Clone Sequence Records
BS14624.3prime Sequence
761 bp (696 high quality bases) assembled on 2006-10-13
> BS14624.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGACGTCCGCCACGACGACGACGGCGC
ATGAGGCGCACGAGCCGGCGACGCTGCTGCTGGCGGTGTCTGCGCTGGCG
CTGCTGCTGCTGGCGGCGACGACGGTTCATGTTGTTCCTCCTCTGGCGCT
GGCGCTGGGCCTTGGAACGGTTCCTGTTGCGGCGCTGGCGCTGTGAGACG
CGCTTACGGCTCTGTTGGCGCTGGCGGCGCAAGCGTTGCTGGCTTCGCTT
CTCGGCGGCCCTCTGGCGGCGAAGGAGGGACCTGATCCGCTGGTTGTGCT
CACGCTGGAGGCGCTGGATTCGGCGACGGTTGCGCTGTTCCTGCTGGAAC
TGGCGCCACTGGAGTTCCGAGGGGCGGACCAACGAGCCGGACTCTGAGGA
CTGCTGCACGGCATTGCTATTGCCACCGGCGGAAGGAGCGGCCACAAAGT
AGCTCTCCTCATCGTCGTCATCATCTTCGTCCTCCAGGCTGTCGTCACCT
TCGTCTTCTTCATCTTCAAACGCCCTGGGCATCTCCTCATCATCTTCCTC
AACATCGTCTTGAATTGCGGGGAAGGCACGACCGGTGGTGGTGTCGGAGG
TTGTGGGCGTGGTGGTGCTCGTCGAGGTGCCAGTGGACGTTGTTGGTGCA
GTCGGCGTGGTCGTCTCCGTAGTGGAGGTGGGCGTGGTGGTGGTAGTTGG
GGCAACCGTGGTCGTCGTGGTGGTGCCCTTCAGCGAGGTCAGCTTGTTGG
CAATCGACGAT
BS14624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-PA | 882 | CG14420-RA | 139..882 | 760..17 | 3520 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-RA | 1570 | CG14420-RA | 766..1509 | 760..17 | 3600 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2939723..2940466 | 760..17 | 3600 | 98.9 | Minus |
Blast to na_te.dros performed 2015-02-12 11:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 491..462 | 114 | 86.7 | Minus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 544..501 | 111 | 74.5 | Minus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 544..501 | 111 | 74.5 | Minus |
BS14624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:29 Download gff for
BS14624.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-PA | 138..882 | 17..761 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:52 Download gff for
BS14624.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 765..1515 | 11..761 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:26 Download gff for
BS14624.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 765..1515 | 11..761 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:26 Download gff for
BS14624.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2939722..2940472 | 11..761 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:52 Download gff for
BS14624.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2833755..2834505 | 11..761 | 98 | | Minus |
BS14624.5prime Sequence
739 bp (732 high quality bases) assembled on 2006-10-13
> BS14624.5prime
GAAGTTATCAGTCGACATGCATTGCCTGCTTCAACTGAGTCTGGCTGTGG
CCCTTTGCGCCCTCTTAGCCCCATCCACTACCTTGGCCGAACGCCGCAAT
GTGTACCGCCTGGGTGGACGCGCCTCCGACGCTCAGATGGAGGCCCGCTT
CACATCGTCGATTGCCAACAAGCTGACCTCGCTGAAGGGCACCACCACGA
CGACCACGGTTGCCCCCACTACCACCACCACGCCCACCTCCACTACGGAG
ACGACCACGCCGACTGCACCAACAACGTCCACTGGCACCTCGACGAGCAC
CACCACGCCCACAACCTCCGACACCACCACCGGTCGTGCCTTCCCCGCAA
TTCAAGACGATGTTGAGGAAGATGATGAGGAGATGCCCAGGGCGTTTGAA
GATGAAGAAGACGAAGGTGACGACAGCCTGGAGGACGAAGATGATGACGA
CGATGAGGAGAGCTACTTTGTGGCCGCTCCTTCCGCCGGTGGCAATAGCA
ATGCCGTGCAGCAGTCCTCAGAGTCCGGCTCGTTGGTCCGCCCCTCGGAA
CTCCAGTGGCGCCAGTTCCAGCAGGAACAGCGCAACCGTCGCCGAATCCA
GCGCCTCCAGCGTGAGCACAACCAGCGGATCAGGTCCCTCCTTCGCCGCC
AGAGGGCCGCCGAGAAGCGAAGCCAGCAACGCTTGCGCCGCCAGCGCCAA
CAGAGCCGTAAGCGCGTCTCACAGCGCCAGCGCCGCAAC
BS14624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-PA | 882 | CG14420-RA | 1..723 | 17..739 | 3465 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-RA | 1570 | CG14420-RA | 628..1350 | 17..739 | 3525 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2939654..2940307 | 86..739 | 3180 | 99.1 | Plus |
| X | 23542271 | X | 2939483..2939552 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 424..453 | 114 | 86.7 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 371..414 | 111 | 74.5 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 371..414 | 111 | 74.5 | Plus |
BS14624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:30 Download gff for
BS14624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:17 Download gff for
BS14624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1350 | 7..739 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:49 Download gff for
