365263..10365428 | 752..587 | 830 | 100 | Minus |
2L | 23513712 | 2L | 10365118..10365190 | 823..751 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:27:01 has no hits.
BS14587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:04 Download gff for
BS14587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:46 Download gff for
BS14587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1005 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:31 Download gff for
BS14587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1005 | 17..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:31 Download gff for
BS14587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10365118..10365190 | 751..823 | 100 | -> | Minus |
2L | 10365265..10365428 | 587..750 | 100 | -> | Minus |
2L | 10365490..10365680 | 396..586 | 100 | -> | Minus |
2L | 10365771..10366149 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:46 Download gff for
BS14587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10365118..10365190 | 751..823 | 100 | -> | Minus |
arm_2L | 10365265..10365428 | 587..750 | 100 | -> | Minus |
arm_2L | 10365490..10365680 | 396..586 | 100 | -> | Minus |
arm_2L | 10365771..10366149 | 17..395 | 100 | | Minus |
BS14587.5prime Sequence
837 bp (819 high quality bases) assembled on 2006-10-13
> BS14587.5prime
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATTAAAAGCTTTCTAGACC
BS14587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13139-PA | 807 | CG13139-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 1281 | CG13139-RB | 214..1020 | 17..823 | 4035 | 100 | Plus |
lft-RA | 1266 | CG13139-RA | 199..1005 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10365769..10366149 | 443..823 | 1905 | 100 | Plus |
2L | 23513712 | 2L | 10365490..10365680 | 254..444 | 955 | 100 | Plus |
2L | 23513712 | 2L | 10365263..10365428 | 88..253 | 830 | 100 | Plus |
2L | 23513712 | 2L | 10365118..10365190 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:13:11 has no hits.
BS14587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:05 Download gff for
BS14587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:11 Download gff for
BS14587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1005 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:30 Download gff for
BS14587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1005 | 17..823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:30 Download gff for
BS14587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
2L | 10365771..10366149 | 445..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:11 Download gff for
BS14587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
arm_2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
arm_2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
arm_2L | 10365771..10366149 | 445..823 | 100 | | Plus |
BS14587.complete Sequence
839 bp assembled on 2006-11-01
GenBank Submission: FJ637715
> BS14587.complete
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATTAAAAGCTTTCTAGACCAT
BS14587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 807 | CG13139-PB | 1..807 | 17..823 | 4035 | 100 | Plus |
lft-RA | 807 | CG13139-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 1281 | CG13139-RB | 214..1020 | 17..823 | 4035 | 100 | Plus |
lft-RA | 1266 | CG13139-RA | 199..1005 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10365769..10366149 | 443..823 | 1905 | 100 | Plus |
2L | 23513712 | 2L | 10365490..10365680 | 254..444 | 955 | 100 | Plus |
2L | 23513712 | 2L | 10365263..10365428 | 88..253 | 830 | 100 | Plus |
2L | 23513712 | 2L | 10365118..10365190 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:18:32 has no hits.
BS14587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:07 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:32 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:49 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1003 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:07 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:32 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1003 | 17..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:32 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
2L | 10365771..10366147 | 445..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:49 Download gff for
BS14587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
arm_2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
arm_2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
arm_2L | 10365771..10366147 | 445..821 | 100 | | Plus |
BS14587.pep Sequence
Translation from 16 to 822
> BS14587.pep
MVYPEEPFWVLPTVTGFYEDRDYRVNVVEALQEFWQMKQSRGAELKNGAL
VIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTKAEARRSSAKIALMNSV
FNEHPSRRISDEFIQKAVQDARTSFKGTSQINEGTESGIGAFRFMLEANK
GRTMLEFQELMTVFQLLHWNGSLKAMRERHCSRQEVVAHYSNRSLDDEMR
SQMALDWIAREHDNPGVIRRELVLAERELETFRMAGRELRFPKEKKDILM
IAHNQLGGSALNSATIDD*
BS14587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-PB | 268 | CG13139-PB | 1..268 | 1..268 | 1395 | 100 | Plus |
lft-PA | 268 | CG13139-PA | 1..268 | 1..268 | 1395 | 100 | Plus |