Clone Sequence Records
BS14590.3prime Sequence
842 bp (727 high quality bases) assembled on 2006-10-13
> BS14590.3prime
ATGGTCTAGAAAGCTTTCAAGGCATTTTGCTGTACAGGTCCAGCAGGTTC
TGGTTCAGCAAGGATCCTCCCCGGGACATGGACGTCGCCACCTTTTCCGA
GGACGATGCCGATGTCGTGGGCTGCAGCTGTACAAACTCGCAGCCAGAGG
AGCTGGCCGCTGTGTCATTGAAAAGCACATTGCCGAAGGCCTGCTCGAAC
TGCTGCTGGAACTGGCGGGCGTTGATGGGCTGCAGATCCTCACTTTGCGC
CGGATTTATGTTCAGCTGAGCGGCCAGCTGATCCATGCTGTTGGGCTCCC
GTTGTTGGCGCTCCCGCTGGTCGGCACTCTTCGCATAGATATTATCGCCG
GCTGACTCAACGTATTCCGCGTAGTAATCTTGATCCACGTCCCTGATGAA
ACTACCGTCCATGGCCTGAAAGCCCATGCGAATCAAAAGCGATATCTTTG
TGTTAAAGCACTGCAGCCAGGCCCGATTCGTCTGGTAGATGGACAGCTGC
GCATCCTCACCGCTGGCATTCCAAAAGTCCAGCAGCGTGTTTTTCGTGAA
GTCAATCAGCATATGCCGTTTGGCATCCGGATACAACCTGTTGATCGCCT
CCAAGTGCCGAAATGTAATCTCCAGCAGATGGTGCTGATGGCGGGAAACG
AAAAGCTGCCACTTGTAGACCATAGTCATCAGATTCCACAGCTTGGACAT
CGACTGCTCGTCGAGTCGCATCAAGGAGCAGGTGGCAATGTCGTTCAGCA
TAAACTTGCAATGCTCGGCGGTCAAAAGCTGCGCACTATTGTGTTTCGAT
CCGTTTAGGAGCGAGTCTATAAACTTTTGGTCGAGCAGCACA
BS14590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13178-PA | 909 | CG13178-RA | 84..909 | 842..17 | 4080 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 202..1027 | 842..17 | 4100 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143350..12144175 | 17..842 | 4100 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:43 has no hits.
BS14590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:07 Download gff for
BS14590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-PA | 85..909 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:19 Download gff for
BS14590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 184..1011 | 13..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:35 Download gff for
BS14590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 203..1030 | 13..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:35 Download gff for
BS14590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143347..12144174 | 13..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:19 Download gff for
BS14590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030852..8031679 | 13..841 | 99 | | Plus |
BS14590.5prime Sequence
906 bp (801 high quality bases) assembled on 2006-10-13
> BS14590.5prime
GAAGTTATCAGTCGACATGCTCTACGTGATCGATCAGCGGCTGAAGGCGC
AGCAGATTGCTCAGGACAAATCGGTCCAGGTTATCCACGATGTGACTTCT
GTGCTGCTCGAACCAAAGTTTATAGACTCGCTCCTAAACGGATCGAAACA
CAATAGTGCGCAGCTTTTGACCGCCGAGCATTGCAAGTTTATGCTGAACG
ACATTGCCACCTGCTCCTTGATGCGACTCGACGAGCAGTCGATGTCCAAG
CTGTGGAATCTGATGACTATGGTCTACAAGTGGCAGCTTTTCGTTTCCCG
CCATCAGCACCATCTGCTGGAGATTACATTTCGGCACTTGGAGGCGATCA
ACAGGTTGTATCCGGATGCCAAACGGCATATGCTGATTGACTTCACGAAA
AACACGCTGCTGGACTTTTGGAATGCCAGCGGTGAGGATGCGCAGCTGTC
CATCTACCAGACGAATCGGGCCTGGCTGCAGTGCTTTAACACAAAGATAT
CGCTTTTGATTCGCATGGGCTTTCAGGCCATGGACGGTAGTTTCATCAGG
GACGTGGATCAAGATTACTACGCGGAATACGTTGAGTCAGCCGGCGATAA
TATCTATGCGAAGAGTGCCGACCAGCGGGAGCGCCAACAACGGGAGCCCA
ACAGCATGGATCAGCTGGCCGCTCAGCTGAACATAAATCCGGCGCAAAGT
GAGGATCTGCAGCCCATCAACGCCCGCCAGTTCCAGCAGCAGTTCGAGCA
GGCCTTCGGCAATGTGCTTTTCAATGACACAGCGGCCAGCTCCTCTGGCT
GCGAGTTTGTACAGCTGCAGCCCACGACATCGGCATCGTCCTCGGAAAAG
GTGGCGACGTCCATGTCCCGGGGAAGATCCTTGCTGACCCAGAACCTGCT
GGACCT
BS14590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13178-PA | 909 | CG13178-RA | 1..890 | 17..906 | 4400 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 115..1008 | 13..906 | 4425 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143369..12144195 | 906..80 | 4105 | 99.8 | Minus |
| 2R | 25286936 | 2R | 12144371..12144438 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:11:06 has no hits.
