Clone Sequence Records
BS14605.3prime Sequence
771 bp (712 high quality bases) assembled on 2006-10-13
> BS14605.3prime
ATGGTCTAGAAAGCTTTCAACTTGTTTTTTCCGGAGTGCTACTTCTTCTC
CTGCGCAGGAAGTTCTCGAGCGACTGAAGATCCTTTCGCTTCAGCATCTT
AATCCTGCTCACCAGTTTTTGCAAGGCTTCGATCCGTTGCTGTGCTTCCT
TGGCGGCGTCGTTGGCCTTCTTAGCGCTCTGCTTATTTCGCTCCAGATCC
TTCTGAGCCTCGCACATGCAGCTATGGAGCTCTTCCACCCGCATCCTGGC
CGCTTTCAGAAGGCTGCGCTTTTCCAGGGCCTCTTTCTGGGCACTGTCGG
CCATCCTCCGGATGTTATCGAGATTTCCGCCCATTTCCTTTAGCATACTC
TTCATAATGTTCACGGATGTGCAGAGCTTGTCACGGATCCCCTTTGCCGA
CGTCGCCGAGCACGAGCTGGCAGCAATGGCTCGTTGGATTTCCTCGATAA
CCCTGTTCGTTTCTGCCAGACTTTTGGTGTATTCATCGAGGAGCTGCTTC
TTCCCGTTGAGAGCCGCCTCCGCAGCCTTGGCCGCCTGCAACGCCCTGTC
CGCCAGCATTTCCCGTGCCCTGTAGCCCGCCATCTCCGCGGCACATGGCT
GCGCATCCTTGGCGTCCTTCGCATCCTTGGCCGCCTTCGAGGCCACCTGG
CTGGCTTTCATGCTCGTCTTGCAGGGAAGGGAGCCGGGCTTGAAACGCGG
ATCATTCCGCTGGGGAGGATGCGCGGCGGTCGACAGCAGGATGTTCGAAA
GAAGCAACATCGTAACCAGGG
BS14605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-PA | 789 | CG11698-RA | 35..789 | 771..17 | 3725 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-RA | 910 | CG11698-RA | 91..845 | 771..17 | 3745 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8312278..8313032 | 771..17 | 3745 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:55:51 has no hits.
BS14605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:15 Download gff for
BS14605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-PA | 35..789 | 17..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:19 Download gff for
BS14605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 91..851 | 8..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:50 Download gff for
BS14605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 91..851 | 8..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:50 Download gff for
BS14605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8312278..8313038 | 8..771 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:19 Download gff for
BS14605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4138000..4138760 | 8..771 | 99 | | Minus |
BS14605.5prime Sequence
762 bp (715 high quality bases) assembled on 2006-10-13
> BS14605.5prime
GAAGTTATCAGTCGACATGTACGATGCAAGATTCCCAATGCGTTGCGACT
CCCTGGTTACGATGTTGCTTCTTTCGAACATCCTGCTGTCGACCGCCGCG
CATCCTGCCCAGCGGAATGATCCGCGTTTCAAGCCCGGCTCCCTTCCCTG
CAAGACGAGCATGAAAGCCAGCCAGGTGGCCTCGAAGGCGGCCAAGGATG
CGAAGGACGCCAAGGATGCGCAGCCATGTGCCGCGGAGATGGCGGGCTAC
AGGGCACGGGAAATGCTGGCGGACAGGGCGTTGCAGGCGGCCAAGGCTGC
GGAGGCGGCTCTCAACGGGAAGAAGCAGCTCCTCGATGAATACACCAAAA
GTCTGGCAGAAACGAACAGGGTTATCGAGGAAATCCAACGAGCCATTGCT
GCCAGCTCGTGCTCGGCGACGTCGGCAAAGGGGATCCGTGACAAGCTCTG
CACATCCGTGAACATTATGAAGAGTATGCTAAAGGAAATGGGCGGAAATC
TCGATAACATCCGGAGGATGGCCGACAGTGCCCAGAAAGAGGCCCTGGAA
AAGCGCAGCCTTCTGAAAGCGGCCAGGATGCGGGTGGAAGAGCTCCATAG
CTGCATGTGCGAGGCTCAGAAGGATCTGGAGCGAAATAAGCAGAGCGCTA
AAAAGGCCAACGACGCCGCCAAGGAAGCACAGCAACGGATCGAAGCCTTG
CAAAAACTGGTGAGCAGGATTAAGATGCTGAAGCGAAAGGATCTTCAGTC
GCTCGAGAACTT
BS14605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-PA | 789 | CG11698-RA | 1..746 | 17..762 | 3680 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-RA | 910 | CG11698-RA | 57..802 | 17..762 | 3700 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8312244..8312989 | 17..762 | 3700 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:57:04 has no hits.
