Clone Sequence Records
BS14613.complete Sequence
1499 bp assembled on 2009-12-07
GenBank Submission: KX805316
> BS14613.complete
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCA
CCTCCTTTGAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATG
CCACTGGCTGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTAT
CATCACTGCTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGA
CGATTCCTAACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTATCTGGGTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGC
TGCCCACCGCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTG
TGAACCGTGGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCGGATGTGGAGCCCGAACTAAAGGAGTTGATGCAATCTCA
GGCCGATGCCGATCGTCAGGCCACTCAGAACACCTGTTTGGAGCTGTTTA
AGCGAAACAATCTGAAGCCACTTTCCATTTCCTTGGGTCTGATGTTCTTT
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGATCCACAATTGATAGCAATCTTTCCACGATCATCGTGG
GTGTAGTTAACTTTTTTGCTACGTTTATGGGCATCATTCTGATTGATCGG
TTGGGCAGAAAGATTCTTCTGTATGTATCCGACATCGCCATGATCGTGAC
CCTGTCCATTCTGGGCGGCTTCTTCTACTGCAAGGCGCATGGTCCGGATG
TGTCCCATTTGGGTTGGTTGCCACTCACTTGCTTCGTTATCTACATTCTG
GGATTCTCCCTGGGCTTCGGACCCATTCCCTGGCTGATGATGGGTGAGAT
TCTGCCGGCCAAGATTCGAGGACCGGCTGCCTCGGTGGTCACGGCTTTCA
ACTGGTTCTGCACGTTTGTGGTAACCAAGACCTTCCAGGACCTCACGGTT
GCTATGGGCGCGCATGGAGCCTTCTGGCTATTCGGCGCCATCTGCATCGT
GGGTCTGTTCTTTGTGATTATTTTTGTGCCCGAAACGCGGGGCAAATCGT
TGGAGGAAATTGAGCGAAAGATGATGGGCCGTGTGCCCATGTCCTCGGTG
GTCAACATCAAGCCATTTCCTTTCAACATGTAAAAGCTTTCTAGACCAT
BS14613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-RA | 1467 | CG8234-PA | 1..1467 | 17..1483 | 7230 | 99.5 | Plus |
| Tret1-1-RB | 1470 | CG30035-PB | 1..1470 | 17..1483 | 5410 | 91.4 | Plus |
| Tret1-1-RA | 2574 | CG30035-PA | 1186..2574 | 98..1483 | 5110 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-RA | 1695 | CG8234-RA | 113..1580 | 17..1484 | 7235 | 99.5 | Plus |
| Tret1-1-RB | 1980 | CG30035-RB | 160..1630 | 17..1484 | 5415 | 91.4 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2782 | 98..1484 | 5115 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11676526..11677311 | 227..1012 | 3900 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11673045..11673830 | 227..1012 | 2850 | 90.8 | Plus |
| 2R | 25286936 | 2R | 11677366..11677657 | 1011..1302 | 1415 | 99 | Plus |
| 2R | 25286936 | 2R | 11673888..11674179 | 1011..1302 | 1205 | 94.2 | Plus |
| 2R | 25286936 | 2R | 11677713..11677899 | 1298..1484 | 920 | 99.5 | Plus |
| 2R | 25286936 | 2R | 11676201..11676338 | 90..227 | 630 | 97.1 | Plus |
| 2R | 25286936 | 2R | 11674243..11674432 | 1298..1484 | 585 | 88.4 | Plus |
| 2R | 25286936 | 2R | 11672706..11672843 | 90..227 | 510 | 91.3 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:54:08 has no hits.
