Clone BS14616 Report

Search the DGRC for BS14616

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS14616.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS14616.3prime Sequence

880 bp (739 high quality bases) assembled on 2006-10-13

> BS14616.3prime
ATGGTCTAGAAAGCTTCTATTGTTTTTTTTCATGAATACCGCATCCGAAA
CAAGTAAATGGCTGACGCAGGGCCAGCATCCGATCGCGATTCATTCGAAA
GATATGATCCTGCATCAACTGGTCAGTGTGGGAGCGTATTTGATTACGAT
CCTCGAGGACATGACGCAACTGAATCAAAGCGTTATCACCATCGATGCCG
CACAATTCCTCCTCGTCGGCGTGCAGACTCATATCGGCGATGCCCAAACG
GGCCATGGCCATGGCAATATTATCAATGTCGCTATCAACATGAAAGCACG
ATAGGTATTTCTGATCAGCCTCAGTTGAGCATTTATCCAACTCCTGCGAC
TGATCGCCCACTGTACACATTTCATTCCTTTCTCGAGTTTCTGTGGCTTC
TTCAGCAGTGGCCGGTTTCTTAACCACCCTCACAATGCATCCATCATCAA
AGGCCTCGTCGTAGTTTTGCACACTGTATGCCCCCTTTGGTGACTTCGGC
TCCTTCGTTTCCATTACCATAAAGCCCTTGGTGATGGAAATATCAAATTT
AGGTTTGACACCTGCTAGCGTTGCCTTTGACTCAGCATCATCGCTGGCTT
TCTTTTCGATCTCAAATTGAATTTTCTTTATCATATCGACGGCCGGCTCT
TCGCGACAAATCTTGCCAACGAATAGCGGTGGTGTGATGGAACCATTATA
CTGTGGCTGTGGTGGACCGAAACGTCCGATGTAGTCCATGAACCACAGTT
CGGATAGAGTTCCCGGCTTGATGACGCAACCGGCTTCGAATCCTTTGGGC
ATGAAACGTTTGGGCAGAAAAATTGGTCGATTGACGCCCTCACAAATGGG
AAAGACTCCGATGGGCAGCTCGAACTTGGG

BS14616.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-PA 1398 CG15333-RA 535..1398 880..17 4320 100 Minus
CG15332-PB 1674 CG15332-RB 805..923 856..738 320 90.7 Minus
CG15332-PA 1716 CG15332-RA 847..965 856..738 320 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-RA 1823 CG15333-RA 847..1710 880..17 4320 100 Minus
CG15332-RA 2003 CG15332-RA 1018..1160 880..738 475 88.8 Minus
CG15332-RA 2003 CG15332-RA 1374..1482 533..425 230 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8019636..8020499 17..880 4320 100 Plus
X 23542271 X 7954695..7954837 738..880 475 88.8 Plus
X 23542271 X 7954373..7954481 425..533 230 80.7 Plus
Blast to na_te.dros performed on 2015-02-02 18:18:00 has no hits.

BS14616.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:24 Download gff for BS14616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15333-PA 535..1398 17..880 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:07 Download gff for BS14616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 847..1710 17..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:39 Download gff for BS14616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 847..1710 17..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:39 Download gff for BS14616.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8019636..8020499 17..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:07 Download gff for BS14616.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7913669..7914532 17..880 100   Plus

BS14616.5prime Sequence

834 bp (778 high quality bases) assembled on 2006-10-13

> BS14616.5prime
GAAGTTATCAGTCGACATGGACAAGATTGTCTTTCTGCCAACGTCCATGT
TGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGCCGGGTATCCTTACG
CGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGTCACAAGGGTCAAAC
GCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCAACCGCCGACAAGGG
TCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAACCAATTCAGGACACA
TTGATGAATTGGTTGCATGCCAGCAATGATCTTATAAATGGGGCACAGCC
AAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATCGATGGTCTTCAATT
TGCCAATACCACCGAGTCCACCATCGCCCTATTCATATGGCCGTATCCCG
TTGCAGTGCAACATTTATACGCCGGATCTGTCCAATGTTCTGTTGCTTAT
GTCGCACCAACGCGATCTTACGGTGGCGATACTGTCCACCGTTAACAATC
CGCATGTTCCATCTGTGGCATTCGCCACCATGGGCGATGATGCGGAGTGC
CCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATTTGTGAGGGCGTCAA
TCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAAAGGATTCGAAGCCG
GTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGTGGTTCATGGACTAC
ATCGGACGTTTCGGTCCACCACAGCCACAGTATAATGGTTCCATCACACC
ACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGGCCGTCGATATGA
TAAAGAAAATTCAATTTGAGATCGAAAAGAAAGC

BS14616.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-PA 1398 CG15333-RA 1..818 17..834 4090 100 Plus
CG15332-PA 1716 CG15332-RA 754..965 482..693 560 90.5 Plus
CG15332-PB 1674 CG15332-RB 712..923 482..693 560 90.5 Plus
CG15332-PA 1716 CG15332-RA 319..363 47..91 150 93.3 Plus
CG15332-PB 1674 CG15332-RB 277..321 47..91 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-RA 1823 CG15333-RA 313..1130 17..834 4090 100 Plus
CG15332-RA 2003 CG15332-RA 833..1160 366..693 905 85.4 Plus
CG15332-RA 2003 CG15332-RA 490..643 23..176 265 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8020216..8021033 834..17 4090 100 Minus
X 23542271 X 7954695..7955022 693..366 905 85.1 Minus
X 23542271 X 7955212..7955365 176..23 260 77.9 Minus
Blast to na_te.dros performed on 2015-02-02 18:19:42 has no hits.

