Clone Sequence Records
BS14623.3prime Sequence
733 bp (694 high quality bases) assembled on 2006-10-13
> BS14623.3prime
ATGGTCTAGAAAGCTTTTAATCGACCTCCTCCATGTGGGAAGCGTCCTCG
GTGTCCTCAACCAGCGAGGGGGCATCTCCGGCGCTCTGGGCATCGTCGGT
AGTCATAGGCTCGTCCTCGTCGATTCCCAAGCCCAGCTTGATCATGCGGT
AGATGCGGCTGGCGTGCACCTGGGGGCTGTCCAGCGAGAATCCAGAGGAC
AGCAGAGAGGTCTCGAACAGCAGGATGACCAGATCCTTGACGGCCTTATC
GTTCTTGTCGGCATCGGCCTTCTGGCGGAGAGTCTCCACAATTGGGTGAT
CGGGGTTGATCTCCAGCTGCTTCTTGCCGGCCATGTAGCCCATTGTGGCG
GTATCACGCAGAGCCTGGGCCTTCATGATGCGCTCCATGTTAGCGGACCA
GCCGAACTGCGAAGTGACAATGCAGCAGGGCGAATCCACCAGGCGGTTGG
ACACCACCACCTTCTCGACCTTGTTGTCCAGGATGGACTTCATCAGCTTG
CACAGGCTCTCGAACTTGGCCTTGTCCTCCTCGCGCTTCTTCTTCTCGCT
CTCATCCTCAGGCAGCTCCAGACCCTCCTTGGTGACAGAGACCAGCTGCT
TGCCCTTGTACTCCTTCAAGTGCTGGATGACATACTCATCGATGGGCTCG
GTCATGTAAACCACCTCGAAGCCACGGGCCTTGACGCGCTCCACGAAAGC
AGAGTTGCTGACCTGGTCCTTGGACTCGCCAGT
BS14623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1242-PA | 2154 | Hsp83-RA | 1438..2154 | 733..17 | 3510 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp83-RB | 2960 | CG1242-RB | 1837..2553 | 733..17 | 3540 | 99.6 | Minus |
Hsp83-RA | 2713 | CG1242-RA | 1590..2306 | 733..17 | 3540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3195936..3196652 | 733..17 | 3540 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:48:45 has no hits.
BS14623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:28 Download gff for
BS14623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1242-PA | 1438..2154 | 17..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:22 Download gff for
BS14623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 1590..2308 | 13..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:57 Download gff for
BS14623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 1590..2308 | 13..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:57 Download gff for
BS14623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3195936..3196654 | 13..733 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:22 Download gff for
BS14623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3195936..3196654 | 13..733 | 99 | | Minus |
BS14623.5prime Sequence
630 bp (629 high quality bases) assembled on 2006-10-13
> BS14623.5prime
GAAGTTATCAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGG
CTGAGATTGCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAAC
AAGGAGATTTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGA
CAAGATCCGCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCA
AGGAGCTGTACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACC
ATCATTGATACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTT
GGGAACCATCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGG
CTGGTGCCGACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCC
GCCTACCTGGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGA
CGAGCAGTACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTG
CCGACAACTCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATT
CAGGAGGACCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGT
TAACAAGCACTCCCAGTTCATTGGCTACCC
BS14623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1242-PA | 2154 | Hsp83-RA | 1..614 | 17..630 | 2995 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp83-RB | 2960 | CG1242-RB | 400..1013 | 17..630 | 3025 | 99.5 | Plus |
Hsp83-RA | 2713 | CG1242-RA | 153..766 | 17..630 | 3025 | 99.5 | Plus |
Gp93-RA | 2841 | CG5520-RA | 434..496 | 98..160 | 195 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3194499..3195112 | 17..630 | 3025 | 99.5 | Plus |
Y | 3667352 | Y | 1959696..1959750 | 71..17 | 275 | 100 | Minus |
Y | 3667352 | Y | 1974666..1974720 | 71..17 | 275 | 100 | Minus |
Y | 3667352 | Y | 1945186..1945239 | 71..18 | 270 | 100 | Minus |
Y | 3667352 | Y | 1967790..1967843 | 71..18 | 270 | 100 | Minus |
U | 3151297 | U | 1163528..1163581 | 18..71 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:06:38 has no hits.
