Clone Sequence Records
BS14616.3prime Sequence
880 bp (739 high quality bases) assembled on 2006-10-13
> BS14616.3prime
ATGGTCTAGAAAGCTTCTATTGTTTTTTTTCATGAATACCGCATCCGAAA
CAAGTAAATGGCTGACGCAGGGCCAGCATCCGATCGCGATTCATTCGAAA
GATATGATCCTGCATCAACTGGTCAGTGTGGGAGCGTATTTGATTACGAT
CCTCGAGGACATGACGCAACTGAATCAAAGCGTTATCACCATCGATGCCG
CACAATTCCTCCTCGTCGGCGTGCAGACTCATATCGGCGATGCCCAAACG
GGCCATGGCCATGGCAATATTATCAATGTCGCTATCAACATGAAAGCACG
ATAGGTATTTCTGATCAGCCTCAGTTGAGCATTTATCCAACTCCTGCGAC
TGATCGCCCACTGTACACATTTCATTCCTTTCTCGAGTTTCTGTGGCTTC
TTCAGCAGTGGCCGGTTTCTTAACCACCCTCACAATGCATCCATCATCAA
AGGCCTCGTCGTAGTTTTGCACACTGTATGCCCCCTTTGGTGACTTCGGC
TCCTTCGTTTCCATTACCATAAAGCCCTTGGTGATGGAAATATCAAATTT
AGGTTTGACACCTGCTAGCGTTGCCTTTGACTCAGCATCATCGCTGGCTT
TCTTTTCGATCTCAAATTGAATTTTCTTTATCATATCGACGGCCGGCTCT
TCGCGACAAATCTTGCCAACGAATAGCGGTGGTGTGATGGAACCATTATA
CTGTGGCTGTGGTGGACCGAAACGTCCGATGTAGTCCATGAACCACAGTT
CGGATAGAGTTCCCGGCTTGATGACGCAACCGGCTTCGAATCCTTTGGGC
ATGAAACGTTTGGGCAGAAAAATTGGTCGATTGACGCCCTCACAAATGGG
AAAGACTCCGATGGGCAGCTCGAACTTGGG
BS14616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-PA | 1398 | CG15333-RA | 535..1398 | 880..17 | 4320 | 100 | Minus |
CG15332-PB | 1674 | CG15332-RB | 805..923 | 856..738 | 320 | 90.7 | Minus |
CG15332-PA | 1716 | CG15332-RA | 847..965 | 856..738 | 320 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1823 | CG15333-RA | 847..1710 | 880..17 | 4320 | 100 | Minus |
CG15332-RA | 2003 | CG15332-RA | 1018..1160 | 880..738 | 475 | 88.8 | Minus |
CG15332-RA | 2003 | CG15332-RA | 1374..1482 | 533..425 | 230 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8019636..8020499 | 17..880 | 4320 | 100 | Plus |
X | 23542271 | X | 7954695..7954837 | 738..880 | 475 | 88.8 | Plus |
X | 23542271 | X | 7954373..7954481 | 425..533 | 230 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:18:00 has no hits.