BS14605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:15 Download gff for
BS14605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:34 Download gff for
BS14605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 57..802 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:48 Download gff for
BS14605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 57..802 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:48 Download gff for
BS14605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8312244..8312989 | 17..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:34 Download gff for
BS14605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4137966..4138711 | 17..762 | 99 | | Plus |
BS14605.complete Sequence
821 bp assembled on 2006-11-01
GenBank Submission: FJ637724
> BS14605.complete
GAAGTTATCAGTCGACATGTACGATGCAAGATTCCCAATGCGTTGCGACT
CCCTGGTTACGATGTTGCTTCTTTCGAACATCCTGCTGTCGACCGCCGCG
CATCCTGCCCAGCGGAATGATCCGCGTTTCAAGCCCGGCTCCCTTCCCTG
CAAGACGAGCATGAAAGCCAGCCAGGTGGCCTCGAAGGCGGCCAAGGATG
CGAAGGACGCCAAGGATGCGCAGCCATGTGCCGCGGAGATGGCGGGCTAC
AGGGCACGGGAAATGCTGGCGGACAGGGCGTTGCAGGCGGCCAAGGCTGC
GGAGGCGGCTCTCAACGGGAAGAAGCAGCTCCTCGATGAATACACCAAAA
GTCTGGCAGAAACGAACAGGGTTATCGAGGAAATCCAACGAGCCATTGCT
GCCAGCTCGTGCTCGGCGACGTCGGCAAAGGGGATCCGTGACAAGCTCTG
CACATCCGTGAACATTATGAAGAGTATGCTAAAGGAAATGGGCGGAAATC
TCGATAACATCCGGAGGATGGCCGACAGTGCCCAGAAAGAGGCCCTGGAA
AAGCGCAGCCTTCTGAAAGCGGCCAGGATGCGGGTGGAAGAGCTCCATAG
CTGCATGTGCGAGGCTCAGAAGGATCTGGAGCGAAATAAGCAGAGCGCTA
AGAAGGCCAACGACGCCGCCAAGGAAGCACAGCAACGGATCGAAGCCTTG
CAAAAACTGGTGAGCAGGATTAAGATGCTGAAGCGAAAGGATCTTCAGTC
GCTCGAGAACTTCCTGCGCAGGAGAAGAAGTAGCACTCCGGAAAAAACAA
GTTGAAAGCTTTCTAGACCAT
BS14605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-RA | 789 | CG11698-PA | 1..789 | 17..805 | 3930 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-RA | 910 | CG11698-RA | 57..845 | 17..805 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8312244..8313032 | 17..805 | 3930 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:54:42 has no hits.
BS14605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:04 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:28 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 22..816 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:09 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 57..831 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:05 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 22..816 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:09 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11698-RA | 57..831 | 17..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:09 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8312244..8313018 | 17..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:09 Download gff for
BS14605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4137966..4138740 | 17..791 | 99 | | Plus |
BS14605.pep Sequence
Translation from 16 to 804
> BS14605.pep
MYDARFPMRCDSLVTMLLLSNILLSTAAHPAQRNDPRFKPGSLPCKTSMK
ASQVASKAAKDAKDAKDAQPCAAEMAGYRAREMLADRALQAAKAAEAALN
GKKQLLDEYTKSLAETNRVIEEIQRAIAASSCSATSAKGIRDKLCTSVNI
MKSMLKEMGGNLDNIRRMADSAQKEALEKRSLLKAARMRVEELHSCMCEA
QKDLERNKQSAKKANDAAKEAQQRIEALQKLVSRIKMLKRKDLQSLENFL
RRRRSSTPEKTS*
BS14605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11698-PA | 262 | CG11698-PA | 1..262 | 1..262 | 1291 | 100 | Plus |
| CG14840-PA | 300 | CG14840-PA | 87..271 | 50..234 | 320 | 38.4 | Plus |
| CG14841-PA | 274 | CG14841-PA | 85..268 | 50..233 | 300 | 37.5 | Plus |
| CG11694-PA | 261 | CG11694-PA | 50..239 | 41..224 | 278 | 36.8 | Plus |
| CG34459-PC | 305 | CG34459-PC | 114..294 | 44..224 | 263 | 37 | Plus |
