Clone Sequence Records
BS14621.complete Sequence
1859 bp assembled on 2009-12-07
GenBank Submission: KX805953
> BS14621.complete
GAAGTTATCAGTCGACATGGCAGATGCGTGGGACATAAAATCACTCAAGA
CAAAGCGGAACACGCTCCGCGAGAAGCTGGAAAAGCGCAAGAAGGAGCGC
ATTGAGATTCTCTCGGACATTCAGGAGGATCTGACGAATCCCAAAAAGGA
ACTCGTTGAGGCTGACTTGGAAGTACAGAAGGAGGTGCTGCAGGCCCTCA
GTTCCTGCTCCCTGGCCCTGCCCATTGTCTCCACACAGGTGGTGGAAAAG
ATTGCCGGCAGCAGCCTGGAGATGGTGAACTTTATTCTAGGCAAACTGGC
CAACCAGGGTGCAATTGTGATCCGGAACGTGACCATCGGCACCGAGGCCG
GCTGCGAAATCATCTCTGTGCAGCCCAAGGAGCTGAAGGAGATCCTGGAA
GACACCAACGATACGTGTCAGCAAAAGGAGGAGGAGGCCAAGAGAAAGTT
GGAAGTCGACGATGTTGATCAGCCACAGGAGAAGACAATAAAACTGGAGT
CCACTGTAGCGCGGAAAGAGTCCACAAGCCTGGATGCTCCGGACGACATT
ATGATGCTGCTATCCATGCCTTCCACCCGCGAAAAACAGAGTAAGCAGGT
GGGCGAGGAGATTCTTGAGCTGCTTACTAAGCCTACGGCCAAAGAGCGAT
CCGTGGCTGAGAAGTTTAAGTCCCACGGCGGAGCGCAGGTCATGGAGTTT
TGCTCCCACGGCACAAAAGTCGAGTGCCTGAAGGCTCAACAAGCCACCGC
CGAGATGGCGGCCAAAAAGAAACAAGAAAGAAGAGACGAAAAGGAGCTTC
GCCCGGATGTTGATGCGGGCGAAAACGTCACCGGTAAGGTACCCAAGACA
GAATCGGCAGCCGAGGATGGAGAAATCATTGCGGAGGTTATAAACAATTG
CGAAGCCGAGTCGCAGGAATCCACCGATGGCAGCGATACCTGCAGCAGTG
AGACAACAGACAAGTGCACCAAACTGCATTTCAAAAAGATCATCCAGGCT
CACACGGACGAATCTCTGGGGGACTGCAGTTTCCTAAACACCTGCTTCCA
CATGGCCACCTGCAAGTACGTGCACTATGAGGTGGACACCCTGCCGCATA
TAAACACAAACAAGCCCACGGATGTGAAAACCAAATTGAGCCTCAAGCGC
AGCGTAGACTCCAGTTGCACGCTCTATCCGCCGCAATGGATTCAATGCGA
CCTACGCTTCTTGGACATGACGGTCCTGGGAAAGTTCGCTGTGGTGATGG
CCGATCCTCCCTGGGATATCCACATGGAATTGCCCTACGGCACAATGTCG
GACGATGAAATGAGAGCACTGGGCGTGCCGGCACTTCAGGATGACGGCTT
GATCTTTCTGTGGGTCACTGGACGAGCCATGGAACTTGGCCGCGACTGCC
TCAAGTTGTGGGGCTATGAGCGCGTGGACGAACTCATCTGGGTAAAGACC
AACCAACTGCAGCGAATTATTCGCACTGGGCGCACTGGTCATTGGCTAAA
CCACGGCAAGGAGCACTGTTTGGTGGGCATGAAAGGCAATCCCACAAACC
TGAACCGCGGACTCGATTGCGATGTGATCGTTGCGGAGGTGCGGGCCACC
TCTCACAAGCCGGATGAGATTTATGGTATTATCGAGCGTCTAAGCCCGGG
TACTCGCAAGATCGAGCTCTTTGGGCGTCCGCACAACATCCAACCGAACT
GGATAACCCTGGGAAACCAACTGGATGGCATTCGACTGGTGGATCCGGAG
CTAATTACGCAGTTCCAGAAGCGTTATCCAGATGGTAACTGCATGTCGCC
AGCTTCTGCCAATGCGGCGTCGATCAATGGAATACAAAAGTAGAAGCTTT
CTAGACCAT
BS14621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1827 | CG5933-PA | 1..1827 | 17..1843 | 9120 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 41..1867 | 17..1843 | 9120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24032760..24034153 | 450..1843 | 6955 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24032397..24032691 | 155..449 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 24032197..24032340 | 17..160 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:57:45 has no hits.