BS14623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:29 Download gff for
BS14623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1242-PA | 1..614 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:10:33 Download gff for
BS14623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 145..766 | 9..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:13 Download gff for
BS14623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 145..766 | 9..630 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:13 Download gff for
BS14623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3194499..3195112 | 17..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:10:33 Download gff for
BS14623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3194499..3195112 | 17..630 | 99 | | Plus |
BS14623.complete Sequence
2186 bp assembled on 2009-12-07
GenBank Submission: KX800702
> BS14623.complete
GAAGTTATCAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGG
CTGAGATTGCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAAC
AAGGAGATTTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGA
CAAGATCCGCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCA
AGGAGCTGTACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACC
ATCATTGATACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTT
GGGAACCATCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGG
CTGGTGCCGACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCC
GCCTACCTGGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGA
CGAGCAGTACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTG
CCGACAACTCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATC
AAGGAGGACCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGT
TAACAAGCACTCCCAGTTCATTGGCTACCCCATCAAGCTGCTCGTAGAGA
AGGAGCGCGAGAAGGAGGTCAGCGACGATGAGGCTGATGATGAGAAGAAG
GAAGGTGATGAGAAGAAGGAGATGGAGACTGATGAGCCCAAAATCGAGGA
TGTTGGCGAGGATGAGGATGCCGACAAGAAGGACAAGGATGCCAAGAAGA
AGAAGACCATCAAGGAGAAGTACACTGAGGATGAGGAGCTGAACAAGACC
AAGCCCATCTGGACCCGCAATCCCGATGATATCTCCCAGGAGGAGTACGG
CGAGTTCTACAAATCCCTGACCAACGACTGGGAGGATCATCTGGCCGTCA
AGCACTTCTCCGTGGAGGGTCAGCTGGAGTTCCGTGCTCTGCTCTTCATT
CCCCGTCGCACGCCCTTCGATCTCTTTGAGAACCAGAAGAAGCGCAACAA
CATCAAGCTGTACGTGCGTCGTGTCTTCATCATGGACAACTGCGAGGACC
TCATTCCAGAGTACTTGAACTTCATGAAGGGTGTGGTCGACTCCGAGGAT
CTGCCCCTCAACATCTCACGTGAGATGCTGCAGCAGAACAAGGTCCTAAA
GGTGATCCGCAAGAACCTGGTCAAGAAGACCATGGAGCTGATTGAGGAGC
TCACCGAGGACAAGGAGAACTACAAGAAGTTCTATGACCAGTTCAGCAAG
AACCTGAAGCTGGGTGTGCACGAGGACAGCAACAACCGTGCCAAGTTGGC
CGACTTCCTTCGCTTCCACACCTCTGCCTCCGGCGACGATTTCTGCTCCC
TGGCCGACTACGTGTCGCGCATGAAGGATAACCAGAAGCACGTGTACTTC
ATCACTGGCGAGTCCAAGGACCAGGTCAGCAACTCTGCCTTCGTGGAGCG
CGTCAAGGCCCGTGGCTTCGAGGTGGTCTACATGACCGAGCCCATCGATG
AGTATGTCATCCAGCACTTGAAGGAGTACAAGGGCAAGCAGCTGGTCTCT
GTCACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGAGCGAGAAGAAGAA
GCGCGAGGAGGACAAGGCCAAGTTCGAGAGCCTGTGCAAGCTGATGAAGT
CCATCCTGGACAACAAGGTCGAGAAGGTGGTGGTGTCCAACCGCCTGGTG
GATTCGCCCTGCTGCATTGTCACTTCGCAGTTCGGCTGGTCCGCTAACAT
GGAGCGCATCATGAAGGCCCAGGCTCTGCGTGATACCGCCACAATGGGCT
ACATGGCCGGCAAGAAGCAGCTGGAGATCAACCCCGATCACCCAATTGTG
GAGACTCTCCGCCAGAAGGCCGATGCCGACAAGAACGATAAGGCCGTCAA
GGATCTGGTCATCCTGCTGTTCGAGACCTCTCTGCTGTCCTCTGGATTCT
CGCTGGACAGCCCCCAGGTGCACGCCAGCCGCATCTACCGCATGATCAAG
CTGGGCTTGGGAATCGACGAGGACGAGCCTATGACTACCGACGATGCCCA
GAGCGCCGGAGATGCCCCCTCGCTGGTTGAGGACACCGAGGACGCTTCCC
ACATGGAGGAGGTCGATTAAAAGCTTTCTAGACCAT
BS14623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp83-RB | 2154 | CG1242-PB | 1..2154 | 17..2170 | 10725 | 99.9 | Plus |
Hsp83-RA | 2154 | CG1242-PA | 1..2154 | 17..2170 | 10725 | 99.9 | Plus |
