Clone BS14603 Report

Search the DGRC for BS14603

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptPsf3-RA
Protein status:BS14603.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14603.3prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-13

> BS14603.3prime
ATGGTCTAGAAAGCTTTTACAAGGTGGCCCGCTTGCTGTTGGGCAGAGCA
TCGCCCTCGTCATCGCTGCGATCCGCACGTCGCCGCTTCTTTTGGTGCTC
CTCGACCAGCTCCGAGGTGCGAATCTTGTTGCCCGTCATCTGCAGCCATT
CGATGTACTGACTGTTGGTGCGCACTCCAGCCTCGTGCAGCTTGGCCTCG
ATGTTATCCAGTCGATGCTCCGCCTTGGCTGCCTGTCCGTCGCTCTTCGA
GATGTCCAGGAGATGACGTACCCTCTGGCGCAGCGTTTCGAAGATGATGC
GGCCGATGACATGGTTGCGATCGTAGGGCGTCAGATAGCGACCGAACTCG
TAGAAGTACGGGTGCAGGCGTCCCAGCTCGATGTGCGTGGTCTCCGCCTC
GCAGACGGCCTTATGCACATTGCGATAGATATCTGGCACGGCGACGGTGA
AGTAGGCATTGTTTACCTTCAGCTCCTTGATGTACCACAACGGCAGATTG
ACCGTCCTGCCGGGCTCCAGGTCATCCGATTCCGCGCCGGAGTCCAGGAA
TCCCATCCGCTGCAGCTTGGTGTTCACCCGACATTCCACCTTCTCCTGGG
TCACGAATATGTCCTCGATGGAGTAATAGTTCGGAAAATAGTTCATTCCG
TTCATGTCGACTGATAACT

BS14603.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2222-PA 639 CG2222-RA 1..639 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 2380 CG2222-RC 809..1447 655..17 3195 100 Minus
Psf3-RB 1668 CG2222-RB 97..735 655..17 3195 100 Minus
Psf3-RA 1150 CG2222-RA 97..735 655..17 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10384488..10384883 158..553 1980 100 Plus
X 23542271 X 10384286..10384430 17..161 725 100 Plus
X 23542271 X 10384950..10385053 552..655 520 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:04:34 has no hits.

BS14603.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:13 Download gff for BS14603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2222-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:04 Download gff for BS14603.3prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..740 13..655 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:08 Download gff for BS14603.3prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..740 13..655 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:08 Download gff for BS14603.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10384281..10384426 13..157 99 <- Plus
X 10384488..10384882 158..552 100 <- Plus
X 10384951..10385053 553..655 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:04 Download gff for BS14603.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10278314..10278459 13..157 99 <- Plus
arm_X 10278521..10278915 158..552 100 <- Plus
arm_X 10278984..10279086 553..655 100   Plus

BS14603.5prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-13

> BS14603.5prime
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGTAAAAGCTTTCTAGACC

BS14603.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2222-PA 639 CG2222-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 2380 CG2222-RC 809..1447 17..655 3195 100 Plus
Psf3-RB 1668 CG2222-RB 97..735 17..655 3195 100 Plus
Psf3-RA 1150 CG2222-RA 97..735 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10384488..10384883 514..119 1980 100 Minus
X 23542271 X 10384286..10384430 655..511 725 100 Minus
X 23542271 X 10384950..10385053 120..17 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:48:32 has no hits.

BS14603.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:14 Download gff for BS14603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2222-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:46 Download gff for BS14603.5prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..740 17..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:19 Download gff for BS14603.5prime
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..740 17..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:19 Download gff for BS14603.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10384281..10384426 515..659 99 <- Minus
X 10384488..10384882 120..514 100 <- Minus
X 10384951..10385053 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:46 Download gff for BS14603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10278314..10278459 515..659 99 <- Minus
arm_X 10278521..10278915 120..514 100 <- Minus
arm_X 10278984..10279086 17..119 100   Minus

BS14603.complete Sequence

671 bp assembled on 2006-11-01

GenBank Submission: FJ637723

> BS14603.complete
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGTAAAAGCTTTCTAGACCAT

BS14603.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 639 CG2222-PC 1..639 17..655 3195 100 Plus
Psf3-RB 639 CG2222-PB 1..639 17..655 3195 100 Plus
Psf3-RA 639 CG2222-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-RC 2380 CG2222-RC 809..1447 17..655 3195 100 Plus
Psf3-RB 1668 CG2222-RB 97..735 17..655 3195 100 Plus
Psf3-RA 1150 CG2222-RA 97..735 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10384488..10384883 514..119 1980 100 Minus
X 23542271 X 10384286..10384430 655..511 725 100 Minus
X 23542271 X 10384950..10385053 120..17 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:12:05 has no hits.

BS14603.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:41 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:44 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 82..725 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:32 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..733 17..653 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:42 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 82..725 17..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:36 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
Psf3-RA 97..733 17..653 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:36 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
X 10384288..10384426 515..653 100 <- Minus
X 10384488..10384882 120..514 100 <- Minus
X 10384951..10385053 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:32 Download gff for BS14603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10278321..10278459 515..653 100 <- Minus
arm_X 10278521..10278915 120..514 100 <- Minus
arm_X 10278984..10279086 17..119 100   Minus

BS14603.pep Sequence

Translation from 16 to 654

> BS14603.pep
MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR
TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY
FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD
NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE
GDALPNSKRATL*

BS14603.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Psf3-PC 212 CG2222-PC 1..212 1..212 1119 100 Plus
Psf3-PB 212 CG2222-PB 1..212 1..212 1119 100 Plus
Psf3-PA 212 CG2222-PA 1..212 1..212 1119 100 Plus