BS14621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:37 Download gff for
BS14621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-RA | 6..1832 | 17..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:17 Download gff for
BS14621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..1867 | 17..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:59 Download gff for
BS14621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-RA | 6..1832 | 17..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:42 Download gff for
BS14621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..1867 | 17..1843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:42 Download gff for
BS14621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24032197..24032335 | 17..155 | 100 | -> | Plus |
| 3R | 24032398..24032691 | 156..449 | 100 | -> | Plus |
| 3R | 24032760..24034153 | 450..1843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:17 Download gff for
BS14621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19857919..19858057 | 17..155 | 100 | -> | Plus |
| arm_3R | 19858120..19858413 | 156..449 | 100 | -> | Plus |
| arm_3R | 19858482..19859875 | 450..1843 | 99 | | Plus |
BS14621.3prime Sequence
752 bp (691 high quality bases) assembled on 2006-10-13
> BS14621.3prime
ATGGTCTAGAAAGCTTCTACTTTTGTATTCCATTGATCGACGCCGCATTG
GCAGAAGCTGGCGACATGCAGTTACCATCTGGATAACGCTTCTGGAACTG
CGTAATTAGCTCCGGATCCACCAGTCGAATGCCATCCAGTTGGTTTCCCA
GGGTTATCCAGTTCGGTTGGATGTTGTGCGGACGCCCAAAGAGCTCGATC
TTGCGAGTACCCGGGCTTAGACGCTCGATAATACCATAAATCTCATCCGG
CTTGTGAGAGGTGGCCCGCACCTCCGCAACGATCACATCGCAATCGAGTC
CGCGGTTCAGGTTTGTGGGATTGCCTTTCATGCCCACCAAACAGTGCTCC
TTGCCGTGGTTTAGCCAATGACCAGTGCGCCCAGTGCGAATAATTCGCTG
CAGTTGGTTGGTCTTTACCCAGATGAGTTCGTCCACGCGCTCATAGCCCC
ACAACTTGAGGCAGTCGCGGCCAAGTTCCATGGCTCGTCCAGTGACCCAC
AGAAAGATCAAGCCGTCATCCTGAAGTGCCGGCACGCCCAGTGCTCTCAT
TTCATCGTCCGACATTGTGCCGTAGGGCAATTCCATGTGGATATCCCAGG
GAGGATCGGCCATCACCACAGCGAACTTTCCCAGGACCGTCATGTCCAAG
AAGCGTAGGTCGCATTGAATCCATTGCGGCGGATAGAGCGTGCAACTGGA
GTCTACGCTGCGCTTGAGGCTCAATTTGGTTTTCACATCCGTGGGCTTGT
TT
BS14621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5933-PA | 1827 | CG5933-RA | 1092..1827 | 752..17 | 3680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 1132..1867 | 752..17 | 3680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24033418..24034153 | 752..17 | 3680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:01:24 has no hits.
