Clone BS14588 Report

Search the DGRC for BS14588

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG14259-RA
Protein status:BS14588.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14588.3prime Sequence

749 bp (737 high quality bases) assembled on 2006-10-13

> BS14588.3prime
ATGGTCTAGAAAGCTTCTATTCTTTTTTGCCAAGTATCTCCTTTGGACCA
TAAAGTTGCTGGGGCGTTGGTATGTCCTCAACGAAAAAGTTGGCTGGTAT
TAAATGAAAAACCGTAGACATTACATCATAAAGGATATTTTCCACCGTCT
CAACGATGAGTGGTTTCAGGGCCTCGTAGAAATCCCGCCAGTTTTCATTG
AAAAACTCATTCGTACTGCGCTCCACCTCCTTGCTACGTCCATTGAATAG
ATTGTCCAGATAAGTGCGCACTTTGGACAGATTCAGTTGAACCTGCACAG
CGGTCACGTTGTCGAAGGTGAAGCCACCCTTTTCATACAGACGTATTTTT
GTTAGTAGCAAAATGTCAAGATCATCAATCTCAATAAATATTTTGCCAGA
GCCACTCAGTGGTATAAGGAGTATTCGTCCAGCCATTTCATACCTTCCAT
CCAGTCTCATTTTCGGAAGATATATTTTGGTCTGCCAGCTAAAGTCTTTC
TTGCTCACACGACTCTCCTTGACCTTTGTGTTGGCAAAACCCTTGACCAC
CAGGTCAGTCAGATTGGCTCTGATGGTGGCCACCTCGTTGTTATCCTGCT
TGAAAACTATATCCCTAACTCTCATGGGATCAAAGGGACCGAACCGCTCG
AGCACCTCTGGTATTCCAATGTTCAACTGATCAAGAAGCTTCTGAATGCT
ATTCGTAGAGCACTTGGTGAAGCCCGGTTCGTAGATCCGACAAGATGGC

BS14588.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-PA 870 CG14259-RA 138..870 749..17 3665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 1072 CG14259-RA 258..990 749..17 3665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27095415..27095774 376..17 1800 100 Minus
3R 32079331 3R 27094849..27095088 749..510 1200 100 Minus
3R 32079331 3R 27095212..27095346 510..376 675 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:48:03 has no hits.

BS14588.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:05 Download gff for BS14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-PA 138..870 17..749 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:33 Download gff for BS14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 294..1026 17..749 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:32 Download gff for BS14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 258..990 17..749 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:32 Download gff for BS14588.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27094849..27095088 510..749 100 -> Minus
3R 27095213..27095346 376..509 100 -> Minus
3R 27095416..27095774 17..375 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:33 Download gff for BS14588.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22920571..22920810 510..749 100 -> Minus
arm_3R 22920935..22921068 376..509 100 -> Minus
arm_3R 22921138..22921496 17..375 100   Minus

BS14588.5prime Sequence

897 bp (805 high quality bases) assembled on 2006-10-13

> BS14588.5prime
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGTCCAAAGGAGATACTTGGCAAAAAAGAATAGAAGCTTTCTAG

BS14588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-PA 870 CG14259-RA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 1072 CG14259-RA 120..990 16..886 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27095415..27095774 527..886 1800 100 Plus
3R 32079331 3R 27094839..27095088 144..393 1250 100 Plus
3R 32079331 3R 27095212..27095346 393..527 675 100 Plus
3R 32079331 3R 27094652..27094779 16..143 640 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:02:06 has no hits.

BS14588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:05 Download gff for BS14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:09 Download gff for BS14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 156..1026 16..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:58 Download gff for BS14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 120..990 16..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:58 Download gff for BS14588.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27094652..27094779 16..143 100 -> Plus
3R 27094839..27095088 144..393 100 -> Plus
3R 27095213..27095346 394..527 100 -> Plus
3R 27095416..27095774 528..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:09 Download gff for BS14588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22920935..22921068 394..527 100 -> Plus
arm_3R 22920561..22920810 144..393 100 -> Plus
arm_3R 22920374..22920501 16..143 100 -> Plus
arm_3R 22921138..22921496 528..886 100   Plus

BS14588.complete Sequence

902 bp assembled on 2006-11-01

GenBank Submission: FJ637716

> BS14588.complete
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGTCCAAAGGAGATACTTGGCAAAAAAGAATAGAAGCTTTCTAGACC
AT

BS14588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 870 CG14259-PA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-RA 1072 CG14259-RA 120..990 16..886 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27095415..27095774 527..886 1800 100 Plus
3R 32079331 3R 27094839..27095088 144..393 1250 100 Plus
3R 32079331 3R 27095212..27095346 393..527 675 100 Plus
3R 32079331 3R 27094652..27094779 16..143 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:00:15 has no hits.

BS14588.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:17 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:23 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:42 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 157..1014 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:18 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:44 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG14259-RA 121..978 17..874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:44 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27094839..27095088 144..393 100 -> Plus
3R 27095213..27095346 394..527 100 -> Plus
3R 27094653..27094779 17..143 100 -> Plus
3R 27095416..27095762 528..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:42 Download gff for BS14588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22920935..22921068 394..527 100 -> Plus
arm_3R 22920375..22920501 17..143 100 -> Plus
arm_3R 22920561..22920810 144..393 100 -> Plus
arm_3R 22921138..22921484 528..874 100   Plus

BS14588.pep Sequence

Translation from 16 to 885

> BS14588.pep
MSSTRYGRTLLGIWSGLLAILCLNEIAMDRSLVSAVAYYSEKPAFLPSCR
IYEPGFTKCSTNSIQKLLDQLNIGIPEVLERFGPFDPMRVRDIVFKQDNN
EVATIRANLTDLVVKGFANTKVKESRVSKKDFSWQTKIYLPKMRLDGRYE
MAGRILLIPLSGSGKIFIEIDDLDILLLTKIRLYEKGGFTFDNVTAVQVQ
LNLSKVRTYLDNLFNGRSKEVERSTNEFFNENWRDFYEALKPLIVETVEN
ILYDVMSTVFHLIPANFFVEDIPTPQQLYGPKEILGKKE*

BS14588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14259-PA 289 CG14259-PA 1..289 1..289 1485 100 Plus
CG17189-PA 264 CG17189-PA 13..259 36..282 885 65.2 Plus
CG14457-PC 270 CG14457-PC 17..263 32..280 607 46.6 Plus
CG14457-PB 271 CG14457-PB 24..264 38..280 606 46.9 Plus
CG14457-PA 144 CG14457-PA 1..137 143..280 404 52.9 Plus