BS14624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1350 | 7..739 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:49 Download gff for
BS14624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2939474..2939552 | 7..86 | 95 | -> | Plus |
| X | 2939655..2940307 | 87..739 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:17 Download gff for
BS14624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2833507..2833585 | 7..86 | 95 | -> | Plus |
| arm_X | 2833688..2834340 | 87..739 | 99 | | Plus |
BS14624.complete Sequence
914 bp assembled on 2006-11-01
GenBank Submission: FJ637727
> BS14624.complete
GAAGTTATCAGTCGACATGCATTGCCTGCTTCAACTGAGTCTGGCTGTGG
CCCTTTGCGCCCTCTTAGCCCCATCCACTACCTTGGCCGAACGCCGCAAT
GTGTACCGCCTGGGTGGACGCGCCTCCGACGCTCAGATGGAGGCCCGCTT
CACATCGTCGATTGCCAACAAGCTGACCTCGCTGAAGGGCACCACCACGA
CGACCACGGTTGCCCCCACTACCACCACCACGCCCACCTCCACTACGGAG
ACGACCACGCCGACTGCACCAACAACGTCCACTGGCACCTCGACGAGCAC
CACCACGCCCACAACCTCCGACACCACCACCGGTCGTGCCTTCCCCGCAA
TTCAAGACGATGTTGAGGAAGATGATGAGGAGATGCCCAGGGCGTTTGAA
GATGAAGAAGACGAAGGTGACGACAGCCTGGAGGACGAAGATGATGACGA
CGATGAGGAGAGCTACTTTGTGGCCGCTCCTTCCGCCGGTGGCAATAGCA
ATGCCGTGCAGCAGTCCTCAGAGTCCGGCTCGTTGGTCCGCCCCTCGGAA
CTCCAGTGGCGCCAGTTCCAGCAGGAACAGCGCAACCGTCGCCGAATCCA
GCGCCTCCAGCGTGAGCACAACCAGCGGATCAGGTCCCTCCTTCGCCGCC
AGAGGGCCGCCGAGAAGCGAAGCCAGCAACGCTTGCGCCGCCAGCGCCAA
CAGAGCCGTAAGCGCGTCTCACAGCGCCAGCGCCGCAACAGGAACCGTTC
CAAGGCCCAGCGCCAGCGCCAGAGGAGGAACAACATGAACCGTCGTCGCC
GCCAGCAGCAGCAGCGCCAGCGCAGACACCGCCAGCAGCAGCGTCGCCGG
CTCGTGCGCCTCATGCGCCGTCGTCGTCGTGGCGGACGTCGCAACTAAAA
GCTTTCTAGACCAT
BS14624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-RA | 882 | CG14420-PA | 1..882 | 17..898 | 4290 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-RA | 1570 | CG14420-RA | 628..1509 | 17..898 | 4290 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2939654..2940466 | 86..898 | 3945 | 99 | Plus |
| X | 23542271 | X | 2939483..2939552 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 424..453 | 114 | 86.7 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 371..414 | 111 | 74.5 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 371..414 | 111 | 74.5 | Plus |
BS14624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:02 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:06 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1515 | 7..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:11 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 628..1507 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:02 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 619..1515 | 7..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:59 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14420-RA | 628..1507 | 17..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:59 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2939483..2939552 | 17..86 | 100 | -> | Plus |
| X | 2939655..2940464 | 87..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:11 Download gff for
BS14624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2833516..2833585 | 17..86 | 100 | -> | Plus |
| arm_X | 2833688..2834497 | 87..896 | 99 | | Plus |
BS14624.pep Sequence
Translation from 16 to 897
> BS14624.pep
MHCLLQLSLAVALCALLAPSTTLAERRNVYRLGGRASDAQMEARFTSSIA
NKLTSLKGTTTTTTVAPTTTTTPTSTTETTTPTAPTTSTGTSTSTTTPTT
SDTTTGRAFPAIQDDVEEDDEEMPRAFEDEEDEGDDSLEDEDDDDDEESY
FVAAPSAGGNSNAVQQSSESGSLVRPSELQWRQFQQEQRNRRRIQRLQRE
HNQRIRSLLRRQRAAEKRSQQRLRRQRQQSRKRVSQRQRRNRNRSKAQRQ
RQRRNNMNRRRRQQQQRQRRHRQQQRRRLVRLMRRRRRGGRRN*
BS14624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14420-PA | 293 | CG14420-PA | 1..293 | 1..293 | 1477 | 100 | Plus |
| CG14422-PA | 294 | CG14422-PA | 8..294 | 4..293 | 350 | 34 | Plus |
| CG14421-PA | 238 | CG14421-PA | 1..232 | 1..272 | 342 | 34.8 | Plus |
| CG14418-PB | 284 | CG14418-PB | 124..277 | 130..292 | 183 | 31.2 | Plus |
| CG14418-PA | 327 | CG14418-PA | 167..320 | 130..292 | 183 | 31.2 | Plus |
| CG14418-PB | 284 | CG14418-PB | 102..266 | 164..291 | 151 | 30.3 | Plus |
