Clone Sequence Records
BS14591.3prime Sequence
831 bp (754 high quality bases) assembled on 2006-10-13
> BS14591.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCCTCGTCACTGGACTCCTCCTGCTGA
CTGTGAGCATCTGCCTCGACATATCCTTCCTCGCTGCTGCCCTCGTACTC
CTGGTGACCGCCACCCTCCTCGTCCTCCTCCGCCTGCTCGTCCTTTCCCT
CATCGTAATCCTCGTGCACTTGGTACTGGCCATTCCCCTGGTGCTCCCGC
TCCCGTTCATCCTCCTCCTCATCATCCTCCTTCGCTTTGTGGGCCTCGGC
GCTATGGTGCCTCACCTGGCTGTCCACCGACCCGCCACCCGCATCCCCGT
CGGAACCGTGGCCGTGCAGAGTTTTCACACCATTGGTAATGACCTCGGCT
TGGAAGCCGTTGGCATCGTCGGCCGTGTATTTAACCACACGCAAGGTGCC
ATCCGGATCGACTACGCTGTACACTCCTCTCACCTCGTCCCCGTTGCGCG
TCTCCTTGCGATTCTGCAGCACGCGCGTCTTGCCATCCTCGACTCCATAG
GCGAAGCTGTACTCGGGACGGGCCACATAGTCCACGGTGCGTCCGTCGTG
GACGGTGACCAGATGCTCCGGCCCCACCACCGGACCCTCGAATCTTGCAT
AGGAGTAGCCAACCGCTGCGCATGCACCGATCATTCCGCATCCAGCAATT
AGCGCCAACAGTGGCAACAAATCTTTGAGTTGCCGCACCGCCTGGCCGAA
GCGTGCCTCTCTTCGCAACGCAATGCGGAAGCGCCAGCGAGTTGAAGTCC
GTGCTTTTGGTCCAACGCCAGGTCCATTGGCATCTCCAGCTGTGCTGGTT
ATGCGTCGCTTCTTCATGTCGACTGATAACT
BS14591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-PA | 801 | CG13670-RA | 1..801 | 817..17 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 960 | CG13670-RA | 74..875 | 817..16 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8321792..8322195 | 419..16 | 2020 | 100 | Minus |
3L | 28110227 | 3L | 8320836..8321236 | 817..417 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:13:38 has no hits.
BS14591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:07 Download gff for
BS14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-PA | 1..801 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:17 Download gff for
BS14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:33 Download gff for
BS14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:33 Download gff for
BS14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8320830..8321236 | 417..824 | 99 | -> | Minus |
3L | 8321795..8322198 | 10..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:17 Download gff for
BS14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8313930..8314336 | 417..824 | 99 | -> | Minus |
arm_3L | 8314895..8315298 | 10..416 | 99 | | Minus |
BS14591.5prime Sequence
831 bp (728 high quality bases) assembled on 2006-10-13
> BS14591.5prime
GAAGTTATCAGTCGACATGAAGAAGCGACGCATAACCAGCACAGCTGGAG
ATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGG
CGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGGCGGTGCG
GCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAA
TGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGT
CCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGT
GGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTCGAGGATG
GCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAG
GTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGT
TAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCA
ATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGC
GGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCCACAAAGC
GAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGA
ATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAG
GCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAGTACGAGGGCAGCAG
CGAGGAAGGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAGGAGTCCA
GTGACGAGGACTACTAGAAGCTTTCTAGACC
BS14591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-PA | 801 | CG13670-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 960 | CG13670-RA | 74..875 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8321792..8322195 | 415..818 | 2020 | 100 | Plus |
3L | 28110227 | 3L | 8320836..8321236 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:11:24 has no hits.
BS14591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:08 Download gff for
BS14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:44 Download gff for
BS14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:01 Download gff for
BS14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:01 Download gff for
BS14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8320830..8321236 | 10..417 | 99 | -> | Plus |
3L | 8321795..8322198 | 418..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:44 Download gff for
BS14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8313930..8314336 | 10..417 | 99 | -> | Plus |
arm_3L | 8314895..8315298 | 418..824 | 99 | | Plus |
BS14591.complete Sequence
833 bp assembled on 2006-11-01
GenBank Submission: FJ637719
> BS14591.complete
GAAGTTATCAGTCGACATGAAGAAGCGACGCATAACCAGCACAGCTGGAG
ATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGG
CGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGGCGGTGCG
GCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAA
TGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGT
CCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGT
GGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTCGAGGATG
GCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAG
GTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGT
TAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCA
ATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGC
GGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCCACAAAGC
GAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGA
ATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAG
GCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAGTACGAGGGCAGCAG
CGAGGAAGGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAGGAGTCCA
GTGACGAGGACTACTAGAAGCTTTCTAGACCAT
BS14591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 801 | CG13670-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 960 | CG13670-RA | 74..875 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8321792..8322195 | 415..818 | 2020 | 100 | Plus |
3L | 28110227 | 3L | 8320836..8321236 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:16 has no hits.
BS14591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:11 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:18 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:25 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 74..874 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:12 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:57 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 74..874 | 17..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:57 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8321795..8322194 | 418..817 | 100 | | Plus |
3L | 8320836..8321236 | 17..417 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:25 Download gff for
BS14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8313936..8314336 | 17..417 | 100 | -> | Plus |
arm_3L | 8314895..8315294 | 418..817 | 100 | | Plus |
BS14591.pep Sequence
Translation from 16 to 816
> BS14591.pep
MKKRRITSTAGDANGPGVGPKARTSTRWRFRIALRREARFGQAVRQLKDL
LPLLALIAGCGMIGACAAVGYSYARFEGPVVGPEHLVTVHDGRTVDYVAR
PEYSFAYGVEDGKTRVLQNRKETRNGDEVRGVYSVVDPDGTLRVVKYTAD
DANGFQAEVITNGVKTLHGHGSDGDAGGGSVDSQVRHHSAEAHKAKEDDE
EEDEREREHQGNGQYQVHEDYDEGKDEQAEEDEEGGGHQEYEGSSEEGYV
EADAHSQQEESSDEDY*
BS14591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-PA | 266 | CG13670-PA | 1..266 | 1..266 | 1405 | 100 | Plus |
Cpr62Bb-PC | 194 | CG13935-PC | 24..181 | 92..243 | 199 | 31.4 | Plus |
Cpr62Bb-PB | 194 | CG13935-PB | 24..181 | 92..243 | 199 | 31.4 | Plus |
Cpr62Bb-PA | 194 | CG13935-PA | 24..181 | 92..243 | 199 | 31.4 | Plus |
Cpr62Bc-PB | 180 | CG1919-PB | 41..119 | 90..168 | 192 | 46.8 | Plus |