Clone Sequence Records
BS14603.3prime Sequence
669 bp (669 high quality bases) assembled on 2006-10-13
> BS14603.3prime
ATGGTCTAGAAAGCTTTTACAAGGTGGCCCGCTTGCTGTTGGGCAGAGCA
TCGCCCTCGTCATCGCTGCGATCCGCACGTCGCCGCTTCTTTTGGTGCTC
CTCGACCAGCTCCGAGGTGCGAATCTTGTTGCCCGTCATCTGCAGCCATT
CGATGTACTGACTGTTGGTGCGCACTCCAGCCTCGTGCAGCTTGGCCTCG
ATGTTATCCAGTCGATGCTCCGCCTTGGCTGCCTGTCCGTCGCTCTTCGA
GATGTCCAGGAGATGACGTACCCTCTGGCGCAGCGTTTCGAAGATGATGC
GGCCGATGACATGGTTGCGATCGTAGGGCGTCAGATAGCGACCGAACTCG
TAGAAGTACGGGTGCAGGCGTCCCAGCTCGATGTGCGTGGTCTCCGCCTC
GCAGACGGCCTTATGCACATTGCGATAGATATCTGGCACGGCGACGGTGA
AGTAGGCATTGTTTACCTTCAGCTCCTTGATGTACCACAACGGCAGATTG
ACCGTCCTGCCGGGCTCCAGGTCATCCGATTCCGCGCCGGAGTCCAGGAA
TCCCATCCGCTGCAGCTTGGTGTTCACCCGACATTCCACCTTCTCCTGGG
TCACGAATATGTCCTCGATGGAGTAATAGTTCGGAAAATAGTTCATTCCG
TTCATGTCGACTGATAACT
BS14603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2222-PA | 639 | CG2222-RA | 1..639 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 2380 | CG2222-RC | 809..1447 | 655..17 | 3195 | 100 | Minus |
Psf3-RB | 1668 | CG2222-RB | 97..735 | 655..17 | 3195 | 100 | Minus |
Psf3-RA | 1150 | CG2222-RA | 97..735 | 655..17 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10384488..10384883 | 158..553 | 1980 | 100 | Plus |
X | 23542271 | X | 10384286..10384430 | 17..161 | 725 | 100 | Plus |
X | 23542271 | X | 10384950..10385053 | 552..655 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:04:34 has no hits.
BS14603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:13 Download gff for
BS14603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2222-PA | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:04 Download gff for
BS14603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..740 | 13..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:08 Download gff for
BS14603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..740 | 13..655 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:08 Download gff for
BS14603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10384281..10384426 | 13..157 | 99 | <- | Plus |
X | 10384488..10384882 | 158..552 | 100 | <- | Plus |
X | 10384951..10385053 | 553..655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:04 Download gff for
BS14603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10278314..10278459 | 13..157 | 99 | <- | Plus |
arm_X | 10278521..10278915 | 158..552 | 100 | <- | Plus |
arm_X | 10278984..10279086 | 553..655 | 100 | | Plus |
BS14603.5prime Sequence
669 bp (669 high quality bases) assembled on 2006-10-13
> BS14603.5prime
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGTAAAAGCTTTCTAGACC
BS14603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2222-PA | 639 | CG2222-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 2380 | CG2222-RC | 809..1447 | 17..655 | 3195 | 100 | Plus |
Psf3-RB | 1668 | CG2222-RB | 97..735 | 17..655 | 3195 | 100 | Plus |
Psf3-RA | 1150 | CG2222-RA | 97..735 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10384488..10384883 | 514..119 | 1980 | 100 | Minus |
X | 23542271 | X | 10384286..10384430 | 655..511 | 725 | 100 | Minus |
X | 23542271 | X | 10384950..10385053 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:48:32 has no hits.