BS14590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:07 Download gff for
BS14590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:25 Download gff for
BS14590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 96..989 | 13..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:06 Download gff for
BS14590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 115..1008 | 13..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:06 Download gff for
BS14590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143369..12144194 | 81..906 | 99 | <- | Minus |
| 2R | 12144371..12144434 | 17..80 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:25 Download gff for
BS14590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8031876..8031939 | 17..80 | 100 | <- | Minus |
| arm_2R | 8030874..8031699 | 81..906 | 99 | <- | Minus |
BS14590.complete Sequence
941 bp assembled on 2006-11-01
GenBank Submission: FJ637718
> BS14590.complete
GAAGTTATCAGTCGACATGCTCTACGTGATCGATCAGCGGCTGAAGGCGC
AGCAGATTGCTCAGGACAAATCGGTCCAGGTTATCCACGATGTGACTTCT
GTGCTGCTCGAACCAAAGTTTATAGACTCGCTCCTAAACGGATCGAAACA
CAATAGTGCGCAGCTTTTGACCGCCGAGCATTGCAAGTTTATGCTGAACG
ACATTGCCACCTGCTCCTTGATGCGACTCGACGAGCAGTCGATGTCCAAG
CTGTGGAATCTGATGACTATGGTCTACAAGTGGCAGCTTTTCGTTTCCCG
CCATCAGCACCATCTGCTGGAGATTACATTTCGGCACTTGGAGGCGATCA
ACAGGTTGTATCCGGATGCCAAACGGCATATGCTGATTGACTTCACGAAA
AACACGCTGCTGGACTTTTGGAATGCCAGCGGTGAGGATGCGCAGCTGTC
CATCTACCAGACGAATCGGGCCTGGCTGCAGTGCTTTAACACAAAGATAT
CGCTTTTGATTCGCATGGGCTTTCAGGCCATGGACGGTAGTTTCATCAGG
GACGTGGATCAAGATTACTACGCGGAATACGTTGAGTCAGCCGGCGATAA
TATCTATGCGAAGAGTGCCGACCAGCGGGAGCGCCAACAACGGGAGCCCA
ACAGCATGGATCAGCTGGCCGCTCAGCTGAACATAAATCCGGCGCAAAGT
GAGGATCTGCAGCCCATCAACGCCCGCCAGTTCCAGCAGCAGTTCGAGCA
GGCCTTCGGCAATGTGCTTTTCAATGACACAGCGGCCAGCTCCTCTGGCT
GCGAGTTTGTACAGCTGCAGCCCACGACATCGGCATCGTCCTCGGAAAAG
GTGGCGACGTCCATGTCCCGGGGAGGATCCTTGCTGAACCAGAACCTGCT
GGACCTGTACAGCAAAATGCCTTGAAAGCTTTCTAGACCAT
BS14590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 909 | CG13178-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 115..1027 | 13..925 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143350..12144195 | 925..80 | 4230 | 100 | Minus |
| 2R | 25286936 | 2R | 12144371..12144438 | 80..13 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:25 has no hits.
BS14590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:10 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:16 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:45 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 100..1007 | 17..924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:10 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:32 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 119..1026 | 17..924 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:32 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143351..12144194 | 81..924 | 100 | <- | Minus |
| 2R | 12144371..12144434 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:45 Download gff for
BS14590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030856..8031699 | 81..924 | 100 | <- | Minus |
| arm_2R | 8031876..8031939 | 17..80 | 100 | | Minus |
BS14590.pep Sequence
Translation from 16 to 924
> BS14590.pep
MLYVIDQRLKAQQIAQDKSVQVIHDVTSVLLEPKFIDSLLNGSKHNSAQL
LTAEHCKFMLNDIATCSLMRLDEQSMSKLWNLMTMVYKWQLFVSRHQHHL
LEITFRHLEAINRLYPDAKRHMLIDFTKNTLLDFWNASGEDAQLSIYQTN
RAWLQCFNTKISLLIRMGFQAMDGSFIRDVDQDYYAEYVESAGDNIYAKS
ADQRERQQREPNSMDQLAAQLNINPAQSEDLQPINARQFQQQFEQAFGNV
LFNDTAASSSGCEFVQLQPTTSASSSEKVATSMSRGGSLLNQNLLDLYSK
MP*
BS14590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-PA | 302 | CG13178-PA | 1..302 | 1..302 | 1553 | 100 | Plus |
