Clone Sequence Records
BS14595.3prime Sequence
931 bp (726 high quality bases) assembled on 2006-10-13
> BS14595.3prime
ATGGTCTAGAAAGCTTTTAATTGTACTTCTCCCCTCCCAGGGAGCAAATT
CCGAAATGGAGCCTCAGTTGCTCGTACAAAACAAATAGCAAAGTGGTGGC
CGGTGCTTTTCGCACTATAGTTGGCACAAATCCTCGATAGGGTCCCATTA
CGCCAAAGCGCATCATGTGAACAGACGCTTGGAAGACTGTGCGAAATTCG
CCGGGTCTGGAGTTCATCATAATGGTCCTTACCACGTCCAGGGGATGAGT
GATCGCAGACGAAATGATCGATGTACCCAGCGAAGTGAGAAAGTGCAAGG
GCAATCCGTCATTCACAGAGATATTTTTCCTCACTTCCGTTTTAATAATA
TCGTAGAAAGCTATCTGGCTGCAAGTGCTTAGCGATGATTTGAAGACCGC
TACCGATCCACCTTTGTAAAGTGCCTTCCAGCCCTCCTCCTTGGGAATTC
GAATGAGTCCATCGAAGACATGCTTATAGTTGCGTCGCTTGTACGGCGGC
TCCTTCATATCGGTTTGCATCCGCACGTTAATCAGATCCGTTGGTATACC
AAACGCAGAACCGCAAGCTCCAGCCACGCAGCCCAAAATAATCTTTCCCA
GATATGAATCCCTATCGACGTACTCCATTTTCTTGCCAGTATCATACACT
ATGAAATGGATATTGGTGCTGGTCATTTGTCTCAGGATGGCAGCCGAGAA
GCCATCGTAGAAGCCCAAGTATCCTTTTAAAGAGTGTATTCTTTTGACCG
TGCCTAAAATTGAACGCTTTTGCCTTTGGATCTGCATGTGAGTTTTCACG
ATATCAATGGGCGCCACTGCGAAAGCAACGCACATCGAGGCAAAGCCACC
GAACCACCAACGCGGCAAAAGTCCTTCGGGCTCATCATGGCAGTCGCCAA
GGAAGTGGTCATCAAAAACCGGCATGTCGAC
BS14595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18363-PA | 909 | CG18363-RA | 1..909 | 925..17 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 1811 | CG18363-RC | 142..1050 | 925..17 | 4530 | 99.9 | Minus |
Dic4-RA | 1144 | CG18363-RA | 142..1050 | 925..17 | 4530 | 99.9 | Minus |
Dic4-RB | 1140 | CG18363-RB | 142..1046 | 925..17 | 4460 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18697163..18697492 | 17..346 | 1650 | 100 | Plus |
3L | 28110227 | 3L | 18697760..18698009 | 476..725 | 1235 | 99.6 | Plus |
3L | 28110227 | 3L | 18698069..18698271 | 723..925 | 1000 | 99.5 | Plus |
3L | 28110227 | 3L | 18697567..18697699 | 347..479 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:51 has no hits.