Gp93-RA | 2364 | CG5520-PA | 1217..1392 | 1047..1222 | 265 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp83-RB | 2960 | CG1242-RB | 400..2553 | 17..2170 | 10725 | 99.9 | Plus |
Hsp83-RA | 2713 | CG1242-RA | 153..2306 | 17..2170 | 10725 | 99.9 | Plus |
Gp93-RA | 2841 | CG5520-RA | 1368..1543 | 1047..1222 | 265 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3194499..3196652 | 17..2170 | 10725 | 99.9 | Plus |
Y | 3667352 | Y | 1974862..1975027 | 604..769 | 830 | 100 | Plus |
Y | 3667352 | Y | 1945382..1945547 | 604..769 | 815 | 99.4 | Plus |
Y | 3667352 | Y | 1959892..1960057 | 604..769 | 815 | 99.4 | Plus |
Y | 3667352 | Y | 1967986..1968151 | 604..769 | 815 | 99.4 | Plus |
U | 3151297 | U | 1163245..1163385 | 744..604 | 690 | 99.3 | Minus |
Y | 3667352 | Y | 1959696..1959750 | 71..17 | 275 | 100 | Minus |
Y | 3667352 | Y | 1974666..1974720 | 71..17 | 275 | 100 | Minus |
Y | 3667352 | Y | 1945186..1945239 | 71..18 | 270 | 100 | Minus |
Y | 3667352 | Y | 1967790..1967843 | 71..18 | 270 | 100 | Minus |
U | 3151297 | U | 1163528..1163581 | 18..71 | 270 | 100 | Plus |
3R | 32079331 | 3R | 27950345..27950520 | 1047..1222 | 265 | 76.7 | Plus |
3R | 32079331 | 3R | 27949411..27949473 | 98..160 | 195 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:57 has no hits.
BS14623.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:48 Download gff for
BS14623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 342..2493 | 17..2168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:30 Download gff for
BS14623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 153..2304 | 17..2168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:18 Download gff for
BS14623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 342..2493 | 17..2168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:03 Download gff for
BS14623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp83-RA | 153..2304 | 17..2168 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:03 Download gff for
BS14623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3194499..3196650 | 17..2168 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:30 Download gff for
BS14623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3194499..3196650 | 17..2168 | 99 | | Plus |
BS14623.pep Sequence
Translation from 16 to 2169
> BS14623.pep
MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYE
SLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAK
SGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSKNNDDEQYVW
ESSAGGSFTVRADNSEPLGRGTKIVLYIKEDQTDYLEESKIKEIVNKHSQ
FIGYPIKLLVEKEREKEVSDDEADDEKKEGDEKKEMETDEPKIEDVGEDE
DADKKDKDAKKKKTIKEKYTEDEELNKTKPIWTRNPDDISQEEYGEFYKS
LTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKLYV
RRVFIMDNCEDLIPEYLNFMKGVVDSEDLPLNISREMLQQNKVLKVIRKN
LVKKTMELIEELTEDKENYKKFYDQFSKNLKLGVHEDSNNRAKLADFLRF
HTSASGDDFCSLADYVSRMKDNQKHVYFITGESKDQVSNSAFVERVKARG
FEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDK
AKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMK
AQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVIL
LFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDA
PSLVEDTEDASHMEEVD*
BS14623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp83-PB | 717 | CG1242-PB | 1..717 | 1..717 | 3664 | 100 | Plus |
Hsp83-PA | 717 | CG1242-PA | 1..717 | 1..717 | 3664 | 100 | Plus |
Gp93-PA | 787 | CG5520-PA | 70..777 | 3..715 | 1575 | 45.3 | Plus |
Trap1-PB | 691 | CG3152-PB | 68..672 | 10..664 | 777 | 30.6 | Plus |
Trap1-PA | 691 | CG3152-PA | 68..672 | 10..664 | 777 | 30.6 | Plus |