Clone Sequence Records
BS14627.3prime Sequence
634 bp (569 high quality bases) assembled on 2006-10-13
> BS14627.3prime
ATGGTCTAGAAAGCTTTCAGTCACCAATGGCTGCCACCTGGGCTGTCTTC
CGCCTAATATACTCCTGATCCCCCAGATTGATGGCAGCTCCAACCAAGCC
TCCCGTTTTCAAATCGAACTCATAGACGCGTGGCACGCAATTTGGAATGT
TAACCTTTTCGATGGCCTCGTTGGAGATTCCCTCAATGTGCTGGACGAGA
GCACGGGCCACAGTTCCGTGGACGCACATTAGTACCCGGGTGCCTTGGAA
CACTTCCCGCCTGACCTCCTTCCACACGGGTTTCACTCGATCGACGCACA
TGTGAAGGGATTCCGCGAGGGGGAACTCACCGCGAGGAACATCATCGAAT
ATGGGATTGCTGCAAATGGTGTAGAAGTAGCGGTTCTTCTCATCGATGGG
CGGCGGTACGCAGTCGTATCCACGTCGCCAGGCCTGAACCTGCTCCTCCC
CATAGCGATCGGCTACCACTCGTTTCCGGCAACCAGTCAGATTTCCGTAG
TGCCTTTCGCACAGCCGCCAATCCTCCTTAATGGGCACATAGGCGCAGTT
CAACTTGGAGAGTATCAATTCGGCCGTTTGACGAGATCTGCTCAATACGG
ATGAATAGACCACGTCGAATTCCAACTCGGATTG
BS14627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-PA | 804 | CG7059-RA | 187..804 | 634..17 | 3090 | 100 | Minus |
CG7059-PC | 762 | CG7059-RC | 145..762 | 634..17 | 3090 | 100 | Minus |
CG7059-PD | 789 | CG7059-RD | 172..789 | 634..17 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RD | 1261 | CG7059-RD | 378..995 | 634..17 | 3090 | 100 | Minus |
CG7059-RC | 1238 | CG7059-RC | 355..972 | 634..17 | 3090 | 100 | Minus |
CG7059-RA | 1332 | CG7059-RA | 449..1066 | 634..17 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22391410..22391864 | 634..180 | 2275 | 100 | Minus |
3R | 32079331 | 3R | 22391919..22392083 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:48:54 has no hits.
BS14627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:31 Download gff for
BS14627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-PD | 172..789 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:55 Download gff for
BS14627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 449..1066 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:14 Download gff for
BS14627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 449..1066 | 17..634 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:14 Download gff for
BS14627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22391410..22391863 | 181..634 | 100 | -> | Minus |
3R | 22391920..22392083 | 17..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:55 Download gff for
BS14627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18217132..18217585 | 181..634 | 100 | -> | Minus |
arm_3R | 18217642..18217805 | 17..180 | 100 | | Minus |
BS14627.5prime Sequence
703 bp (702 high quality bases) assembled on 2006-10-13
> BS14627.5prime
GAAGTTATCAGTCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAAACTGTGGCCCGTGCTCTCGTCCAGCAC
ATTGAGGGAATCTCCAACGAGGCCATCGAATAGGTTAACATTCCAAATTG
CGT
BS14627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-PA | 804 | CG7059-RA | 1..607 | 17..623 | 2985 | 99.6 | Plus |
CG7059-PD | 789 | CG7059-RD | 18..592 | 49..623 | 2825 | 99.6 | Plus |
CG7059-PC | 762 | CG7059-RC | 1..565 | 59..623 | 2775 | 99.6 | Plus |
CG7059-PA | 804 | CG7059-RA | 606..686 | 623..703 | 380 | 98.7 | Plus |
CG7059-PD | 789 | CG7059-RD | 591..671 | 623..703 | 380 | 98.7 | Plus |
CG7059-PC | 762 | CG7059-RC | 564..644 | 623..703 | 380 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RA | 1332 | CG7059-RA | 262..948 | 16..703 | 3370 | 99.4 | Plus |
CG7059-RD | 1261 | CG7059-RD | 224..877 | 49..703 | 3205 | 99.4 | Plus |
CG7059-RC | 1238 | CG7059-RC | 201..854 | 49..703 | 3205 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22391368..22391864 | 161..658 | 2410 | 99.4 | Plus |
3R | 32079331 | 3R | 22391194..22391307 | 49..162 | 570 | 100 | Plus |
3R | 32079331 | 3R | 22391919..22391965 | 657..703 | 220 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:13:08 has no hits.