BS14616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:24 Download gff for
BS14616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-PA | 535..1398 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:07 Download gff for
BS14616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 847..1710 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:39 Download gff for
BS14616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 847..1710 | 17..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:39 Download gff for
BS14616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8019636..8020499 | 17..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:07 Download gff for
BS14616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7913669..7914532 | 17..880 | 100 | | Plus |
BS14616.5prime Sequence
834 bp (778 high quality bases) assembled on 2006-10-13
> BS14616.5prime
GAAGTTATCAGTCGACATGGACAAGATTGTCTTTCTGCCAACGTCCATGT
TGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGCCGGGTATCCTTACG
CGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGTCACAAGGGTCAAAC
GCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCAACCGCCGACAAGGG
TCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAACCAATTCAGGACACA
TTGATGAATTGGTTGCATGCCAGCAATGATCTTATAAATGGGGCACAGCC
AAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATCGATGGTCTTCAATT
TGCCAATACCACCGAGTCCACCATCGCCCTATTCATATGGCCGTATCCCG
TTGCAGTGCAACATTTATACGCCGGATCTGTCCAATGTTCTGTTGCTTAT
GTCGCACCAACGCGATCTTACGGTGGCGATACTGTCCACCGTTAACAATC
CGCATGTTCCATCTGTGGCATTCGCCACCATGGGCGATGATGCGGAGTGC
CCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATTTGTGAGGGCGTCAA
TCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAAAGGATTCGAAGCCG
GTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGTGGTTCATGGACTAC
ATCGGACGTTTCGGTCCACCACAGCCACAGTATAATGGTTCCATCACACC
ACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGGCCGTCGATATGA
TAAAGAAAATTCAATTTGAGATCGAAAAGAAAGC
BS14616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-PA | 1398 | CG15333-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG15332-PA | 1716 | CG15332-RA | 754..965 | 482..693 | 560 | 90.5 | Plus |
CG15332-PB | 1674 | CG15332-RB | 712..923 | 482..693 | 560 | 90.5 | Plus |
CG15332-PA | 1716 | CG15332-RA | 319..363 | 47..91 | 150 | 93.3 | Plus |
CG15332-PB | 1674 | CG15332-RB | 277..321 | 47..91 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1823 | CG15333-RA | 313..1130 | 17..834 | 4090 | 100 | Plus |
CG15332-RA | 2003 | CG15332-RA | 833..1160 | 366..693 | 905 | 85.4 | Plus |
CG15332-RA | 2003 | CG15332-RA | 490..643 | 23..176 | 265 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8020216..8021033 | 834..17 | 4090 | 100 | Minus |
X | 23542271 | X | 7954695..7955022 | 693..366 | 905 | 85.1 | Minus |
X | 23542271 | X | 7955212..7955365 | 176..23 | 260 | 77.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:19:42 has no hits.
BS14616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:24 Download gff for
BS14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:13 Download gff for
BS14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 309..1130 | 12..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:48 Download gff for
BS14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 309..1130 | 12..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:48 Download gff for
BS14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8020216..8021037 | 12..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:13 Download gff for
BS14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7914249..7915070 | 12..834 | 99 | | Minus |
BS14616.complete Sequence
1430 bp assembled on 2006-11-01
> BS14616.complete
GAAGTTATCAGTCGACATGGACAAGATTGTCTTTCTGCCAACGTCCATGT
TGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGCCGGGTATCCTTACG
CGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGTCACAAGGGTCAAAC
GCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCAACCGCCGACAAGGG
TCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAACCAATTCAGGACACA
