Clone BS14623 Report

Search the DGRC for BS14623

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptHsp83-RA
Protein status:BS14623.pep: full length peptide match
Sequenced Size:2186

Clone Sequence Records

BS14623.3prime Sequence

733 bp (694 high quality bases) assembled on 2006-10-13

> BS14623.3prime
ATGGTCTAGAAAGCTTTTAATCGACCTCCTCCATGTGGGAAGCGTCCTCG
GTGTCCTCAACCAGCGAGGGGGCATCTCCGGCGCTCTGGGCATCGTCGGT
AGTCATAGGCTCGTCCTCGTCGATTCCCAAGCCCAGCTTGATCATGCGGT
AGATGCGGCTGGCGTGCACCTGGGGGCTGTCCAGCGAGAATCCAGAGGAC
AGCAGAGAGGTCTCGAACAGCAGGATGACCAGATCCTTGACGGCCTTATC
GTTCTTGTCGGCATCGGCCTTCTGGCGGAGAGTCTCCACAATTGGGTGAT
CGGGGTTGATCTCCAGCTGCTTCTTGCCGGCCATGTAGCCCATTGTGGCG
GTATCACGCAGAGCCTGGGCCTTCATGATGCGCTCCATGTTAGCGGACCA
GCCGAACTGCGAAGTGACAATGCAGCAGGGCGAATCCACCAGGCGGTTGG
ACACCACCACCTTCTCGACCTTGTTGTCCAGGATGGACTTCATCAGCTTG
CACAGGCTCTCGAACTTGGCCTTGTCCTCCTCGCGCTTCTTCTTCTCGCT
CTCATCCTCAGGCAGCTCCAGACCCTCCTTGGTGACAGAGACCAGCTGCT
TGCCCTTGTACTCCTTCAAGTGCTGGATGACATACTCATCGATGGGCTCG
GTCATGTAAACCACCTCGAAGCCACGGGCCTTGACGCGCTCCACGAAAGC
AGAGTTGCTGACCTGGTCCTTGGACTCGCCAGT

BS14623.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1242-PA 2154 Hsp83-RA 1438..2154 733..17 3510 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp83-RB 2960 CG1242-RB 1837..2553 733..17 3540 99.6 Minus
Hsp83-RA 2713 CG1242-RA 1590..2306 733..17 3540 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3195936..3196652 733..17 3540 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:48:45 has no hits.

BS14623.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:28 Download gff for BS14623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1242-PA 1438..2154 17..733 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:22 Download gff for BS14623.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 1590..2308 13..733 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:57 Download gff for BS14623.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 1590..2308 13..733 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:57 Download gff for BS14623.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3195936..3196654 13..733 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:22 Download gff for BS14623.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3195936..3196654 13..733 99   Minus

BS14623.5prime Sequence

630 bp (629 high quality bases) assembled on 2006-10-13

> BS14623.5prime
GAAGTTATCAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGG
CTGAGATTGCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAAC
AAGGAGATTTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGA
CAAGATCCGCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCA
AGGAGCTGTACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACC
ATCATTGATACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTT
GGGAACCATCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGG
CTGGTGCCGACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCC
GCCTACCTGGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGA
CGAGCAGTACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTG
CCGACAACTCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATT
CAGGAGGACCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGT
TAACAAGCACTCCCAGTTCATTGGCTACCC

BS14623.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1242-PA 2154 Hsp83-RA 1..614 17..630 2995 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp83-RB 2960 CG1242-RB 400..1013 17..630 3025 99.5 Plus
Hsp83-RA 2713 CG1242-RA 153..766 17..630 3025 99.5 Plus
Gp93-RA 2841 CG5520-RA 434..496 98..160 195 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3194499..3195112 17..630 3025 99.5 Plus
Y 3667352 Y 1959696..1959750 71..17 275 100 Minus
Y 3667352 Y 1974666..1974720 71..17 275 100 Minus
Y 3667352 Y 1945186..1945239 71..18 270 100 Minus
Y 3667352 Y 1967790..1967843 71..18 270 100 Minus
U 3151297 U 1163528..1163581 18..71 270 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:06:38 has no hits.