BS14627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:32 Download gff for
BS14627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-PA | 1..686 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:56 Download gff for
BS14627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 258..948 | 10..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:10 Download gff for
BS14627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 258..948 | 10..703 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:10 Download gff for
BS14627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22390037..22390073 | 10..48 | 92 | -> | Plus |
3R | 22391194..22391306 | 49..161 | 100 | -> | Plus |
3R | 22391369..22391863 | 162..657 | 99 | -> | Plus |
3R | 22391920..22391965 | 658..703 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:56 Download gff for
BS14627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18215759..18215795 | 10..48 | 92 | -> | Plus |
arm_3R | 18216916..18217028 | 49..161 | 100 | -> | Plus |
arm_3R | 18217091..18217585 | 162..657 | 99 | -> | Plus |
arm_3R | 18217642..18217687 | 658..703 | 97 | | Plus |
BS14627.complete Sequence
836 bp assembled on 2006-11-01
GenBank Submission: FJ637728
> BS14627.complete
GAAGTTATCAGTCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACA
TTGAGGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGC
GTGCCACGCGTCTATGAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGC
TGCCATCAATCTGGGGGATCAGGAGTATATTAGGCGGAAGACAGCCCAGG
TGGCAGCCATTGGTGACTGAAAGCTTTCTAGACCAT
BS14627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RA | 804 | CG7059-PA | 1..804 | 17..820 | 3990 | 99.8 | Plus |
CG7059-RD | 789 | CG7059-PD | 18..789 | 49..820 | 3830 | 99.7 | Plus |
CG7059-RC | 762 | CG7059-PC | 1..762 | 59..820 | 3780 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-RA | 1332 | CG7059-RA | 262..1066 | 16..820 | 3995 | 99.8 | Plus |
CG7059-RD | 1261 | CG7059-RD | 224..995 | 49..820 | 3830 | 99.7 | Plus |
CG7059-RC | 1238 | CG7059-RC | 201..972 | 49..820 | 3830 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22391368..22391864 | 161..657 | 2455 | 99.6 | Plus |
3R | 32079331 | 3R | 22391919..22392083 | 656..820 | 825 | 100 | Plus |
3R | 32079331 | 3R | 22391194..22391307 | 49..162 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:10 has no hits.
BS14627.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:04 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:08 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 258..1066 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:29 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 263..1065 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:04 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 258..1066 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:49 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7059-RA | 263..1065 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:49 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22390042..22390073 | 17..48 | 100 | -> | Plus |
3R | 22391194..22391306 | 49..161 | 100 | -> | Plus |
3R | 22391369..22391863 | 162..656 | 99 | -> | Plus |
3R | 22391920..22392082 | 657..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:29 Download gff for
BS14627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18215764..18215795 | 17..48 | 100 | -> | Plus |
arm_3R | 18216916..18217028 | 49..161 | 100 | -> | Plus |
arm_3R | 18217091..18217585 | 162..656 | 99 | -> | Plus |
arm_3R | 18217642..18217804 | 657..819 | 100 | | Plus |
BS14627.pep Sequence
Translation from 16 to 819
> BS14627.pep
MVFFKFLKSKLSQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGV
QEALTVAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKED
WRLCERHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFY
TICSNPIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCV
HGTVARALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLG
DQEYIRRKTAQVAAIGD*
BS14627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7059-PA | 267 | CG7059-PA | 1..267 | 1..267 | 1414 | 100 | Plus |
CG7059-PD | 262 | CG7059-PD | 7..262 | 12..267 | 1360 | 100 | Plus |
CG7059-PC | 253 | CG7059-PC | 1..253 | 15..267 | 1345 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 6..252 | 20..266 | 501 | 41.4 | Plus |
Pglym78-PB | 255 | CG1721-PB | 6..252 | 20..266 | 501 | 41.4 | Plus |