Clone Sequence Records
BS14589.3prime Sequence
796 bp (673 high quality bases) assembled on 2006-10-13
> BS14589.3prime
ATGGTCTAGAAAGCTTTCATTCGATGTTCTTCCGATAGAACAGGTACACG
AATATATCATGAATGTCCGCGCGCCATCCCATCAATTCTATAAACGAGGC
TGTCGTCCACACATAGCCCATATATAGGGCAAAAAAGTTGAGGTAGTACA
GCTGGCCGATCAGTATGTAGTCCCCGGTCGACTCCTGGCGGTAGAAGTTC
GGCTTTCGCATGGAAGCGCCAAAGACTATGACAAACACGCTCGAGAGAAT
GGTGTATACTAGCAGGGTTGGAAACTCTATGATAACACGCTTCATCTCGG
CACACACGATGATGCCAAAGCAGGTGAGGACAAATATGCGCTCGCTCCAC
AGGATAACCTTATGCCGGGTAGTGAAAAGGCCTTTCTTGTGTTTGATGGC
ACTATTTCCGTATATCACACTGATGATCATCATAAGGAATGTTAGGAAGA
TTGACAGGATGAGGCTTATATAAGGGGCACGTTTGGCGGGCTTCATGATC
GACATGGTGTTCACCTCGTACGTCCAGAGGCCCGCCAATAACCGCACCCA
CATAGGCTTTTTAACGATTATGTGGTAGAAAAATCCGTAGAGCTGGATGG
ATAGGAAGCTGACGACAAATTGCACGAGACTGAGGTAGTAGCGATCTGCG
AGAAATTCCTTCAGGGGAGTGATCTCCATCGCCACCGAGACCTGAATCTG
TCCGATGACGAGCATAATTATGGTTACTCTGTACGTGGGTCCCCCCAACT
CTTTTGGCGCGGTGGGGGGTTTTCGCGCAACATGTCGACTGATAAC
BS14589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-PA | 768 | CG12914-RA | 42..768 | 743..17 | 3635 | 100 | Minus |
CG12914-PA | 768 | CG12914-RA | 1..40 | 783..744 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 1253 | CG12914-RA | 242..1009 | 783..17 | 3815 | 99.9 | Minus |
CG12914-RB | 1238 | CG12914-RB | 242..994 | 783..17 | 3580 | 97.9 | Minus |
CG12914-RC | 1251 | CG12914-RC | 217..1007 | 783..17 | 3575 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10248941..10249160 | 236..17 | 1100 | 100 | Minus |
2R | 25286936 | 2R | 10248312..10248462 | 671..521 | 755 | 100 | Minus |
2R | 25286936 | 2R | 10248524..10248671 | 521..374 | 740 | 100 | Minus |
2R | 25286936 | 2R | 10248721..10248858 | 373..236 | 690 | 100 | Minus |
2R | 25286936 | 2R | 10248132..10248244 | 783..672 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:48:09 has no hits.
BS14589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:06 Download gff for
BS14589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-PA | 1..768 | 17..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:36 Download gff for
BS14589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1009 | 17..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:00 Download gff for
BS14589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1009 | 17..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:00 Download gff for
BS14589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10248123..10248244 | 672..792 | 95 | -> | Minus |
2R | 10248312..10248462 | 521..671 | 100 | -> | Minus |
2R | 10248525..10248671 | 374..520 | 100 | -> | Minus |
2R | 10248721..10248858 | 236..373 | 100 | -> | Minus |
2R | 10248942..10249160 | 17..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:36 Download gff for
BS14589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6135628..6135749 | 672..792 | 95 | -> | Minus |
arm_2R | 6135817..6135967 | 521..671 | 100 | -> | Minus |
arm_2R | 6136030..6136176 | 374..520 | 100 | -> | Minus |
arm_2R | 6136226..6136363 | 236..373 | 100 | -> | Minus |
arm_2R | 6136447..6136665 | 17..235 | 100 | | Minus |
BS14589.5prime Sequence
799 bp (754 high quality bases) assembled on 2006-10-13
> BS14589.5prime
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAATGAAAGCTTTTCTAGACC
BS14589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-PA | 768 | CG12914-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 1253 | CG12914-RA | 242..1009 | 17..784 | 3840 | 100 | Plus |
CG12914-RB | 1238 | CG12914-RB | 242..994 | 17..784 | 3605 | 98 | Plus |
CG12914-RC | 1251 | CG12914-RC | 217..1007 | 17..784 | 3600 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10248941..10249160 | 565..784 | 1100 | 100 | Plus |
2R | 25286936 | 2R | 10248312..10248462 | 130..280 | 755 | 100 | Plus |
2R | 25286936 | 2R | 10248524..10248671 | 280..427 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10248721..10248858 | 428..565 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10248132..10248244 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:20:46 has no hits.
