Clone Sequence Records
BS14588.3prime Sequence
749 bp (737 high quality bases) assembled on 2006-10-13
> BS14588.3prime
ATGGTCTAGAAAGCTTCTATTCTTTTTTGCCAAGTATCTCCTTTGGACCA
TAAAGTTGCTGGGGCGTTGGTATGTCCTCAACGAAAAAGTTGGCTGGTAT
TAAATGAAAAACCGTAGACATTACATCATAAAGGATATTTTCCACCGTCT
CAACGATGAGTGGTTTCAGGGCCTCGTAGAAATCCCGCCAGTTTTCATTG
AAAAACTCATTCGTACTGCGCTCCACCTCCTTGCTACGTCCATTGAATAG
ATTGTCCAGATAAGTGCGCACTTTGGACAGATTCAGTTGAACCTGCACAG
CGGTCACGTTGTCGAAGGTGAAGCCACCCTTTTCATACAGACGTATTTTT
GTTAGTAGCAAAATGTCAAGATCATCAATCTCAATAAATATTTTGCCAGA
GCCACTCAGTGGTATAAGGAGTATTCGTCCAGCCATTTCATACCTTCCAT
CCAGTCTCATTTTCGGAAGATATATTTTGGTCTGCCAGCTAAAGTCTTTC
TTGCTCACACGACTCTCCTTGACCTTTGTGTTGGCAAAACCCTTGACCAC
CAGGTCAGTCAGATTGGCTCTGATGGTGGCCACCTCGTTGTTATCCTGCT
TGAAAACTATATCCCTAACTCTCATGGGATCAAAGGGACCGAACCGCTCG
AGCACCTCTGGTATTCCAATGTTCAACTGATCAAGAAGCTTCTGAATGCT
ATTCGTAGAGCACTTGGTGAAGCCCGGTTCGTAGATCCGACAAGATGGC
BS14588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-PA | 870 | CG14259-RA | 138..870 | 749..17 | 3665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 1072 | CG14259-RA | 258..990 | 749..17 | 3665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27095415..27095774 | 376..17 | 1800 | 100 | Minus |
3R | 32079331 | 3R | 27094849..27095088 | 749..510 | 1200 | 100 | Minus |
3R | 32079331 | 3R | 27095212..27095346 | 510..376 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:48:03 has no hits.
BS14588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:05 Download gff for
BS14588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-PA | 138..870 | 17..749 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:33 Download gff for
BS14588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 294..1026 | 17..749 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:32 Download gff for
BS14588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 258..990 | 17..749 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:32 Download gff for
BS14588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27094849..27095088 | 510..749 | 100 | -> | Minus |
3R | 27095213..27095346 | 376..509 | 100 | -> | Minus |
3R | 27095416..27095774 | 17..375 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:33 Download gff for
BS14588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22920571..22920810 | 510..749 | 100 | -> | Minus |
arm_3R | 22920935..22921068 | 376..509 | 100 | -> | Minus |
arm_3R | 22921138..22921496 | 17..375 | 100 | | Minus |
BS14588.5prime Sequence
897 bp (805 high quality bases) assembled on 2006-10-13
> BS14588.5prime
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGTCCAAAGGAGATACTTGGCAAAAAAGAATAGAAGCTTTCTAG
BS14588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-PA | 870 | CG14259-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 1072 | CG14259-RA | 120..990 | 16..886 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27095415..27095774 | 527..886 | 1800 | 100 | Plus |
3R | 32079331 | 3R | 27094839..27095088 | 144..393 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 27095212..27095346 | 393..527 | 675 | 100 | Plus |
3R | 32079331 | 3R | 27094652..27094779 | 16..143 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:02:06 has no hits.