BS14613.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:56 Download gff for
BS14613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8234-RA | 88..1552 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:57 Download gff for
BS14613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 113..1577 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:55 Download gff for
BS14613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8234-RA | 88..1552 | 17..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:32 Download gff for
BS14613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 113..1577 | 17..1481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:32 Download gff for
BS14613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11676047..11676130 | 17..100 | 100 | -> | Plus |
| 2R | 11676212..11676337 | 101..226 | 98 | -> | Plus |
| 2R | 11676526..11677311 | 227..1012 | 99 | -> | Plus |
| 2R | 11677368..11677653 | 1013..1298 | 99 | -> | Plus |
| 2R | 11677714..11677896 | 1299..1481 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:57 Download gff for
BS14613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7563552..7563635 | 17..100 | 100 | -> | Plus |
| arm_2R | 7563717..7563842 | 101..226 | 98 | -> | Plus |
| arm_2R | 7564031..7564816 | 227..1012 | 99 | -> | Plus |
| arm_2R | 7564873..7565158 | 1013..1298 | 99 | -> | Plus |
| arm_2R | 7565219..7565401 | 1299..1481 | 99 | | Plus |
BS14613.3prime Sequence
705 bp (661 high quality bases) assembled on 2006-10-13
> BS14613.3prime
ATGGTCTAGAAAGCTTTTACATGTTGAAAGGAAATGGCTTGATGTTGACC
ACCGAGGACATGGGCACACGGCCCATCATCTTTCGCTCAATTTCCTCCAA
CGATTTGCCCCGCGTTTCGGGCACAAAAATAATCACAAAGAACAGACCCA
CGATGCAGATGGCGCCGAATAGCCAGAAGGCTCCATGCGCGCCCATAGCA
ACCGTGAGGTCCTGGAAGGTCTTGGTTACCACAAACGTGCAGAACCAGTT
GAAAGCCGTGACCACCGAGGCAGCCGGTCCTCGAATCTTGGCCGGCAGAA
TCTCACCCATCATCAGCCAGGGAATGGGTCCGAAGCCCAGGGAGAATCCC
AGAATGTAGATAACGAAGCAAGTGAGTGGCAACCAACCCAAATGGGACAC
ATCCGGACCATGCGCCTTGCAGTAGAAGAAGCCGCCCAGAATGGACAGGG
TCACGATCATGGCGATGTCGGATACATACAGAAGAATCTTTCTGCCCAAC
CGATCAATCAGAATGATGCCCATAAACGTAGCAAAAAAGTTAACTACACC
CACGATGATCGTGGAAAGATTGCTATCAATTGTGGATCCCGCATCCTTGA
AGATCTGGACCGTGTAGAAGATAACCGCGTTGATACCGCTGAACTGTTGA
AAGAACATCAGACCCAAGGAAATGGAAAGTGGCTTCAGATTGTTTCGCTT
AAACA
BS14613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8234-PB | 1302 | CG8234-RB | 614..1302 | 705..17 | 3345 | 99.4 | Minus |
| CG8234-PA | 1467 | CG8234-RA | 779..1467 | 705..17 | 3345 | 99.4 | Minus |
| CG30035-PA | 2574 | CG30035-RA | 1894..2456 | 694..132 | 1965 | 93.9 | Minus |
| CG30035-PB | 1470 | CG30035-RB | 790..1352 | 694..132 | 1965 | 93.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-RA | 1695 | CG8234-RA | 891..1580 | 705..16 | 3390 | 99.4 | Minus |
| Tret1-1-RB | 1980 | CG30035-RB | 941..1630 | 702..16 | 2605 | 92.2 | Minus |
| Tret1-1-RA | 3132 | CG30035-RA | 2093..2782 | 702..16 | 2605 | 92.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11677366..11677657 | 489..198 | 1415 | 99 | Minus |
| 2R | 25286936 | 2R | 11673888..11674179 | 489..198 | 1205 | 94.2 | Minus |
| 2R | 25286936 | 2R | 11677094..11677311 | 705..488 | 1075 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11677713..11677899 | 202..16 | 920 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11673616..11673830 | 702..488 | 805 | 91.6 | Minus |
| 2R | 25286936 | 2R | 11674243..11674432 | 202..16 | 585 | 88.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:50:11 has no hits.