BS14589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:06 Download gff for
BS14589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:56 Download gff for
BS14589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1009 | 8..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:07 Download gff for
BS14589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1009 | 8..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:07 Download gff for
BS14589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10248942..10249160 | 566..784 | 100 | | Plus |
2R | 10248123..10248244 | 8..129 | 96 | -> | Plus |
2R | 10248312..10248462 | 130..280 | 100 | -> | Plus |
2R | 10248525..10248671 | 281..427 | 100 | -> | Plus |
2R | 10248721..10248858 | 428..565 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:56 Download gff for
BS14589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6135628..6135749 | 8..129 | 96 | -> | Plus |
arm_2R | 6135817..6135967 | 130..280 | 100 | -> | Plus |
arm_2R | 6136030..6136176 | 281..427 | 100 | -> | Plus |
arm_2R | 6136226..6136363 | 428..565 | 100 | -> | Plus |
arm_2R | 6136447..6136665 | 566..784 | 100 | | Plus |
BS14589.complete Sequence
800 bp assembled on 2006-11-01
GenBank Submission: FJ637717
> BS14589.complete
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAATGAAAGCTTTCTAGACCAT
BS14589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 768 | CG12914-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG12914-RB | 753 | CG12914-PB | 1..753 | 17..784 | 3580 | 98 | Plus |
CG12914-RC | 582 | CG12914-PC | 1..550 | 17..566 | 2750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 1253 | CG12914-RA | 242..1009 | 17..784 | 3840 | 100 | Plus |
CG12914-RB | 1238 | CG12914-RB | 242..994 | 17..784 | 3580 | 98 | Plus |
CG12914-RC | 1251 | CG12914-RC | 217..766 | 17..566 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10248941..10249160 | 565..784 | 1100 | 100 | Plus |
2R | 25286936 | 2R | 10248312..10248462 | 130..280 | 755 | 100 | Plus |
2R | 25286936 | 2R | 10248524..10248671 | 280..427 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10248721..10248858 | 428..565 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10248132..10248244 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:37:15 has no hits.
BS14589.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:09 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:15 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1009 | 8..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:53 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 247..1008 | 22..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:09 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1009 | 8..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:24 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 247..1008 | 22..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:24 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10248721..10248858 | 428..565 | 100 | -> | Plus |
2R | 10248942..10249159 | 566..783 | 100 | | Plus |
2R | 10248137..10248244 | 22..129 | 100 | -> | Plus |
2R | 10248312..10248462 | 130..280 | 100 | -> | Plus |
2R | 10248525..10248671 | 281..427 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:53 Download gff for
BS14589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6136226..6136363 | 428..565 | 100 | -> | Plus |
arm_2R | 6136447..6136664 | 566..783 | 100 | | Plus |
arm_2R | 6135642..6135749 | 22..129 | 100 | -> | Plus |
arm_2R | 6135817..6135967 | 130..280 | 100 | -> | Plus |
arm_2R | 6136030..6136176 | 281..427 | 100 | -> | Plus |
BS14589.pep Sequence
Translation from 16 to 783
> BS14589.pep
MLRENPPPRQKSWVGPTYRVTIIMLVIGQIQVSVAMEITPLKEFLADRYY
LSLVQFVVSFLSIQLYGFFYHIIVKKPMWVRLLAGLWTYEVNTMSIMKPA
KRAPYISLILSIFLTFLMMIISVIYGNSAIKHKKGLFTTRHKVILWSERI
FVLTCFGIIVCAEMKRVIIEFPTLLVYTILSSVFVIVFGASMRKPNFYRQ
ESTGDYILIGQLYYLNFFALYMGYVWTTASFIELMGWRADIHDIFVYLFY
RKNIE*
BS14589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-PA | 255 | CG12914-PA | 1..255 | 1..255 | 1320 | 100 | Plus |
CG12914-PB | 250 | CG12914-PB | 1..250 | 1..255 | 1276 | 98 | Plus |
CG12914-PC | 193 | CG12914-PC | 1..192 | 1..192 | 938 | 96.4 | Plus |