Clone BS14589 Report

Search the DGRC for BS14589

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG12914-RA
Protein status:BS14589.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14589.3prime Sequence

796 bp (673 high quality bases) assembled on 2006-10-13

> BS14589.3prime
ATGGTCTAGAAAGCTTTCATTCGATGTTCTTCCGATAGAACAGGTACACG
AATATATCATGAATGTCCGCGCGCCATCCCATCAATTCTATAAACGAGGC
TGTCGTCCACACATAGCCCATATATAGGGCAAAAAAGTTGAGGTAGTACA
GCTGGCCGATCAGTATGTAGTCCCCGGTCGACTCCTGGCGGTAGAAGTTC
GGCTTTCGCATGGAAGCGCCAAAGACTATGACAAACACGCTCGAGAGAAT
GGTGTATACTAGCAGGGTTGGAAACTCTATGATAACACGCTTCATCTCGG
CACACACGATGATGCCAAAGCAGGTGAGGACAAATATGCGCTCGCTCCAC
AGGATAACCTTATGCCGGGTAGTGAAAAGGCCTTTCTTGTGTTTGATGGC
ACTATTTCCGTATATCACACTGATGATCATCATAAGGAATGTTAGGAAGA
TTGACAGGATGAGGCTTATATAAGGGGCACGTTTGGCGGGCTTCATGATC
GACATGGTGTTCACCTCGTACGTCCAGAGGCCCGCCAATAACCGCACCCA
CATAGGCTTTTTAACGATTATGTGGTAGAAAAATCCGTAGAGCTGGATGG
ATAGGAAGCTGACGACAAATTGCACGAGACTGAGGTAGTAGCGATCTGCG
AGAAATTCCTTCAGGGGAGTGATCTCCATCGCCACCGAGACCTGAATCTG
TCCGATGACGAGCATAATTATGGTTACTCTGTACGTGGGTCCCCCCAACT
CTTTTGGCGCGGTGGGGGGTTTTCGCGCAACATGTCGACTGATAAC

BS14589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-PA 768 CG12914-RA 42..768 743..17 3635 100 Minus
CG12914-PA 768 CG12914-RA 1..40 783..744 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 1253 CG12914-RA 242..1009 783..17 3815 99.9 Minus
CG12914-RB 1238 CG12914-RB 242..994 783..17 3580 97.9 Minus
CG12914-RC 1251 CG12914-RC 217..1007 783..17 3575 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10248941..10249160 236..17 1100 100 Minus
2R 25286936 2R 10248312..10248462 671..521 755 100 Minus
2R 25286936 2R 10248524..10248671 521..374 740 100 Minus
2R 25286936 2R 10248721..10248858 373..236 690 100 Minus
2R 25286936 2R 10248132..10248244 783..672 515 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 17:48:09 has no hits.

BS14589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:06 Download gff for BS14589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-PA 1..768 17..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:36 Download gff for BS14589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1009 17..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:00 Download gff for BS14589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1009 17..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:00 Download gff for BS14589.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10248123..10248244 672..792 95 -> Minus
2R 10248312..10248462 521..671 100 -> Minus
2R 10248525..10248671 374..520 100 -> Minus
2R 10248721..10248858 236..373 100 -> Minus
2R 10248942..10249160 17..235 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:36 Download gff for BS14589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6135628..6135749 672..792 95 -> Minus
arm_2R 6135817..6135967 521..671 100 -> Minus
arm_2R 6136030..6136176 374..520 100 -> Minus
arm_2R 6136226..6136363 236..373 100 -> Minus
arm_2R 6136447..6136665 17..235 100   Minus

BS14589.5prime Sequence

799 bp (754 high quality bases) assembled on 2006-10-13

> BS14589.5prime
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAATGAAAGCTTTTCTAGACC

BS14589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-PA 768 CG12914-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 1253 CG12914-RA 242..1009 17..784 3840 100 Plus
CG12914-RB 1238 CG12914-RB 242..994 17..784 3605 98 Plus
CG12914-RC 1251 CG12914-RC 217..1007 17..784 3600 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10248941..10249160 565..784 1100 100 Plus
2R 25286936 2R 10248312..10248462 130..280 755 100 Plus
2R 25286936 2R 10248524..10248671 280..427 740 100 Plus
2R 25286936 2R 10248721..10248858 428..565 690 100 Plus
2R 25286936 2R 10248132..10248244 17..129 565 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:20:46 has no hits.