BS14588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:05 Download gff for
BS14588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:09 Download gff for
BS14588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 156..1026 | 16..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:58 Download gff for
BS14588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 120..990 | 16..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:58 Download gff for
BS14588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27094652..27094779 | 16..143 | 100 | -> | Plus |
3R | 27094839..27095088 | 144..393 | 100 | -> | Plus |
3R | 27095213..27095346 | 394..527 | 100 | -> | Plus |
3R | 27095416..27095774 | 528..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:09 Download gff for
BS14588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22920935..22921068 | 394..527 | 100 | -> | Plus |
arm_3R | 22920561..22920810 | 144..393 | 100 | -> | Plus |
arm_3R | 22920374..22920501 | 16..143 | 100 | -> | Plus |
arm_3R | 22921138..22921496 | 528..886 | 100 | | Plus |
BS14588.complete Sequence
902 bp assembled on 2006-11-01
GenBank Submission: FJ637716
> BS14588.complete
GAAGTTATCAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCG
GCATTTGGAGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATG
GATAGGTCGTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTT
TCTGCCATCTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGA
ATAGCATTCAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTG
CTCGAGCGGTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTT
CAAGCAGGATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACC
TGGTGGTCAAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGC
AAGAAAGACTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACT
GGATGGAAGGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTG
GCTCTGGCAAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTA
ACAAAAATACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGAC
CGCTGTGCAGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACA
ATCTATTCAATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTT
TTCAATGAAAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGT
TGAGACGGTGGAAAATATCCTTTATGATGTAATGTCTACGGTTTTTCATT
TAATACCAGCCAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTT
TATGGTCCAAAGGAGATACTTGGCAAAAAAGAATAGAAGCTTTCTAGACC
AT
BS14588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 870 | CG14259-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-RA | 1072 | CG14259-RA | 120..990 | 16..886 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27095415..27095774 | 527..886 | 1800 | 100 | Plus |
3R | 32079331 | 3R | 27094839..27095088 | 144..393 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 27095212..27095346 | 393..527 | 675 | 100 | Plus |
3R | 32079331 | 3R | 27094652..27094779 | 16..143 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:00:15 has no hits.
BS14588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:17 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:23 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:42 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 157..1014 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:18 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:44 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14259-RA | 121..978 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:44 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27094839..27095088 | 144..393 | 100 | -> | Plus |
3R | 27095213..27095346 | 394..527 | 100 | -> | Plus |
3R | 27094653..27094779 | 17..143 | 100 | -> | Plus |
3R | 27095416..27095762 | 528..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:42 Download gff for
BS14588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22920935..22921068 | 394..527 | 100 | -> | Plus |
arm_3R | 22920375..22920501 | 17..143 | 100 | -> | Plus |
arm_3R | 22920561..22920810 | 144..393 | 100 | -> | Plus |
arm_3R | 22921138..22921484 | 528..874 | 100 | | Plus |
BS14588.pep Sequence
Translation from 16 to 885
> BS14588.pep
MSSTRYGRTLLGIWSGLLAILCLNEIAMDRSLVSAVAYYSEKPAFLPSCR
IYEPGFTKCSTNSIQKLLDQLNIGIPEVLERFGPFDPMRVRDIVFKQDNN
EVATIRANLTDLVVKGFANTKVKESRVSKKDFSWQTKIYLPKMRLDGRYE
MAGRILLIPLSGSGKIFIEIDDLDILLLTKIRLYEKGGFTFDNVTAVQVQ
LNLSKVRTYLDNLFNGRSKEVERSTNEFFNENWRDFYEALKPLIVETVEN
ILYDVMSTVFHLIPANFFVEDIPTPQQLYGPKEILGKKE*
BS14588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14259-PA | 289 | CG14259-PA | 1..289 | 1..289 | 1485 | 100 | Plus |
CG17189-PA | 264 | CG17189-PA | 13..259 | 36..282 | 885 | 65.2 | Plus |
CG14457-PC | 270 | CG14457-PC | 17..263 | 32..280 | 607 | 46.6 | Plus |
CG14457-PB | 271 | CG14457-PB | 24..264 | 38..280 | 606 | 46.9 | Plus |
CG14457-PA | 144 | CG14457-PA | 1..137 | 143..280 | 404 | 52.9 | Plus |