Clone Sequence Records
BS14619.3prime Sequence
814 bp (751 high quality bases) assembled on 2006-10-13
> BS14619.3prime
ATGGTCTAGAAAGCTTCTAATCATCGAAAAAATCGATGGAATCATCCTCA
ATCTCCACCAGCTCAAAATCGGAGGTGCTGCCAAACATCCACCAGTGGCT
GAGAATGTTCCGGATGAGCATAAATCGTGTGGTGACAAACTCAAAGAAGT
GGAAGAAAAGTGCACTGGAGGTCAGAAGGGCACAAGAGGCGACAAACACC
TCCTGGACGGTTAACTGATCGGTGCTGCCCTGATTCATATTATCCATGCA
CTGCAGCACCTGCTGCAAGATGATATGGGCTAGTGGCATTAGCGAGGCGC
TAAATAGCAGATGCTTCACAATCAGGCCGCAACAACGGCCGCAGCAGAAG
GTTCGGATCATTTGCTTCAGACTGGCCCGCTCCTCCGCGATATTAAAGAC
CGCATTGCAGATCTCACAGCGATTATCCCGCCTGTGCATGATCCAGCGCT
TCAAGCACACGCTGCCCTTGCAGTTGCAGGGACATTTGATGATCTCCATG
TCGTTGCGGTTCCAGCGGCAGATGCGGCACGAGTTGCCGCTTTCGTTCGC
CGAATGGAGGCTCTCCTGTAGGTGACTTCGCAGCATCCGTTGTCGTGCTG
AGGATATTTCCAGTGCTGCCGTGGATGCAGTGGGCGTGCCATGTGCCGAT
GCTACGATTTGCGACGAGCAGATTGCTTCAGCTGCCGCTGACTGAGGCGG
CTGAGCGCCGAGTGGCATTGTGGCATTGCCGGCTGACTCCAGACCGTTAA
TCAGACGAAGGGCAGCGGCCTCGGAAAGAACGTGTTGATGATGCGACATG
TCCGACTGATAACT
BS14619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-PB | 783 | CG17717-RB | 1..783 | 799..17 | 3840 | 99.6 | Minus |
CG17717-PA | 801 | CG17717-RA | 360..801 | 458..17 | 2185 | 99.7 | Minus |
CG17717-PA | 801 | CG17717-RA | 1..342 | 799..458 | 1660 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 1074 | CG17717-RB | 202..984 | 799..17 | 3870 | 99.6 | Minus |
CG17717-RA | 1092 | CG17717-RA | 202..1002 | 799..17 | 3680 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6589491..6589832 | 799..458 | 1680 | 99.4 | Minus |
X | 23542271 | X | 6590311..6590556 | 262..17 | 1215 | 99.6 | Minus |
X | 23542271 | X | 6590050..6590251 | 458..257 | 1010 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 17:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 423..505 | 325..403 | 108 | 62.7 | Plus |
BS14619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:25 Download gff for
BS14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-PB | 1..783 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:53 Download gff for
BS14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..984 | 17..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:52 Download gff for
BS14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..984 | 17..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:52 Download gff for
BS14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6589485..6589832 | 458..807 | 98 | -> | Minus |
X | 6590051..6590248 | 260..457 | 100 | -> | Minus |
X | 6590314..6590556 | 17..259 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:53 Download gff for
BS14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6483518..6483865 | 458..807 | 98 | -> | Minus |
arm_X | 6484084..6484281 | 260..457 | 100 | -> | Minus |
arm_X | 6484347..6484589 | 17..259 | 99 | | Minus |
BS14619.5prime Sequence
813 bp (714 high quality bases) assembled on 2006-10-13
> BS14619.5prime
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCAATGATTAGA
AGCTTTCTAGACC
BS14619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-PB | 783 | CG17717-RB | 1..783 | 17..799 | 3815 | 99.4 | Plus |
CG17717-PA | 801 | CG17717-RA | 360..801 | 358..799 | 2160 | 99.5 | Plus |
CG17717-PA | 801 | CG17717-RA | 1..342 | 17..358 | 1660 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 1074 | CG17717-RB | 202..984 | 17..799 | 3855 | 99.5 | Plus |
CG17717-RA | 1092 | CG17717-RA | 202..1002 | 17..799 | 3665 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6589491..6589832 | 17..358 | 1680 | 99.4 | Plus |
X | 23542271 | X | 6590311..6590556 | 554..799 | 1200 | 99.2 | Plus |
X | 23542271 | X | 6590050..6590251 | 358..559 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 423..505 | 491..413 | 108 | 62.7 | Minus |
BS14619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:25 Download gff for
BS14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-PB | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:33 Download gff for
BS14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..984 | 10..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:43 Download gff for
BS14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..984 | 10..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:43 Download gff for
BS14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6590051..6590248 | 359..556 | 100 | -> | Plus |
X | 6590314..6590556 | 557..799 | 99 | | Plus |
X | 6589485..6589832 | 10..358 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:33 Download gff for
BS14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6483518..6483865 | 10..358 | 98 | -> | Plus |
arm_X | 6484084..6484281 | 359..556 | 100 | -> | Plus |
arm_X | 6484347..6484589 | 557..799 | 99 | | Plus |
BS14619.complete Sequence
815 bp assembled on 2006-11-01
GenBank Submission: FJ637726
> BS14619.complete
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCGATGATTAGA
AGCTTTCTAGACCAT
BS14619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 783 | CG17717-PB | 1..783 | 17..799 | 3870 | 99.6 | Plus |
CG17717-RA | 801 | CG17717-PA | 1..801 | 17..799 | 3655 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-RB | 1074 | CG17717-RB | 202..984 | 17..799 | 3870 | 99.6 | Plus |
CG17717-RA | 1092 | CG17717-RA | 202..1002 | 17..799 | 3655 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6589491..6589832 | 17..358 | 1680 | 99.4 | Plus |
X | 23542271 | X | 6590311..6590556 | 554..799 | 1215 | 99.6 | Plus |
X | 23542271 | X | 6590050..6590251 | 358..559 | 1010 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 423..505 | 491..413 | 108 | 62.7 | Minus |
BS14619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:01 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:05 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..984 | 10..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:19 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 202..984 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:01 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 196..984 | 10..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:51 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17717-RB | 202..984 | 17..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:51 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6589491..6589832 | 17..358 | 99 | -> | Plus |
X | 6590051..6590248 | 359..556 | 100 | -> | Plus |
X | 6590314..6590556 | 557..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:19 Download gff for
BS14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6483524..6483865 | 17..358 | 99 | -> | Plus |
arm_X | 6484084..6484281 | 359..556 | 100 | -> | Plus |
arm_X | 6484347..6484589 | 557..799 | 99 | | Plus |
BS14619.pep Sequence
Translation from 16 to 798
> BS14619.pep
MSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAEAICSSQIVA
SAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSCRICRWNRND
MEIIKCPCNCKGSVCLKRWIMHRRDNRCEICNAVFNIAEERASLKQMIRT
FCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCMDNMNQGSTDQLTVQE
VFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHWWMFGSTSDFELVEI
EDDSIDFFDD*
BS14619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17717-PB | 260 | CG17717-PB | 1..260 | 1..260 | 1370 | 100 | Plus |
CG17717-PA | 266 | CG17717-PA | 1..266 | 1..260 | 1353 | 97.7 | Plus |