BS14623.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:29 Download gff for BS14623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1242-PA 1..614 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:10:33 Download gff for BS14623.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 145..766 9..630 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:13 Download gff for BS14623.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 145..766 9..630 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:13 Download gff for BS14623.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3194499..3195112 17..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:10:33 Download gff for BS14623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3194499..3195112 17..630 99   Plus

BS14623.complete Sequence

2186 bp assembled on 2009-12-07

GenBank Submission: KX800702

> BS14623.complete
GAAGTTATCAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGG
CTGAGATTGCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAAC
AAGGAGATTTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGA
CAAGATCCGCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCA
AGGAGCTGTACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACC
ATCATTGATACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTT
GGGAACCATCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGG
CTGGTGCCGACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCC
GCCTACCTGGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGA
CGAGCAGTACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTG
CCGACAACTCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATC
AAGGAGGACCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGT
TAACAAGCACTCCCAGTTCATTGGCTACCCCATCAAGCTGCTCGTAGAGA
AGGAGCGCGAGAAGGAGGTCAGCGACGATGAGGCTGATGATGAGAAGAAG
GAAGGTGATGAGAAGAAGGAGATGGAGACTGATGAGCCCAAAATCGAGGA
TGTTGGCGAGGATGAGGATGCCGACAAGAAGGACAAGGATGCCAAGAAGA
AGAAGACCATCAAGGAGAAGTACACTGAGGATGAGGAGCTGAACAAGACC
AAGCCCATCTGGACCCGCAATCCCGATGATATCTCCCAGGAGGAGTACGG
CGAGTTCTACAAATCCCTGACCAACGACTGGGAGGATCATCTGGCCGTCA
AGCACTTCTCCGTGGAGGGTCAGCTGGAGTTCCGTGCTCTGCTCTTCATT
CCCCGTCGCACGCCCTTCGATCTCTTTGAGAACCAGAAGAAGCGCAACAA
CATCAAGCTGTACGTGCGTCGTGTCTTCATCATGGACAACTGCGAGGACC
TCATTCCAGAGTACTTGAACTTCATGAAGGGTGTGGTCGACTCCGAGGAT
CTGCCCCTCAACATCTCACGTGAGATGCTGCAGCAGAACAAGGTCCTAAA
GGTGATCCGCAAGAACCTGGTCAAGAAGACCATGGAGCTGATTGAGGAGC
TCACCGAGGACAAGGAGAACTACAAGAAGTTCTATGACCAGTTCAGCAAG
AACCTGAAGCTGGGTGTGCACGAGGACAGCAACAACCGTGCCAAGTTGGC
CGACTTCCTTCGCTTCCACACCTCTGCCTCCGGCGACGATTTCTGCTCCC
TGGCCGACTACGTGTCGCGCATGAAGGATAACCAGAAGCACGTGTACTTC
ATCACTGGCGAGTCCAAGGACCAGGTCAGCAACTCTGCCTTCGTGGAGCG
CGTCAAGGCCCGTGGCTTCGAGGTGGTCTACATGACCGAGCCCATCGATG
AGTATGTCATCCAGCACTTGAAGGAGTACAAGGGCAAGCAGCTGGTCTCT
GTCACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGAGCGAGAAGAAGAA
GCGCGAGGAGGACAAGGCCAAGTTCGAGAGCCTGTGCAAGCTGATGAAGT
CCATCCTGGACAACAAGGTCGAGAAGGTGGTGGTGTCCAACCGCCTGGTG
GATTCGCCCTGCTGCATTGTCACTTCGCAGTTCGGCTGGTCCGCTAACAT
GGAGCGCATCATGAAGGCCCAGGCTCTGCGTGATACCGCCACAATGGGCT
ACATGGCCGGCAAGAAGCAGCTGGAGATCAACCCCGATCACCCAATTGTG
GAGACTCTCCGCCAGAAGGCCGATGCCGACAAGAACGATAAGGCCGTCAA
GGATCTGGTCATCCTGCTGTTCGAGACCTCTCTGCTGTCCTCTGGATTCT
CGCTGGACAGCCCCCAGGTGCACGCCAGCCGCATCTACCGCATGATCAAG
CTGGGCTTGGGAATCGACGAGGACGAGCCTATGACTACCGACGATGCCCA
GAGCGCCGGAGATGCCCCCTCGCTGGTTGAGGACACCGAGGACGCTTCCC
ACATGGAGGAGGTCGATTAAAAGCTTTCTAGACCAT