BS14589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:06 Download gff for BS14589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:56 Download gff for BS14589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1009 8..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:07 Download gff for BS14589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1009 8..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:07 Download gff for BS14589.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10248942..10249160 566..784 100   Plus
2R 10248123..10248244 8..129 96 -> Plus
2R 10248312..10248462 130..280 100 -> Plus
2R 10248525..10248671 281..427 100 -> Plus
2R 10248721..10248858 428..565 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:56 Download gff for BS14589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6135628..6135749 8..129 96 -> Plus
arm_2R 6135817..6135967 130..280 100 -> Plus
arm_2R 6136030..6136176 281..427 100 -> Plus
arm_2R 6136226..6136363 428..565 100 -> Plus
arm_2R 6136447..6136665 566..784 100   Plus

BS14589.complete Sequence

800 bp assembled on 2006-11-01

GenBank Submission: FJ637717

> BS14589.complete
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAATGAAAGCTTTCTAGACCAT

BS14589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 768 CG12914-PA 1..768 17..784 3840 100 Plus
CG12914-RB 753 CG12914-PB 1..753 17..784 3580 98 Plus
CG12914-RC 582 CG12914-PC 1..550 17..566 2750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 1253 CG12914-RA 242..1009 17..784 3840 100 Plus
CG12914-RB 1238 CG12914-RB 242..994 17..784 3580 98 Plus
CG12914-RC 1251 CG12914-RC 217..766 17..566 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10248941..10249160 565..784 1100 100 Plus
2R 25286936 2R 10248312..10248462 130..280 755 100 Plus
2R 25286936 2R 10248524..10248671 280..427 740 100 Plus
2R 25286936 2R 10248721..10248858 428..565 690 100 Plus
2R 25286936 2R 10248132..10248244 17..129 565 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:37:15 has no hits.

BS14589.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:09 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:15 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1009 8..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:53 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 247..1008 22..783 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:09 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1009 8..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:24 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 247..1008 22..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:24 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10248721..10248858 428..565 100 -> Plus
2R 10248942..10249159 566..783 100   Plus
2R 10248137..10248244 22..129 100 -> Plus
2R 10248312..10248462 130..280 100 -> Plus
2R 10248525..10248671 281..427 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:53 Download gff for BS14589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6136226..6136363 428..565 100 -> Plus
arm_2R 6136447..6136664 566..783 100   Plus
arm_2R 6135642..6135749 22..129 100 -> Plus
arm_2R 6135817..6135967 130..280 100 -> Plus
arm_2R 6136030..6136176 281..427 100 -> Plus

BS14589.pep Sequence

Translation from 16 to 783

> BS14589.pep
MLRENPPPRQKSWVGPTYRVTIIMLVIGQIQVSVAMEITPLKEFLADRYY
LSLVQFVVSFLSIQLYGFFYHIIVKKPMWVRLLAGLWTYEVNTMSIMKPA
KRAPYISLILSIFLTFLMMIISVIYGNSAIKHKKGLFTTRHKVILWSERI
FVLTCFGIIVCAEMKRVIIEFPTLLVYTILSSVFVIVFGASMRKPNFYRQ
ESTGDYILIGQLYYLNFFALYMGYVWTTASFIELMGWRADIHDIFVYLFY
RKNIE*

BS14589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-PA 255 CG12914-PA 1..255 1..255 1320 100 Plus
CG12914-PB 250 CG12914-PB 1..250 1..255 1276 98 Plus
CG12914-PC 193 CG12914-PC 1..192 1..192 938 96.4 Plus