Clone BS14619 Report

Search the DGRC for BS14619

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG17717-RB
Protein status:BS14619.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14619.3prime Sequence

814 bp (751 high quality bases) assembled on 2006-10-13

> BS14619.3prime
ATGGTCTAGAAAGCTTCTAATCATCGAAAAAATCGATGGAATCATCCTCA
ATCTCCACCAGCTCAAAATCGGAGGTGCTGCCAAACATCCACCAGTGGCT
GAGAATGTTCCGGATGAGCATAAATCGTGTGGTGACAAACTCAAAGAAGT
GGAAGAAAAGTGCACTGGAGGTCAGAAGGGCACAAGAGGCGACAAACACC
TCCTGGACGGTTAACTGATCGGTGCTGCCCTGATTCATATTATCCATGCA
CTGCAGCACCTGCTGCAAGATGATATGGGCTAGTGGCATTAGCGAGGCGC
TAAATAGCAGATGCTTCACAATCAGGCCGCAACAACGGCCGCAGCAGAAG
GTTCGGATCATTTGCTTCAGACTGGCCCGCTCCTCCGCGATATTAAAGAC
CGCATTGCAGATCTCACAGCGATTATCCCGCCTGTGCATGATCCAGCGCT
TCAAGCACACGCTGCCCTTGCAGTTGCAGGGACATTTGATGATCTCCATG
TCGTTGCGGTTCCAGCGGCAGATGCGGCACGAGTTGCCGCTTTCGTTCGC
CGAATGGAGGCTCTCCTGTAGGTGACTTCGCAGCATCCGTTGTCGTGCTG
AGGATATTTCCAGTGCTGCCGTGGATGCAGTGGGCGTGCCATGTGCCGAT
GCTACGATTTGCGACGAGCAGATTGCTTCAGCTGCCGCTGACTGAGGCGG
CTGAGCGCCGAGTGGCATTGTGGCATTGCCGGCTGACTCCAGACCGTTAA
TCAGACGAAGGGCAGCGGCCTCGGAAAGAACGTGTTGATGATGCGACATG
TCCGACTGATAACT

BS14619.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 783 CG17717-RB 1..783 799..17 3840 99.6 Minus
CG17717-PA 801 CG17717-RA 360..801 458..17 2185 99.7 Minus
CG17717-PA 801 CG17717-RA 1..342 799..458 1660 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1074 CG17717-RB 202..984 799..17 3870 99.6 Minus
CG17717-RA 1092 CG17717-RA 202..1002 799..17 3680 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589491..6589832 799..458 1680 99.4 Minus
X 23542271 X 6590311..6590556 262..17 1215 99.6 Minus
X 23542271 X 6590050..6590251 458..257 1010 100 Minus
Blast to na_te.dros performed 2015-02-12 17:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 325..403 108 62.7 Plus

BS14619.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:25 Download gff for BS14619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-PB 1..783 17..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:53 Download gff for BS14619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..984 17..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:52 Download gff for BS14619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..984 17..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:52 Download gff for BS14619.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6589485..6589832 458..807 98 -> Minus
X 6590051..6590248 260..457 100 -> Minus
X 6590314..6590556 17..259 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:53 Download gff for BS14619.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483518..6483865 458..807 98 -> Minus
arm_X 6484084..6484281 260..457 100 -> Minus
arm_X 6484347..6484589 17..259 99   Minus

BS14619.5prime Sequence

813 bp (714 high quality bases) assembled on 2006-10-13

> BS14619.5prime
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCAATGATTAGA
AGCTTTCTAGACC

BS14619.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 783 CG17717-RB 1..783 17..799 3815 99.4 Plus
CG17717-PA 801 CG17717-RA 360..801 358..799 2160 99.5 Plus
CG17717-PA 801 CG17717-RA 1..342 17..358 1660 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1074 CG17717-RB 202..984 17..799 3855 99.5 Plus
CG17717-RA 1092 CG17717-RA 202..1002 17..799 3665 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589491..6589832 17..358 1680 99.4 Plus
X 23542271 X 6590311..6590556 554..799 1200 99.2 Plus
X 23542271 X 6590050..6590251 358..559 1010 100 Plus
Blast to na_te.dros performed 2015-02-10 16:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 491..413 108 62.7 Minus

BS14619.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:25 Download gff for BS14619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-PB 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:33 Download gff for BS14619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..984 10..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:43 Download gff for BS14619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..984 10..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:43 Download gff for BS14619.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6590051..6590248 359..556 100 -> Plus
X 6590314..6590556 557..799 99   Plus
X 6589485..6589832 10..358 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:33 Download gff for BS14619.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483518..6483865 10..358 98 -> Plus
arm_X 6484084..6484281 359..556 100 -> Plus
arm_X 6484347..6484589 557..799 99   Plus

BS14619.complete Sequence

815 bp assembled on 2006-11-01

GenBank Submission: FJ637726

> BS14619.complete
GAAGTTATCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCG
CTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATG
CCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTC
GTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAG
CACTGGAAATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAG
GAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCG
CTGGAACCGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGG
GCAGCGTGTGCTTGAAGCGCTGGATCATGCACAGGCGGGATAATCGCTGT
GAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAA
GCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGA
AGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCCATATCATCTTG
CAGCAGGTGCTGCAGTGCATGGATAATATGAATCAGGGCAGCACCGATCA
GTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCA
GTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACACGATTTATGCTC
ATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGCAGCACCTCCGATTT
TGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTTTCGATGATTAGA
AGCTTTCTAGACCAT

BS14619.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 783 CG17717-PB 1..783 17..799 3870 99.6 Plus
CG17717-RA 801 CG17717-PA 1..801 17..799 3655 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1074 CG17717-RB 202..984 17..799 3870 99.6 Plus
CG17717-RA 1092 CG17717-RA 202..1002 17..799 3655 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589491..6589832 17..358 1680 99.4 Plus
X 23542271 X 6590311..6590556 554..799 1215 99.6 Plus
X 23542271 X 6590050..6590251 358..559 1010 100 Plus
Blast to na_te.dros performed 2014-11-27 20:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 423..505 491..413 108 62.7 Minus

BS14619.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:01 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:05 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..984 10..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:19 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 202..984 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:01 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 196..984 10..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:51 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 202..984 17..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:51 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589491..6589832 17..358 99 -> Plus
X 6590051..6590248 359..556 100 -> Plus
X 6590314..6590556 557..799 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:19 Download gff for BS14619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483524..6483865 17..358 99 -> Plus
arm_X 6484084..6484281 359..556 100 -> Plus
arm_X 6484347..6484589 557..799 99   Plus

BS14619.pep Sequence

Translation from 16 to 798

> BS14619.pep
MSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAEAICSSQIVA
SAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSCRICRWNRND
MEIIKCPCNCKGSVCLKRWIMHRRDNRCEICNAVFNIAEERASLKQMIRT
FCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCMDNMNQGSTDQLTVQE
VFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHWWMFGSTSDFELVEI
EDDSIDFFDD*

BS14619.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 260 CG17717-PB 1..260 1..260 1370 100 Plus
CG17717-PA 266 CG17717-PA 1..266 1..260 1353 97.7 Plus