BS14616.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:24 Download gff for BS14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15333-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:13 Download gff for BS14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 309..1130 12..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:48 Download gff for BS14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 309..1130 12..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:48 Download gff for BS14616.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8020216..8021037 12..834 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:13 Download gff for BS14616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7914249..7915070 12..834 99   Minus

BS14616.complete Sequence

1430 bp assembled on 2006-11-01

> BS14616.complete
GAAGTTATCAGTCGACATGGACAAGATTGTCTTTCTGCCAACGTCCATGT
TGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGCCGGGTATCCTTACG
CGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGTCACAAGGGTCAAAC
GCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCAACCGCCGACAAGGG
TCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAACCAATTCAGGACACA
TTGATGAATTGGTTGCATGCCAGCAATGATCTTATAAATGGGGCACAGCC
AAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATCGATGGTCTTCAATT
TGCCAATACCACCGAGTCCACCATCGCCCTATTCATATGGCCGTATCCCG
TTGCAGTGCAACATTTATACGCCGGATCTGTCCAATGTTCTGTTGCTTAT
GTCGCACCAACGCGATCTTACGGTGGCGATACTGTCCACCGTTAACAATC
CGCATGTTCCATCTGTGGCATTCGCCACCATGGGCGATGATGCGGAGTGC
CCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATTTGTGAGGGCGTCAA
TCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAAAGGATTCGAAGCCG
GTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGTGGTTCATGGACTAC
ATCGGACGTTTCGGTCCACCACAGCCACAGTATAATGGTTCCATCACACC
ACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGGCCGTCGATATGA
TAAAGAAAATTCAATTTGAGATCGAAAAGAAAGCCAGCGATGATGCTGAG
TCAAAGGCAACGCTAGCAGGTGTCAAACCTAAATTTGATATTTCCATCAC
CAAGGGCTTTATGGTAATGGAAACGAAGGAGCCGAAGTCACCAAAGGGGG
CATACAGTGTGCAAAACTACGACGAGGCCTTTGATGATGGATGCATTGTG
AGGGTGGTTAAGAAACCGGCCACTGCTGAAGAAGCCACAGAAACTCGAGA
AAGGAATGAAATGTGTACAGTGGGCGATCAGTCGCAGGAGTTGGATAAAT
GCTCAACTGAGGCTGATCAGAAATACCTATCGTGCTTTCATGTTGATAGC
GACATTGATAATATTGCCATGGCCATGGCCCGTTTGGGCATCGCCGATAT
GAGTCTGCACGCCGACGAGGAGGAATTGTGCGGCATCGATGGTGATAACG
CTTTGATTCAGTTGCGTCATGTCCTCGAGGATCGTAATCAAATACGCTCC
CACACTGACCAGTTGATGCAGGATCATATCTTTCGAATGAATCGCGATCG
GATGCTGGCCCTGCGTCAGCCATTTACTTGTTTCGGATGCGGTATTCATG
AAAAAAAACAATAGAAGCTTTCTAGACCAT

BS14616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-RA 1629 CG15333-PA 232..1629 17..1414 6990 100 Plus
CG15332-RA 1716 CG15332-PA 638..965 366..693 905 85.1 Plus
CG15332-RA 1716 CG15332-PA 295..448 23..176 260 77.9 Plus
CG15332-RA 1716 CG15332-PA 1179..1287 898..1006 230 80.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-RA 1823 CG15333-RA 313..1710 17..1414 6990 100 Plus
CG15332-RA 2003 CG15332-RA 833..1160 366..693 905 85.1 Plus
CG15332-RA 2003 CG15332-RA 490..643 23..176 260 77.9 Plus
CG15332-RA 2003 CG15332-RA 1374..1482 898..1006 230 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8019636..8021033 1414..17 6990 100 Minus
X 23542271 X 7954695..7955022 693..366 905 85.1 Minus
X 23542271 X 7955212..7955365 176..23 260 77.9 Minus
X 23542271 X 7954373..7954481 1006..898 230 80.7 Minus
Blast to na_te.dros performed on 2014-11-28 00:36:54 has no hits.

BS14616.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:00 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 228..1629 12..1414 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:03 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 228..1629 12..1414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:50 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 313..1696 17..1400 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:00 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 228..1629 12..1414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:31 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 313..1696 17..1400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:31 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
X 8019650..8021033 17..1400 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:50 Download gff for BS14616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7913683..7915066 17..1400 100   Minus

BS14616.pep Sequence

Translation from 16 to 1413

> BS14616.pep
MDKIVFLPTSMLPMGFEAGGVFGPGILTRRSYPIDLKAAGHKGQTPPLFV
GLRMEVQPPTRVESLLKKDGESQPIQDTLMNWLHASNDLINGAQPKGQEL
RDEFSLSMVFNLPIPPSPPSPYSYGRIPLQCNIYTPDLSNVLLLMSHQRD
LTVAILSTVNNPHVPSVAFATMGDDAECPKFELPIGVFPICEGVNRPIFL
PKRFMPKGFEAGCVIKPGTLSELWFMDYIGRFGPPQPQYNGSITPPLFVG
KICREEPAVDMIKKIQFEIEKKASDDAESKATLAGVKPKFDISITKGFMV
METKEPKSPKGAYSVQNYDEAFDDGCIVRVVKKPATAEEATETRERNEMC
TVGDQSQELDKCSTEADQKYLSCFHVDSDIDNIAMAMARLGIADMSLHAD
EEELCGIDGDNALIQLRHVLEDRNQIRSHTDQLMQDHIFRMNRDRMLALR
QPFTCFGCGIHEKKQ*

BS14616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-PA 542 CG15333-PA 78..542 1..465 2464 100 Plus
CG15332-PA 571 CG15332-PA 97..570 1..461 1167 51.1 Plus