Clone Sequence Records
BS14601.3prime Sequence
816 bp (696 high quality bases) assembled on 2006-10-13
> BS14601.3prime
ATGGTCTAGAAAGCTTTCATTTGGCAGACTTGCCTTCCTCGTCTTTCTTC
TTGTCCTTTGCATCCTTCTTGGGTTCCTTTTTGGTATCCTTGGGAGCATC
TTTCTTCGCATCCTTCGGAGCCTCTTTTTTAGCCTTTTGACCCTTTTTGG
TTTTTGTGAGATCTACCACCTCCTCCTTAACCTTCTCGCCCACTTTAACG
GCCAGCAAAAAGGCAGACAGAGCAATGGTTAGAGCCACAGCCACATAGCC
GGTGGCATAGATCTCTGGTATCGTGAGAAACTTGTTCAAATACCAGATCA
AATGTCGAGTTCCGGCGACTGTATGGTAGGCAAATGGCATGGTCACCATC
ACCTTGGCCATCGTCACCATGCCGTGGCAGTCACATTTTTCGACTTTCTT
TATAAATCCCTCCATATCGCCTTGCAAGCAAAGGCCGCTGATTCCCACGA
ACCAAACAAAAACGGCCAGAACAAACCCACTAATTCGTAGAAATGCGGAC
AAGGTGGAAGTCAATTGAATTTTGTAGATGGACAAATGTGGCGATAACTG
TCTTCCAAGCAGCATATTTCGATCGTCATAAGGCAAATCGGGAGGCATAC
GAAAGGGTATCACTTTCAAAGTGACAGGCGGAACGAGGATATCGCCACTA
GGTCCAATTGTCGTGGGTCCACTAGCCTTATGATCCTTTGGGGCTTTAGT
AGCCAGAAGACGAGCCGAGTTGAATGGTTTTTGGGCGAGCAAGTGCCTTA
ATTGCGGACTGCAAATATTCAATCCTCGAGCCAATGAGCGACAAGTGTTC
ATGTCGACTGATAACT
BS14601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-PA | 786 | CG6629-RA | 1..786 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 983 | CG6629-RA | 110..895 | 802..17 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11114759..11115534 | 17..792 | 3880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:11:52 has no hits.
BS14601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:11 Download gff for
BS14601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:36 Download gff for
BS14601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..895 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:38 Download gff for
BS14601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..895 | 17..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:38 Download gff for
BS14601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11114759..11115534 | 17..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:36 Download gff for
BS14601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6940481..6941256 | 17..792 | 100 | | Plus |
BS14601.5prime Sequence
781 bp (710 high quality bases) assembled on 2006-10-13
> BS14601.5prime
GAAGTTATCAGTCGACATGAACACTTGTCGCTCATTGGCTCGAGGATTGA
ATATTTGCAGTCCGCAATTAAGGCACTTGCTCGCCCAAAAACCATTCAAC
TCGGCTCGTCTTCTGGCTACTAAAGCCCCAAAGGATCATAAGGCTAGTGG
ACCCACGACAATTGGACCTAGTGGCGATATCCTCGTTCCGCCTGTCACTT
TGAAAGTGATACCCTTTCGTATGCCTCCCGATTTGCCTTATGACGATCGA
AATATGCTGCTTGGAAGACAGTTATCGCCACATTTGTCCATCTACAAAAT
TCAATTGACTTCCACCTTGTCCGCATTTCTACGAATTAGTGGGTTTGTTC
TGGCCGTTTTTGTTTGGTTCGTGGGAATCAGCGGCCTTTGCTTGCAAGGC
GATATGGAGGGATTTATAAAGAAAGTCGAAAAATGTGACTGCCACGGCAT
GGTGACGATGGCCAAGGTGATGGTGACCATGCCATTTGCCTACCATACAG
TCGCCGGAACTCGACATTTGATCTGGTATTTGAACAAGTTTCTCACGATA
CCAGAGATCTATGCCACCGGCTATGTGGCTGTGGCTCTAACCATTGCTCT
GTCTGCCTTTTTGCTGGCCGTTAAAGTGGGCGAGAAGGTTAAGGAGGAGG
TGGTAGATCTCACAAAAACCAAAAAGGGTCAAAAGGCTAAAAAAGAGGCT
CCGAAGGATGCAAAGAAAGATGCTCCCAAGGATACCAAAAAGGAACCCAA
GAAGGATGCAAAGGACAAGAAAAAAGACGAG
BS14601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-PA | 786 | CG6629-RA | 1..765 | 17..781 | 3775 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 983 | CG6629-RA | 110..874 | 17..781 | 3795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11114780..11115534 | 781..27 | 3745 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:12:07 has no hits.
