Clone Sequence Records
BS14617.complete Sequence
962 bp assembled on 2010-02-09
GenBank Submission: KX801955
> BS14617.complete
GAAGTTATCAGTCGACATGAACGTACCACTCGTAGCCCTCACCAAGGATC
CCAAGATGAAGAAGTCACAGAAGAAGTCATCAATGGTGGCCGTTCCCAAG
ATGTCGCAGAAACCACAGAAGGCAGCACGTCTATTTCAGCCAAAGGTGGA
GAACAAGATTACTTTGACCACTCCATTGACTGCACCCAAAAAGGAACGGG
TGAAGGACATCAAGGTGGCAGATCCTCTTGAGAAGGAAGTAGAGTCAGTA
TTCGTTACAGTACCGAAAAACAAACTTTGCAAAACCAGACGCAATCGTCC
TGGTGACCGACTCTTTGATCGCCGTTCCGGATCGAAACGCACTGGCGTAA
AGGCGGTGGAAAAACGCAATGGAGCCGGGGCCCACAACTGGGGATCCATC
CAGCAGGAGATCGACTTGCGTCAGAGGACCAATTTGCGCACCTTCGAAGG
GATGAAGTTACCAAAGGTATCGAGTTTCGTCTACGAGTACGATTCATCGG
AGGAGACCGAACAATATACACTCGACGAGTGGCGTGCCATGCAGGCGCAG
AAAAAGCAGGTTTTGAATAAGTTTATAATGTCTGATTTCGGTACAAAGAA
AGAAGTAACAGGGGGTTCTGAAGAAACTGTACGAGCCGAGGGATCAGGAG
ACACAGACGACACCAAAGGATTGGACAAAACAGGAGGAACTGAACAAACA
GGAAATACTGAAACAGGGGAGAGGTCTGCTGGATCTGGAGAAACAGAAAC
AGCCGCAGCATCTGGAGTACCTGACGCATCTGGAGGATCTGGAGGAACTG
AGGGATCTGGAGGATTAGGAGGATCAGGAGAGCTGGAAGACGATGGCGAA
GAATTAACCGCTGACCGCCCGTTGTACGTTGTTGATATCCTGTTAAATTT
CAACACTGATCAAGGTGTTATTCCTTATCGCTTAAAATTCATTTAAAAGC
TTTCTAGACCAT
BS14617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 930 | CG15031-PA | 1..930 | 17..946 | 4635 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 1055 | CG15031-RA | 77..1006 | 17..946 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15243908..15244837 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:25:44 has no hits.
BS14617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:09 Download gff for
BS14617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 77..1004 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:09 Download gff for
BS14617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 77..1004 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:28 Download gff for
BS14617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 77..1004 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:33 Download gff for
BS14617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 77..1004 | 17..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:33 Download gff for
BS14617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15243910..15244837 | 17..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:09 Download gff for
BS14617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15137943..15138870 | 17..944 | 99 | | Minus |
BS14617.3prime Sequence
790 bp (703 high quality bases) assembled on 2006-10-13
> BS14617.3prime
ATGGTCTAGAAAGCTTTTAAATGAATTTTAAGCGATAAGGAATAACACCT
TGATCAGTGTTGAAATTTAACAGGATATCAACAACGTACAACGGGCGGTC
AGCGGTTAATTCTTCGCCATCGTCTTCCAGCTCTCCTGATCCTCCTAATC
CTCCAGATCCCTCAGTTCCTCCAGATCCTCCAGATGCGTCAGGTACTCCA
GATGCTGCGGCTGTTTCTGTTTCTCCAGATCCAGCAGACCTCTCCCCTGT
TTCAGTATTTCCTGTTTGTTCAGTTCCTCCTGTTTTGTCCAATCCTTTGG
TGTCGTCTGTGTCTCCTGATCCCTCGGCTCGTACAGTTTCTTCAGAACCC
CCTGTTACTTCTTTCTTTGTACCGAAATCAGACATTATAAACTTATTCAA
AACCTGCTTTTTCTGCGCCTGCATGGCACGCCACTCGTCGAGTGTATATT
GTTCGGTCTCCTCCGATGAATCGTACTCGTAGACGAAACTCGATACCTTT
GGTAACTTCATCCCTTCGAAGGTGCGCAAATTGGTCCTCTGACGCAAGTC
GATCTCCTGCTGGATGGATCCCCAGTTGTGGGCCCCGGCTCCATTGCGTT
TTTCCACCGCCTTTACGCCAGTGCGTTTCGATCCGGAACGGCGATCAAAG
AGTCGGTCACCAGGACGATTGCGTCTGGTTTTGCAAAGTTTGTTTTTCGG
TACTGTAACGAATACTGACTCTACTTTCTTCTCAAGAAGATCTGCCACCT
TGATGTCCTTCACCCGTTCCTTTTTGGGTGCAGTCAATGG
BS14617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15031-PA | 930 | CG15031-RA | 157..930 | 790..17 | 3795 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 1055 | CG15031-RA | 233..1006 | 790..17 | 3825 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15243908..15244681 | 17..790 | 3825 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:32:19 has no hits.
BS14617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:25 Download gff for
BS14617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15031-PA | 157..930 | 17..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:00 Download gff for
BS14617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 233..1013 | 11..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:21:59 Download gff for
BS14617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 233..1013 | 11..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:21:59 Download gff for
BS14617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15243901..15244681 | 11..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:00 Download gff for
BS14617.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15137934..15138714 | 11..790 | 99 | | Plus |
BS14617.pep Sequence
Translation from 16 to 945
> BS14617.pep
MNVPLVALTKDPKMKKSQKKSSMVAVPKMSQKPQKAARLFQPKVENKITL
TTPLTAPKKERVKDIKVADPLEKEVESVFVTVPKNKLCKTRRNRPGDRLF
DRRSGSKRTGVKAVEKRNGAGAHNWGSIQQEIDLRQRTNLRTFEGMKLPK
VSSFVYEYDSSEETEQYTLDEWRAMQAQKKQVLNKFIMSDFGTKKEVTGG
SEETVRAEGSGDTDDTKGLDKTGGTEQTGNTETGERSAGSGETETAAASG
VPDASGGSGGTEGSGGLGGSGELEDDGEELTADRPLYVVDILLNFNTDQG
VIPYRLKFI*
BS14617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-PA | 309 | CG15031-PA | 1..309 | 1..309 | 1582 | 100 | Plus |
| vig-PB | 490 | CG4170-PB | 207..389 | 91..269 | 192 | 32.3 | Plus |
| vig-PA | 490 | CG4170-PA | 207..389 | 91..269 | 192 | 32.3 | Plus |
| vig-PC | 490 | CG4170-PC | 207..389 | 91..269 | 192 | 32.3 | Plus |
| vig-PD | 490 | CG4170-PD | 207..389 | 91..269 | 192 | 32.3 | Plus |