BS14603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:14 Download gff for
BS14603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2222-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:46 Download gff for
BS14603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..740 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:19 Download gff for
BS14603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..740 | 17..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:19 Download gff for
BS14603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10384281..10384426 | 515..659 | 99 | <- | Minus |
X | 10384488..10384882 | 120..514 | 100 | <- | Minus |
X | 10384951..10385053 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:46 Download gff for
BS14603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10278314..10278459 | 515..659 | 99 | <- | Minus |
arm_X | 10278521..10278915 | 120..514 | 100 | <- | Minus |
arm_X | 10278984..10279086 | 17..119 | 100 | | Minus |
BS14603.complete Sequence
671 bp assembled on 2006-11-01
GenBank Submission: FJ637723
> BS14603.complete
GAAGTTATCAGTCGACATGAACGGAATGAACTATTTTCCGAACTATTACT
CCATCGAGGACATATTCGTGACCCAGGAGAAGGTGGAATGTCGGGTGAAC
ACCAAGCTGCAGCGGATGGGATTCCTGGACTCCGGCGCGGAATCGGATGA
CCTGGAGCCCGGCAGGACGGTCAATCTGCCGTTGTGGTACATCAAGGAGC
TGAAGGTAAACAATGCCTACTTCACCGTCGCCGTGCCAGATATCTATCGC
AATGTGCATAAGGCCGTCTGCGAGGCGGAGACCACGCACATCGAGCTGGG
ACGCCTGCACCCGTACTTCTACGAGTTCGGTCGCTATCTGACGCCCTACG
ATCGCAACCATGTCATCGGCCGCATCATCTTCGAAACGCTGCGCCAGAGG
GTACGTCATCTCCTGGACATCTCGAAGAGCGACGGACAGGCAGCCAAGGC
GGAGCATCGACTGGATAACATCGAGGCCAAGCTGCACGAGGCTGGAGTGC
GCACCAACAGTCAGTACATCGAATGGCTGCAGATGACGGGCAACAAGATT
CGCACCTCGGAGCTGGTCGAGGAGCACCAAAAGAAGCGGCGACGTGCGGA
TCGCAGCGATGACGAGGGCGATGCTCTGCCCAACAGCAAGCGGGCCACCT
TGTAAAAGCTTTCTAGACCAT
BS14603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 639 | CG2222-PC | 1..639 | 17..655 | 3195 | 100 | Plus |
Psf3-RB | 639 | CG2222-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Psf3-RA | 639 | CG2222-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-RC | 2380 | CG2222-RC | 809..1447 | 17..655 | 3195 | 100 | Plus |
Psf3-RB | 1668 | CG2222-RB | 97..735 | 17..655 | 3195 | 100 | Plus |
Psf3-RA | 1150 | CG2222-RA | 97..735 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10384488..10384883 | 514..119 | 1980 | 100 | Minus |
X | 23542271 | X | 10384286..10384430 | 655..511 | 725 | 100 | Minus |
X | 23542271 | X | 10384950..10385053 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:12:05 has no hits.
BS14603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:41 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:44 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 82..725 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:32 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..733 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:42 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 82..725 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:36 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psf3-RA | 97..733 | 17..653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:36 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10384288..10384426 | 515..653 | 100 | <- | Minus |
X | 10384488..10384882 | 120..514 | 100 | <- | Minus |
X | 10384951..10385053 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:32 Download gff for
BS14603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10278321..10278459 | 515..653 | 100 | <- | Minus |
arm_X | 10278521..10278915 | 120..514 | 100 | <- | Minus |
arm_X | 10278984..10279086 | 17..119 | 100 | | Minus |
BS14603.pep Sequence
Translation from 16 to 654
> BS14603.pep
MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESDDLEPGR
TVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPY
FYEFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLD
NIEAKLHEAGVRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDE
GDALPNSKRATL*
BS14603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psf3-PC | 212 | CG2222-PC | 1..212 | 1..212 | 1119 | 100 | Plus |
Psf3-PB | 212 | CG2222-PB | 1..212 | 1..212 | 1119 | 100 | Plus |
Psf3-PA | 212 | CG2222-PA | 1..212 | 1..212 | 1119 | 100 | Plus |