BS14595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:10 Download gff for
BS14595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-PA | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:39 Download gff for
BS14595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 137..1057 | 9..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:11 Download gff for
BS14595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 137..1057 | 9..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:11 Download gff for
BS14595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18698070..18698274 | 724..931 | 98 | | Plus |
3L | 18697156..18697492 | 9..346 | 98 | <- | Plus |
3L | 18697567..18697699 | 347..479 | 100 | <- | Plus |
3L | 18697764..18698007 | 480..723 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:39 Download gff for
BS14595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18690256..18690592 | 9..346 | 98 | <- | Plus |
arm_3L | 18690667..18690799 | 347..479 | 100 | <- | Plus |
arm_3L | 18690864..18691107 | 480..723 | 100 | <- | Plus |
arm_3L | 18691170..18691374 | 724..931 | 98 | | Plus |
BS14595.5prime Sequence
837 bp (824 high quality bases) assembled on 2006-10-13
> BS14595.5prime
GAAGTTATCAGTCGACATGCCGGTTTTTGATGACCACTTCCTTGGCGACT
GCCATGATGAGCCCGAAGGACTTTTGCCGCGTTGGTGGTTCGGTGGCTTT
GCCTCGATGTGCGTTGCCTTCGCAGTGGCGCCCATTGATATCGTGAAAAC
TCACATGCAGATCCAAAGGCAAAAGCGTTCAATTTTAGGCACGGTCAAAA
GAATACACTCTTTAAAAGGATACTTGGGCTTCTACGATGGCTTCTCGGCT
GCCATCCTGAGACAAATGACCAGCACCAATATCCATTTCATAGTGTATGA
TACTGGCAAGAAAATGGAGTACGTCGATAGGGATTCATATCTGGGAAAGA
TTATTTTGGGCTGCGTGGCTGGAGCTTGCGGTTCTGCGTTTGGTATACCA
ACGGATCTGATTAACGTGCGGATGCAAACCGATATGAAGGAGCCGCCGTA
CAAGCGACGCAACTATAAGCATGTCTTCGATGGACTCATTCGAATTCCCA
AGGAGGAGGGCTGGAAGGCACTTTACAAAGGTGGATCGGTAGCGGTCTTC
AAATCATCGCTAAGCACTTGCAGCCAGATAGCTTTCTACGATATTATTAA
AACGGAAGTGAGGAAAAATATCTCTGTGAATGACGGATTGCCCTTGCACT
TTCTCACTTCGCTGGGTACATCGATCATTTCGTCTGCGATCACTCATCCC
CTGGACGTGGTAAGGACCATTATGATGAACTCCAGACCCGGCGAATTTCG
CACAGTCTTCCAAGCGTCTGTTCACATGATGCGCTTTGGCGTAATGGGAC
CCTATCGAGGATTTGTGCCAACTATAGTGCGAAAAGC
BS14595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18363-PA | 909 | CG18363-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 1811 | CG18363-RC | 142..962 | 17..837 | 4105 | 100 | Plus |
Dic4-RA | 1144 | CG18363-RA | 142..962 | 17..837 | 4105 | 100 | Plus |
Dic4-RB | 1140 | CG18363-RB | 142..958 | 17..837 | 4035 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18697760..18698009 | 466..217 | 1235 | 99.6 | Minus |
3L | 28110227 | 3L | 18697251..18697492 | 837..596 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 18698069..18698271 | 219..17 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 18697567..18697699 | 595..463 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:22:46 has no hits.
BS14595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:11 Download gff for
BS14595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:18 Download gff for
BS14595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 138..962 | 10..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:25 Download gff for
BS14595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 138..962 | 10..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:25 Download gff for
BS14595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18697251..18697492 | 596..837 | 100 | <- | Minus |
3L | 18697567..18697699 | 463..595 | 100 | <- | Minus |
3L | 18697764..18698007 | 219..462 | 100 | <- | Minus |
3L | 18698070..18698275 | 10..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:18 Download gff for
BS14595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18690351..18690592 | 596..837 | 100 | <- | Minus |
arm_3L | 18690667..18690799 | 463..595 | 100 | <- | Minus |
arm_3L | 18690864..18691107 | 219..462 | 100 | <- | Minus |
arm_3L | 18691170..18691375 | 10..218 | 98 | | Minus |
BS14595.complete Sequence
