Clone Sequence Records
BS14615.complete Sequence
716 bp assembled on 2010-02-09
GenBank Submission: KX801963
> BS14615.complete
GAAGTTATCAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGT
GCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACT
GTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAA
TGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACA
TCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCAC
TTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGG
ACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGA
CCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGC
TCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCT
GGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACG
TGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTG
GCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCG
CAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCG
ACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAGAAGCAGTAA
AAGCTTTCTAGACCAT
BS14615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 684 | CG1469-PD | 1..684 | 17..700 | 3405 | 99.9 | Plus |
Fer2LCH-RC | 684 | CG1469-PC | 1..684 | 17..700 | 3405 | 99.9 | Plus |
Fer2LCH-RB | 684 | CG1469-PB | 1..684 | 17..700 | 3405 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 1091 | CG1469-RD | 80..769 | 11..700 | 3435 | 99.9 | Plus |
Fer2LCH-RC | 1078 | CG1469-RC | 67..756 | 11..700 | 3435 | 99.9 | Plus |
Fer2LCH-RB | 1443 | CG1469-RB | 432..1121 | 11..700 | 3435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30389696..30390262 | 134..700 | 2820 | 99.8 | Plus |
3R | 32079331 | 3R | 30389205..30389328 | 11..134 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:29:31 has no hits.
BS14615.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:39 Download gff for
BS14615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 73..754 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:16 Download gff for
BS14615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 438..1119 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:03 Download gff for
BS14615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 73..754 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:08 Download gff for
BS14615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 438..1119 | 17..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:08 Download gff for
BS14615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30389211..30389328 | 17..134 | 100 | -> | Plus |
3R | 30389697..30390260 | 135..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:16 Download gff for
BS14615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26214933..26215050 | 17..134 | 100 | -> | Plus |
arm_3R | 26215419..26215982 | 135..698 | 99 | | Plus |
BS14615.3prime Sequence
555 bp (482 high quality bases) assembled on 2006-10-13
> BS14615.3prime
ATGGTCTAGAAAGCTTTTACTGCTTCTGCAGATACTCGTCGAACAGGTAG
ACGGACAGGGATGGGTCGGGGACCTTCATCAGCTTGGCGAGGTCGTTGGC
ATAACCGGACAGCTTGCGCACGCTCTCGGCCTGCTTGCCCAGGAAGTTCT
CCTCGAAGTAGTGGGCCAGCTCGGGATCCCTCTCGGCGTCGGTGGCGTGG
GTGGCACGGGAGTGCACGTGAGTGGCTCCGGTGGCCAGCTGCTTCTCGGT
GTCCAGAGCCAGAGCCAGGGAGTGCAGTTCGTCGACCTCAAGAGTGCCGC
GCTTGGTGCTCACGGAGCCGGAAGACTCGTGGCGGGTGTTGAAGTCAACG
ATTCCTCCGCGACGGGTCACCTGCTTGATCAGGGCAATGCTGTCCTCGAA
GGAGCGGTCCGAGAGTCCCTGGTACAGCTTCTGGAAGCCGGGGCGGTTCT
TCTGGTAGGAGTTGAAGTGGGTGGCCAGCAGGAGGTAGTCGTACGACTTG
GCCAAGTTGGCGTTAGATGTAGGACTGGATCTCGGGCTCAATATTGGTCA
ATGCC
BS14615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1469-PA | 684 | Fer2LCH-RA | 148..684 | 555..17 | 2590 | 99.4 | Minus |
CG1469-PB | 684 | Fer2LCH-RB | 148..684 | 555..17 | 2590 | 99.4 | Minus |
CG1469-PC | 684 | Fer2LCH-RC | 148..684 | 555..17 | 2590 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RE | 1118 | CG1469-RE | 260..796 | 555..17 | 2630 | 99.4 | Minus |
Fer2LCH-RD | 1091 | CG1469-RD | 233..769 | 555..17 | 2630 | 99.4 | Minus |
Fer2LCH-RC | 1078 | CG1469-RC | 220..756 | 555..17 | 2630 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30389726..30390262 | 555..17 | 2580 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:23:58 has no hits.
BS14615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:23 Download gff for
BS14615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1469-PC | 148..684 | 17..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:11:14 Download gff for
BS14615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 220..756 | 17..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:05:10 Download gff for
BS14615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RC | 220..756 | 17..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:05:10 Download gff for
BS14615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30389726..30390262 | 17..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:11:14 Download gff for
BS14615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26215448..26215984 | 17..555 | 99 | | Minus |
BS14615.5prime Sequence
677 bp (676 high quality bases) assembled on 2006-10-13
> BS14615.5prime
GAAGTTATCAGTCGACATGAAATTTTTCGTTGCACTCGCTCTCTTTGCGT
GCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGCCAGAACACT
GTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTCCATTTGTAA
TGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCCAGTCCTACA
TCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTGGCCACCCAC
TTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCTGTACCAGGG
ACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCAAGCAGGTGA
CCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAGTCTTCCGGC
TCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACTGCACTCCCT
GGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAGCCACTCACG
TGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGATCCCGAGCTG
GCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGAGAGCGTGCG
CAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGAAGGTCCCCG
ACCCCATCCCCTGTCCGTCTACCTGTT
BS14615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1469-PA | 684 | Fer2LCH-RA | 1..659 | 17..677 | 3200 | 99.5 | Plus |
CG1469-PB | 684 | Fer2LCH-RB | 1..659 | 17..677 | 3200 | 99.5 | Plus |
CG1469-PC | 684 | Fer2LCH-RC | 1..659 | 17..677 | 3200 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-RD | 1091 | CG1469-RD | 80..744 | 11..677 | 3270 | 99.6 | Plus |
Fer2LCH-RC | 1078 | CG1469-RC | 67..731 | 11..677 | 3270 | 99.6 | Plus |
Fer2LCH-RB | 1443 | CG1469-RB | 432..1096 | 11..677 | 3270 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30389696..30390237 | 134..677 | 2610 | 99.1 | Plus |
3R | 32079331 | 3R | 30389205..30389328 | 11..134 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:01:16 has no hits.
BS14615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:23 Download gff for
BS14615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1469-PC | 1..659 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:04 Download gff for
BS14615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 423..1096 | 1..677 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:13 Download gff for
BS14615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer2LCH-RB | 423..1096 | 1..677 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:13 Download gff for
BS14615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30389194..30389328 | 1..134 | 96 | -> | Plus |
3R | 30389697..30390237 | 135..677 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:04 Download gff for
BS14615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26214916..26215050 | 1..134 | 96 | -> | Plus |
arm_3R | 26215419..26215959 | 135..677 | 99 | | Plus |
BS14615.pep Sequence
Translation from 16 to 699
> BS14615.pep
MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG
IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS
FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD
TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY
ANDLAKLMKVPDPSLSVYLFDEYLQKQ*
BS14615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer2LCH-PD | 227 | CG1469-PD | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PC | 227 | CG1469-PC | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PB | 227 | CG1469-PB | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PA | 227 | CG1469-PA | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PE | 236 | CG1469-PE | 1..236 | 1..227 | 1141 | 96.2 | Plus |