BS14623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp83-RB 2154 CG1242-PB 1..2154 17..2170 10725 99.9 Plus
Hsp83-RA 2154 CG1242-PA 1..2154 17..2170 10725 99.9 Plus
Gp93-RA 2364 CG5520-PA 1217..1392 1047..1222 265 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp83-RB 2960 CG1242-RB 400..2553 17..2170 10725 99.9 Plus
Hsp83-RA 2713 CG1242-RA 153..2306 17..2170 10725 99.9 Plus
Gp93-RA 2841 CG5520-RA 1368..1543 1047..1222 265 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3194499..3196652 17..2170 10725 99.9 Plus
Y 3667352 Y 1974862..1975027 604..769 830 100 Plus
Y 3667352 Y 1945382..1945547 604..769 815 99.4 Plus
Y 3667352 Y 1959892..1960057 604..769 815 99.4 Plus
Y 3667352 Y 1967986..1968151 604..769 815 99.4 Plus
U 3151297 U 1163245..1163385 744..604 690 99.3 Minus
Y 3667352 Y 1959696..1959750 71..17 275 100 Minus
Y 3667352 Y 1974666..1974720 71..17 275 100 Minus
Y 3667352 Y 1945186..1945239 71..18 270 100 Minus
Y 3667352 Y 1967790..1967843 71..18 270 100 Minus
U 3151297 U 1163528..1163581 18..71 270 100 Plus
3R 32079331 3R 27950345..27950520 1047..1222 265 76.7 Plus
3R 32079331 3R 27949411..27949473 98..160 195 87.3 Plus
Blast to na_te.dros performed on 2014-11-28 02:16:57 has no hits.

BS14623.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:48 Download gff for BS14623.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 342..2493 17..2168 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:30 Download gff for BS14623.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 153..2304 17..2168 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:18 Download gff for BS14623.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 342..2493 17..2168 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:03 Download gff for BS14623.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp83-RA 153..2304 17..2168 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:03 Download gff for BS14623.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3194499..3196650 17..2168 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:30 Download gff for BS14623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3194499..3196650 17..2168 99   Plus

BS14623.pep Sequence

Translation from 16 to 2169

> BS14623.pep
MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYE
SLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAK
SGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSKNNDDEQYVW
ESSAGGSFTVRADNSEPLGRGTKIVLYIKEDQTDYLEESKIKEIVNKHSQ
FIGYPIKLLVEKEREKEVSDDEADDEKKEGDEKKEMETDEPKIEDVGEDE
DADKKDKDAKKKKTIKEKYTEDEELNKTKPIWTRNPDDISQEEYGEFYKS
LTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKLYV
RRVFIMDNCEDLIPEYLNFMKGVVDSEDLPLNISREMLQQNKVLKVIRKN
LVKKTMELIEELTEDKENYKKFYDQFSKNLKLGVHEDSNNRAKLADFLRF
HTSASGDDFCSLADYVSRMKDNQKHVYFITGESKDQVSNSAFVERVKARG
FEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDK
AKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMK
AQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVIL
LFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDA
PSLVEDTEDASHMEEVD*

BS14623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp83-PB 717 CG1242-PB 1..717 1..717 3664 100 Plus
Hsp83-PA 717 CG1242-PA 1..717 1..717 3664 100 Plus
Gp93-PA 787 CG5520-PA 70..777 3..715 1575 45.3 Plus
Trap1-PB 691 CG3152-PB 68..672 10..664 777 30.6 Plus
Trap1-PA 691 CG3152-PA 68..672 10..664 777 30.6 Plus