941 bp assembled on 2006-11-01
GenBank Submission: FJ637721
> BS14595.complete
GAAGTTATCAGTCGACATGCCGGTTTTTGATGACCACTTCCTTGGCGACT
GCCATGATGAGCCCGAAGGACTTTTGCCGCGTTGGTGGTTCGGTGGCTTT
GCCTCGATGTGCGTTGCCTTCGCAGTGGCGCCCATTGATATCGTGAAAAC
TCACATGCAGATCCAAAGGCAAAAGCGTTCAATTTTAGGCACGGTCAAAA
GAATACACTCTTTAAAAGGATACTTGGGCTTCTACGATGGCTTCTCGGCT
GCCATCCTGAGACAAATGACCAGCACCAATATCCATTTCATAGTGTATGA
TACTGGCAAGAAAATGGAGTACGTCGATAGGGATTCATATCTGGGAAAGA
TTATTTTGGGCTGCGTGGCTGGAGCTTGCGGTTCTGCGTTTGGTATACCA
ACGGATCTGATTAACGTGCGGATGCAAACCGATATGAAGGAGCCGCCGTA
CAAGCGACGCAACTATAAGCATGTCTTCGATGGACTCATTCGAATTCCCA
AGGAGGAGGGCTGGAAGGCACTTTACAAAGGTGGATCGGTAGCGGTCTTC
AAATCATCGCTAAGCACTTGCAGCCAGATAGCTTTCTACGATATTATTAA
AACGGAAGTGAGGAAAAATATCTCTGTGAATGACGGATTGCCCTTGCACT
TTCTCACTTCGCTGGGTACATCGATCATTTCGTCTGCGATCACTCATCCC
CTGGACGTGGTAAGGACCATTATGATGAACTCCAGACCCGGCGAATTTCG
CACAGTCTTCCAAGCGTCTGTTCACATGATGCGCTTTGGCGTAATGGGAC
CCTATCGAGGATTTGTGCCAACTATAGTGCGAAAAGCACCGGCCACCACT
TTGCTATTTGTTTTGTACGAGCAACTGAGGCTCCATTTCGGAATTTGCTC
CCTGGGAGGGGAGAAGTACAATTAAAAGCTTTCTAGACCAT
BS14595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 909 | CG18363-PC | 1..909 | 17..925 | 4545 | 100 | Plus |
Dic4-RA | 909 | CG18363-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Dic4-RB | 522 | CG18363-PB | 1..522 | 17..542 | 2535 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-RC | 1811 | CG18363-RC | 142..1050 | 17..925 | 4545 | 100 | Plus |
Dic4-RA | 1144 | CG18363-RA | 142..1050 | 17..925 | 4545 | 100 | Plus |
Dic4-RB | 1140 | CG18363-RB | 142..1046 | 17..925 | 4450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18697163..18697492 | 925..596 | 1650 | 100 | Minus |
3L | 28110227 | 3L | 18697760..18698009 | 466..217 | 1235 | 99.6 | Minus |
3L | 28110227 | 3L | 18698069..18698271 | 219..17 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 18697567..18697699 | 595..463 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:16 has no hits.
BS14595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:16 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:21 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-RA | 138..1057 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:31 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 142..1048 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:16 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18363-RA | 138..1057 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:48 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic4-RA | 142..1048 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:48 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18697165..18697492 | 596..923 | 100 | <- | Minus |
3L | 18697567..18697699 | 463..595 | 100 | <- | Minus |
3L | 18697764..18698007 | 219..462 | 100 | <- | Minus |
3L | 18698070..18698271 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:31 Download gff for
BS14595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18690265..18690592 | 596..923 | 100 | <- | Minus |
arm_3L | 18690667..18690799 | 463..595 | 100 | <- | Minus |
arm_3L | 18690864..18691107 | 219..462 | 100 | <- | Minus |
arm_3L | 18691170..18691371 | 17..218 | 100 | | Minus |
BS14595.pep Sequence
Translation from 16 to 924
> BS14595.pep
MPVFDDHFLGDCHDEPEGLLPRWWFGGFASMCVAFAVAPIDIVKTHMQIQ
RQKRSILGTVKRIHSLKGYLGFYDGFSAAILRQMTSTNIHFIVYDTGKKM
EYVDRDSYLGKIILGCVAGACGSAFGIPTDLINVRMQTDMKEPPYKRRNY
KHVFDGLIRIPKEEGWKALYKGGSVAVFKSSLSTCSQIAFYDIIKTEVRK
NISVNDGLPLHFLTSLGTSIISSAITHPLDVVRTIMMNSRPGEFRTVFQA
SVHMMRFGVMGPYRGFVPTIVRKAPATTLLFVLYEQLRLHFGICSLGGEK
YN*
BS14595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic4-PC | 302 | CG18363-PC | 1..302 | 1..302 | 1596 | 100 | Plus |
Dic4-PA | 302 | CG18363-PA | 1..302 | 1..302 | 1596 | 100 | Plus |
Dic4-PB | 173 | CG18363-PB | 1..147 | 1..147 | 793 | 100 | Plus |
Dic3-PA | 287 | CG11196-PA | 9..281 | 20..292 | 588 | 42.9 | Plus |
Dic1-PC | 280 | CG8790-PC | 10..277 | 23..292 | 576 | 41.9 | Plus |