Clone BS14627 Report

Search the DGRC for BS14627

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7059-RA
Protein status:BS14627.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14627.3prime Sequence

634 bp (569 high quality bases) assembled on 2006-10-13

> BS14627.3prime
ATGGTCTAGAAAGCTTTCAGTCACCAATGGCTGCCACCTGGGCTGTCTTC
CGCCTAATATACTCCTGATCCCCCAGATTGATGGCAGCTCCAACCAAGCC
TCCCGTTTTCAAATCGAACTCATAGACGCGTGGCACGCAATTTGGAATGT
TAACCTTTTCGATGGCCTCGTTGGAGATTCCCTCAATGTGCTGGACGAGA
GCACGGGCCACAGTTCCGTGGACGCACATTAGTACCCGGGTGCCTTGGAA
CACTTCCCGCCTGACCTCCTTCCACACGGGTTTCACTCGATCGACGCACA
TGTGAAGGGATTCCGCGAGGGGGAACTCACCGCGAGGAACATCATCGAAT
ATGGGATTGCTGCAAATGGTGTAGAAGTAGCGGTTCTTCTCATCGATGGG
CGGCGGTACGCAGTCGTATCCACGTCGCCAGGCCTGAACCTGCTCCTCCC
CATAGCGATCGGCTACCACTCGTTTCCGGCAACCAGTCAGATTTCCGTAG
TGCCTTTCGCACAGCCGCCAATCCTCCTTAATGGGCACATAGGCGCAGTT
CAACTTGGAGAGTATCAATTCGGCCGTTTGACGAGATCTGCTCAATACGG
ATGAATAGACCACGTCGAATTCCAACTCGGATTG

BS14627.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-PA 804 CG7059-RA 187..804 634..17 3090 100 Minus
CG7059-PC 762 CG7059-RC 145..762 634..17 3090 100 Minus
CG7059-PD 789 CG7059-RD 172..789 634..17 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RD 1261 CG7059-RD 378..995 634..17 3090 100 Minus
CG7059-RC 1238 CG7059-RC 355..972 634..17 3090 100 Minus
CG7059-RA 1332 CG7059-RA 449..1066 634..17 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22391410..22391864 634..180 2275 100 Minus
3R 32079331 3R 22391919..22392083 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:48:54 has no hits.

BS14627.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:31 Download gff for BS14627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-PD 172..789 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:55 Download gff for BS14627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 449..1066 17..634 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:14 Download gff for BS14627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 449..1066 17..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:14 Download gff for BS14627.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22391410..22391863 181..634 100 -> Minus
3R 22391920..22392083 17..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:55 Download gff for BS14627.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18217132..18217585 181..634 100 -> Minus
arm_3R 18217642..18217805 17..180 100   Minus

BS14627.5prime Sequence

703 bp (702 high quality bases) assembled on 2006-10-13

> BS14627.5prime
GAAGTTATCAGTCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAAACTGTGGCCCGTGCTCTCGTCCAGCAC
ATTGAGGGAATCTCCAACGAGGCCATCGAATAGGTTAACATTCCAAATTG
CGT

BS14627.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-PA 804 CG7059-RA 1..607 17..623 2985 99.6 Plus
CG7059-PD 789 CG7059-RD 18..592 49..623 2825 99.6 Plus
CG7059-PC 762 CG7059-RC 1..565 59..623 2775 99.6 Plus
CG7059-PA 804 CG7059-RA 606..686 623..703 380 98.7 Plus
CG7059-PD 789 CG7059-RD 591..671 623..703 380 98.7 Plus
CG7059-PC 762 CG7059-RC 564..644 623..703 380 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RA 1332 CG7059-RA 262..948 16..703 3370 99.4 Plus
CG7059-RD 1261 CG7059-RD 224..877 49..703 3205 99.4 Plus
CG7059-RC 1238 CG7059-RC 201..854 49..703 3205 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22391368..22391864 161..658 2410 99.4 Plus
3R 32079331 3R 22391194..22391307 49..162 570 100 Plus
3R 32079331 3R 22391919..22391965 657..703 220 97.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:13:08 has no hits.

BS14627.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:32 Download gff for BS14627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-PA 1..686 17..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:56 Download gff for BS14627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 258..948 10..703 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:10 Download gff for BS14627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 258..948 10..703 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:10 Download gff for BS14627.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22390037..22390073 10..48 92 -> Plus
3R 22391194..22391306 49..161 100 -> Plus
3R 22391369..22391863 162..657 99 -> Plus
3R 22391920..22391965 658..703 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:56 Download gff for BS14627.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18215759..18215795 10..48 92 -> Plus
arm_3R 18216916..18217028 49..161 100 -> Plus
arm_3R 18217091..18217585 162..657 99 -> Plus
arm_3R 18217642..18217687 658..703 97   Plus

BS14627.complete Sequence

836 bp assembled on 2006-11-01

GenBank Submission: FJ637728

> BS14627.complete
GAAGTTATCAGTCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCT
CCCAATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAA
AGTGATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATT
GAGTGAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCG
TCCAATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGA
TCTCGTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGT
GCCCATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGA
CTGGTTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTT
CAGGCCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAA
GAACCGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTC
CTCGCGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGA
GTGAAACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCG
GGTACTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACA
TTGAGGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGC
GTGCCACGCGTCTATGAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGC
TGCCATCAATCTGGGGGATCAGGAGTATATTAGGCGGAAGACAGCCCAGG
TGGCAGCCATTGGTGACTGAAAGCTTTCTAGACCAT

BS14627.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RA 804 CG7059-PA 1..804 17..820 3990 99.8 Plus
CG7059-RD 789 CG7059-PD 18..789 49..820 3830 99.7 Plus
CG7059-RC 762 CG7059-PC 1..762 59..820 3780 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-RA 1332 CG7059-RA 262..1066 16..820 3995 99.8 Plus
CG7059-RD 1261 CG7059-RD 224..995 49..820 3830 99.7 Plus
CG7059-RC 1238 CG7059-RC 201..972 49..820 3830 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22391368..22391864 161..657 2455 99.6 Plus
3R 32079331 3R 22391919..22392083 656..820 825 100 Plus
3R 32079331 3R 22391194..22391307 49..162 570 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:24:10 has no hits.

BS14627.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:04 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 1..804 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:08 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 258..1066 10..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:29 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 263..1065 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:04 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 258..1066 10..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:49 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
CG7059-RA 263..1065 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:49 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22390042..22390073 17..48 100 -> Plus
3R 22391194..22391306 49..161 100 -> Plus
3R 22391369..22391863 162..656 99 -> Plus
3R 22391920..22392082 657..819 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:29 Download gff for BS14627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18215764..18215795 17..48 100 -> Plus
arm_3R 18216916..18217028 49..161 100 -> Plus
arm_3R 18217091..18217585 162..656 99 -> Plus
arm_3R 18217642..18217804 657..819 100   Plus

BS14627.pep Sequence

Translation from 16 to 819

> BS14627.pep
MVFFKFLKSKLSQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGV
QEALTVAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKED
WRLCERHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFY
TICSNPIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCV
HGTVARALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLG
DQEYIRRKTAQVAAIGD*

BS14627.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7059-PA 267 CG7059-PA 1..267 1..267 1414 100 Plus
CG7059-PD 262 CG7059-PD 7..262 12..267 1360 100 Plus
CG7059-PC 253 CG7059-PC 1..253 15..267 1345 100 Plus
Pglym78-PC 255 CG1721-PC 6..252 20..266 501 41.4 Plus
Pglym78-PB 255 CG1721-PB 6..252 20..266 501 41.4 Plus