BS14621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:27 Download gff for
BS14621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-PA | 1092..1827 | 17..752 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:06 Download gff for
BS14621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 1132..1871 | 11..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:32 Download gff for
BS14621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 1132..1871 | 11..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:32 Download gff for
BS14621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24033418..24034157 | 11..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:06 Download gff for
BS14621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19859140..19859879 | 11..752 | 99 | | Minus |
BS14621.5prime Sequence
696 bp (695 high quality bases) assembled on 2006-10-13
> BS14621.5prime
GAAGTTATCAGTCGACATGGCAGATGCGTGGGACATAAAATCACTCAAGA
CAAAGCGGAACACGCTCCGCGAGAAGCTGGAAAAGCGCAAGAAGGAGCGC
ATTGAGATTCTCTCGGACATTCAGGAGGATCTGACGAATCCCAAAAAGGA
ACTCGTTGAGGCTGACTTGGAAGTACAGAAGGAGGTGCTGCAGGCCCTCA
GTTCCTGCTCCCTGGCCCTGCCCATTGTCTCCACACAGGTGGTGGAAAAG
ATTGCCGGCAGCAGCCTGGAGATGGTGAACTTTATTCTAGGCAAACTGGC
CAACCAGGGTGCAATTGTGATCCGGAACGTGACCATCGGCACCGAGGCCG
GCTGCGAAATCATCTCTGTGCAGCCCAAGGAGCTGAAGGAGATCCTGGAA
GACACCAACGATACGTGTCAGCAAAAGGAGGAGGAGGCCAAGAGAAAGTT
GGAAGTCGACGATGTTGATCAGCCACAGGAGAAGACAATAAAACTGGAGT
CCACTGTAGCGCGGAAAGAGTCCACAAGCCTGGATGCTCCGGACGACATT
ATGATGCTGCTATCCATGCCTTCCACCCGCGAAAAACAGAGTAAGCAGGT
GGGCGAGGAGATTCTTTGAGCTGCTTACTAAGCCTACGGCCAAAGAGCGA
TCCGTGGCTGAGAAGTTTAAGTCCCACCGGCGGAGCGCAAGTCATG
BS14621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5933-PA | 1827 | CG5933-RA | 1..678 | 17..696 | 3270 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 41..718 | 17..696 | 3320 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24032397..24032691 | 155..449 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 24032760..24033004 | 450..696 | 1105 | 98.4 | Plus |
| 3R | 32079331 | 3R | 24032197..24032340 | 17..160 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:16 has no hits.
BS14621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:27 Download gff for
BS14621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-PA | 1..678 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:42:34 Download gff for
BS14621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..718 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:23 Download gff for
BS14621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..718 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:23 Download gff for
BS14621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24032197..24032335 | 17..155 | 100 | -> | Plus |
| 3R | 24032398..24032691 | 156..449 | 100 | -> | Plus |
| 3R | 24032760..24033004 | 450..696 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:42:34 Download gff for
BS14621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19857919..19858057 | 17..155 | 100 | -> | Plus |
| arm_3R | 19858120..19858413 | 156..449 | 100 | -> | Plus |
| arm_3R | 19858482..19858726 | 450..696 | 98 | | Plus |
BS14621.pep Sequence
Translation from 16 to 1842
> BS14621.pep
MADAWDIKSLKTKRNTLREKLEKRKKERIEILSDIQEDLTNPKKELVEAD
LEVQKEVLQALSSCSLALPIVSTQVVEKIAGSSLEMVNFILGKLANQGAI
VIRNVTIGTEAGCEIISVQPKELKEILEDTNDTCQQKEEEAKRKLEVDDV
DQPQEKTIKLESTVARKESTSLDAPDDIMMLLSMPSTREKQSKQVGEEIL
ELLTKPTAKERSVAEKFKSHGGAQVMEFCSHGTKVECLKAQQATAEMAAK
KKQERRDEKELRPDVDAGENVTGKVPKTESAAEDGEIIAEVINNCEAESQ
ESTDGSDTCSSETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATCK
YVHYEVDTLPHINTNKPTDVKTKLSLKRSVDSSCTLYPPQWIQCDLRFLD
MTVLGKFAVVMADPPWDIHMELPYGTMSDDEMRALGVPALQDDGLIFLWV
TGRAMELGRDCLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGKEH
CLVGMKGNPTNLNRGLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIE
LFGRPHNIQPNWITLGNQLDGIRLVDPELITQFQKRYPDGNCMSPASANA
ASINGIQK*
BS14621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-PA | 608 | CG5933-PA | 1..608 | 1..608 | 3162 | 100 | Plus |
| CG7818-PA | 397 | CG7818-PA | 135..365 | 385..594 | 253 | 29.3 | Plus |