BS14601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:12 Download gff for
BS14601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:40 Download gff for
BS14601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..874 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:05 Download gff for
BS14601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..874 | 17..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:05 Download gff for
BS14601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11114780..11115534 | 27..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:40 Download gff for
BS14601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6940502..6941256 | 27..781 | 99 | | Minus |
BS14601.complete Sequence
818 bp assembled on 2006-11-01
GenBank Submission: FJ637722
> BS14601.complete
GAAGTTATCAGTCGACATGAACACTTGTCGCTCATTGGCTCGAGGATTGA
ATATTTGCAGTCCGCAATTAAGGCACTTGCTCGCCCAAAAACCATTCAAC
TCGGCTCGTCTTCTGGCTACTAAAGCCCCAAAGGATCATAAGGCTAGTGG
ACCCACGACAATTGGACCTAGTGGCGATATCCTCGTTCCGCCTGTCACTT
TGAAAGTGATACCCTTTCGTATGCCTCCCGATTTGCCTTATGACGATCGA
AATATGCTGCTTGGAAGACAGTTATCGCCACATTTGTCCATCTACAAAAT
TCAATTGACTTCCACCTTGTCCGCATTTCTACGAATTAGTGGGTTTGTTC
TGGCCGTTTTTGTTTGGTTCGTGGGAATCAGCGGCCTTTGCTTGCAAGGC
GATATGGAGGGATTTATAAAGAAAGTCGAAAAATGTGACTGCCACGGCAT
GGTGACGATGGCCAAGGTGATGGTGACCATGCCATTTGCCTACCATACAG
TCGCCGGAACTCGACATTTGATCTGGTATTTGAACAAGTTTCTCACGATA
CCAGAGATCTATGCCACCGGCTATGTGGCTGTGGCTCTAACCATTGCTCT
GTCTGCCTTTTTGCTGGCCGTTAAAGTGGGCGAGAAGGTTAAGGAGGAGG
TGGTAGATCTCACAAAAACCAAAAAGGGTCAAAAGGCTAAAAAAGAGGCT
CCGAAGGATGCGAAGAAAGATGCTCCCAAGGATACCAAAAAGGAACCCAA
GAAGGATGCAAAGGACAAGAAGAAAGACGAGGAAGGCAAGTCTGCCAAAT
GAAAGCTTTCTAGACCAT
BS14601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 786 | CG6629-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-RA | 983 | CG6629-RA | 110..895 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11114759..11115534 | 802..27 | 3880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:59:20 has no hits.
BS14601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:07 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:03 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..895 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:11 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..894 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:07 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..895 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:36 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6629-RA | 110..894 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:36 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11114760..11115534 | 27..801 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:11 Download gff for
BS14601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6940482..6941256 | 27..801 | 100 | | Minus |
BS14601.pep Sequence
Translation from 16 to 801
> BS14601.pep
MNTCRSLARGLNICSPQLRHLLAQKPFNSARLLATKAPKDHKASGPTTIG
PSGDILVPPVTLKVIPFRMPPDLPYDDRNMLLGRQLSPHLSIYKIQLTST
LSAFLRISGFVLAVFVWFVGISGLCLQGDMEGFIKKVEKCDCHGMVTMAK
VMVTMPFAYHTVAGTRHLIWYLNKFLTIPEIYATGYVAVALTIALSAFLL
AVKVGEKVKEEVVDLTKTKKGQKAKKEAPKDAKKDAPKDTKKEPKKDAKD
KKKDEEGKSAK*
BS14601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6629-PA | 261 | CG6629-PA | 1..261 | 1..261 | 1350 | 100 | Plus |
| SdhC-PB | 171 | CG6666-PB | 26..168 | 59..199 | 265 | 41.3 | Plus |
| SdhC-PA | 171 | CG6666-PA | 26..168 | 59..199 | 265 | 41.3 | Plus |