BS14613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:21 Download gff for
BS14613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8234-PA | 780..1467 | 17..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:53:42 Download gff for
BS14613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 892..1580 | 16..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:17:26 Download gff for
BS14613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 892..1580 | 16..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:17:26 Download gff for
BS14613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11677095..11677311 | 488..704 | 99 | -> | Minus |
| 2R | 11677368..11677653 | 202..487 | 99 | -> | Minus |
| 2R | 11677714..11677899 | 16..201 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:53:42 Download gff for
BS14613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7564600..7564816 | 488..704 | 99 | -> | Minus |
| arm_2R | 7564873..7565158 | 202..487 | 99 | -> | Minus |
| arm_2R | 7565219..7565404 | 16..201 | 99 | | Minus |
BS14613.5prime Sequence
720 bp (719 high quality bases) assembled on 2006-10-13
> BS14613.5prime
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGCCGATGGGCTCAAGGCCAATTTTACCTTTTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGTGCTCCTTGGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCACTTGTGTCGATGACCGATCGAACCATCA
CCTCCTTTGAGGTCACAAAAGATGCTGGTTCCTGGGTTGGTGGCATCATG
CCACTGGCTGCATTAGCAGGTGGCATAACAGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAGCACCATCCTGGCCACTGCGGTGCCCTTCATCGTAT
CATCACTGCTGATTGCGTGTGCTGTGAATGTGATCATGATTCTGTGCGGA
CGATTCCTAACTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTATCTGGGTGAGACTTTGCAGCCGGAAGTGCGGGGCACTTTGGGTTTGC
TGCCCACCGCTCTTGGTAACATAGGCATCCTGGTTTGCTATGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTGATGATCATTATCCCCGAAACTCCGCGCTGGTTTG
TGAACCGTGGTCAGGAAGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCGGATGTGGA
BS14613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8234-PA | 1467 | CG8234-RA | 1..704 | 17..720 | 3445 | 99.5 | Plus |
| CG8234-PB | 1302 | CG8234-RB | 1..539 | 182..720 | 2645 | 99.6 | Plus |
| CG30035-PB | 1470 | CG30035-RB | 1..366 | 17..382 | 1130 | 92.3 | Plus |
| CG30035-PA | 2574 | CG30035-RA | 1186..1470 | 98..382 | 900 | 92.6 | Plus |
| CG30035-PB | 1470 | CG30035-RB | 526..704 | 542..720 | 645 | 94.4 | Plus |
| CG30035-PA | 2574 | CG30035-RA | 1630..1808 | 542..720 | 645 | 94.4 | Plus |
| CG30035-PB | 1470 | CG30035-RB | 374..516 | 390..532 | 440 | 92.3 | Plus |
| CG30035-PA | 2574 | CG30035-RA | 1478..1620 | 390..532 | 440 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-RA | 1695 | CG8234-RA | 113..816 | 17..720 | 3475 | 99.6 | Plus |
| Tret1-1-RB | 1980 | CG30035-RB | 160..863 | 17..720 | 2665 | 91.9 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2015 | 98..720 | 2365 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11676526..11677019 | 227..720 | 2455 | 99.8 | Plus |
| 2R | 25286936 | 2R | 11673045..11673538 | 227..720 | 1870 | 91.9 | Plus |
| 2R | 25286936 | 2R | 11676201..11676338 | 90..227 | 630 | 97.1 | Plus |
| 2R | 25286936 | 2R | 11672706..11672843 | 90..227 | 510 | 91.3 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:32:04 has no hits.
BS14613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:22 Download gff for
BS14613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8234-PA | 1..703 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:09:56 Download gff for
BS14613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 113..815 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:19:15 Download gff for
BS14613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-2-RA | 113..815 | 17..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:19:15 Download gff for
BS14613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11676047..11676130 | 17..100 | 100 | -> | Plus |
| 2R | 11676212..11676337 | 101..226 | 98 | -> | Plus |
| 2R | 11676526..11677018 | 227..719 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:09:56 Download gff for
BS14613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7563552..7563635 | 17..100 | 100 | -> | Plus |
| arm_2R | 7563717..7563842 | 101..226 | 98 | -> | Plus |
| arm_2R | 7564031..7564523 | 227..719 | 99 | | Plus |
BS14613.pep Sequence
Translation from 16 to 1482
> BS14613.pep
MKILMRADTHVSFSVPADGLKANFTFSQVLAALSVSLCSLVVGFVSAYTS
PALVSMTDRTITSFEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRS
TILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGET
LQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLIL
MIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQADADR
QATQNTCLELFKRNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS
TIDSNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILG
GFFYCKAHGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKI
RGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFV
IIFVPETRGKSLEEIERKMMGRVPMSSVVNIKPFPFNM*
BS14613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-2-PA | 488 | CG8234-PA | 1..488 | 1..488 | 2496 | 100 | Plus |
| Tret1-1-PB | 489 | CG30035-PB | 1..489 | 1..488 | 2222 | 88.8 | Plus |
| Tret1-1-PA | 857 | CG30035-PA | 392..857 | 24..488 | 2130 | 88.6 | Plus |
| CG10960-PA | 471 | CG10960-PA | 15..459 | 28..471 | 864 | 41.2 | Plus |
| CG10960-PC | 471 | CG10960-PC | 15..459 | 28..471 | 864 | 41.2 | Plus |