TTGATGAATTGGTTGCATGCCAGCAATGATCTTATAAATGGGGCACAGCC
AAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATCGATGGTCTTCAATT
TGCCAATACCACCGAGTCCACCATCGCCCTATTCATATGGCCGTATCCCG
TTGCAGTGCAACATTTATACGCCGGATCTGTCCAATGTTCTGTTGCTTAT
GTCGCACCAACGCGATCTTACGGTGGCGATACTGTCCACCGTTAACAATC
CGCATGTTCCATCTGTGGCATTCGCCACCATGGGCGATGATGCGGAGTGC
CCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATTTGTGAGGGCGTCAA
TCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAAAGGATTCGAAGCCG
GTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGTGGTTCATGGACTAC
ATCGGACGTTTCGGTCCACCACAGCCACAGTATAATGGTTCCATCACACC
ACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGGCCGTCGATATGA
TAAAGAAAATTCAATTTGAGATCGAAAAGAAAGCCAGCGATGATGCTGAG
TCAAAGGCAACGCTAGCAGGTGTCAAACCTAAATTTGATATTTCCATCAC
CAAGGGCTTTATGGTAATGGAAACGAAGGAGCCGAAGTCACCAAAGGGGG
CATACAGTGTGCAAAACTACGACGAGGCCTTTGATGATGGATGCATTGTG
AGGGTGGTTAAGAAACCGGCCACTGCTGAAGAAGCCACAGAAACTCGAGA
AAGGAATGAAATGTGTACAGTGGGCGATCAGTCGCAGGAGTTGGATAAAT
GCTCAACTGAGGCTGATCAGAAATACCTATCGTGCTTTCATGTTGATAGC
GACATTGATAATATTGCCATGGCCATGGCCCGTTTGGGCATCGCCGATAT
GAGTCTGCACGCCGACGAGGAGGAATTGTGCGGCATCGATGGTGATAACG
CTTTGATTCAGTTGCGTCATGTCCTCGAGGATCGTAATCAAATACGCTCC
CACACTGACCAGTTGATGCAGGATCATATCTTTCGAATGAATCGCGATCG
GATGCTGGCCCTGCGTCAGCCATTTACTTGTTTCGGATGCGGTATTCATG
AAAAAAAACAATAGAAGCTTTCTAGACCAT
BS14616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1629 | CG15333-PA | 232..1629 | 17..1414 | 6990 | 100 | Plus |
CG15332-RA | 1716 | CG15332-PA | 638..965 | 366..693 | 905 | 85.1 | Plus |
CG15332-RA | 1716 | CG15332-PA | 295..448 | 23..176 | 260 | 77.9 | Plus |
CG15332-RA | 1716 | CG15332-PA | 1179..1287 | 898..1006 | 230 | 80.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1823 | CG15333-RA | 313..1710 | 17..1414 | 6990 | 100 | Plus |
CG15332-RA | 2003 | CG15332-RA | 833..1160 | 366..693 | 905 | 85.1 | Plus |
CG15332-RA | 2003 | CG15332-RA | 490..643 | 23..176 | 260 | 77.9 | Plus |
CG15332-RA | 2003 | CG15332-RA | 1374..1482 | 898..1006 | 230 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8019636..8021033 | 1414..17 | 6990 | 100 | Minus |
X | 23542271 | X | 7954695..7955022 | 693..366 | 905 | 85.1 | Minus |
X | 23542271 | X | 7955212..7955365 | 176..23 | 260 | 77.9 | Minus |
X | 23542271 | X | 7954373..7954481 | 1006..898 | 230 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:54 has no hits.
BS14616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:00 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 228..1629 | 12..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:03 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 228..1629 | 12..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:50 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 313..1696 | 17..1400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:00 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 228..1629 | 12..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:31 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 313..1696 | 17..1400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:31 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8019650..8021033 | 17..1400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:50 Download gff for
BS14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7913683..7915066 | 17..1400 | 100 | | Minus |
BS14616.pep Sequence
Translation from 16 to 1413
> BS14616.pep
MDKIVFLPTSMLPMGFEAGGVFGPGILTRRSYPIDLKAAGHKGQTPPLFV
GLRMEVQPPTRVESLLKKDGESQPIQDTLMNWLHASNDLINGAQPKGQEL
RDEFSLSMVFNLPIPPSPPSPYSYGRIPLQCNIYTPDLSNVLLLMSHQRD
LTVAILSTVNNPHVPSVAFATMGDDAECPKFELPIGVFPICEGVNRPIFL
PKRFMPKGFEAGCVIKPGTLSELWFMDYIGRFGPPQPQYNGSITPPLFVG
KICREEPAVDMIKKIQFEIEKKASDDAESKATLAGVKPKFDISITKGFMV
METKEPKSPKGAYSVQNYDEAFDDGCIVRVVKKPATAEEATETRERNEMC
TVGDQSQELDKCSTEADQKYLSCFHVDSDIDNIAMAMARLGIADMSLHAD
EEELCGIDGDNALIQLRHVLEDRNQIRSHTDQLMQDHIFRMNRDRMLALR
QPFTCFGCGIHEKKQ*
BS14616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-PA | 542 | CG15333-PA | 78..542 | 1..465 | 2464 | 100 | Plus |
CG15332-PA | 571 | CG15332-PA | 97..570 | 1..461 | 1167 | 51.1 | Plus |