Clone Sequence Records
BS14628.3prime Sequence
851 bp (710 high quality bases) assembled on 2006-10-13
> BS14628.3prime
ATGGTCTAGAAAGCTTTTAGCCGCAATAGATTTCGGTGAATACGGGAATG
CGGCAATAGCAGGTGCAGTTCTCGAACTCATTTGCATATTGCGATATTTC
AGCAACGAACCTCTCCAAATTTTGCGGGTTTTTGAATATGTTCTTGTCCA
CAGTCAAATCGTTGTCCACCAGGATTTTCCAGCGTCTCATACTGGCGATG
ACATCGCCGCAGAAGTCGCGTTTACTCTTCTCCGCCGATTTCTTGATGTT
CTGCATAAGCCCCTTGTGCTTTCTGTACGCCCTATTCTTTTCGACCAACG
CCGCATGGGCTTCTCTCTGTGAAGCATCGTAAATCTCGATGATTCTGTAC
ATGCGCCTTTCAATATTCTTGGACATTTTCAGGGCGGCCTCGCACTTTGG
CTTGCATTGGCTCCAATAGCGGGCTCCTTCGAATGGGACTTTGCTGAACT
TGTTGCTCCTCTTGAAAGTTTCCGTATCCTTTCCTCGATCGGCCAGTTCT
TTAGCCAGTTGCGTCTTAACCCTTCCATTGTGGAAGCGAAAATGCAAGCT
GGCCAGCAGCTTCTCTACTCGCGACATGCAGTTTGAGTTCTTGAGCGAAT
ATACACCTGGAATCGCGAAGGTGCGGAGCAGGTGGTGCAGCTTGAAGGCC
ACGCAATTGAGCAGATCCTCGGCGGCGCACACCTGCTTCCTGAGCAATTT
GCTGTGATCGTGAATGGTGCGCCGGCTCTTCCATCCTCGGAATAGGGCCT
GGATCTTGGTGGCCGCCCGATGGTGGTGATCCTGAACCCGCTTCTGCAGC
AGGTTCTCCACTTACCTGAAGTGGGTTTTTCCGGAACGAGAATCCGCGCC
C
BS14628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-PA | 1104 | CG13544-RA | 290..1104 | 831..17 | 3875 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1262 | CG13544-RA | 371..1204 | 850..16 | 4015 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23139452..23139765 | 268..581 | 1525 | 99 | Plus |
2R | 25286936 | 2R | 23139138..23139395 | 16..273 | 1260 | 99.2 | Plus |
2R | 25286936 | 2R | 23139820..23140087 | 582..850 | 1220 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:57:32 has no hits.
BS14628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:32 Download gff for
BS14628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-PA | 270..1104 | 17..851 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:42 Download gff for
BS14628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 369..1204 | 16..851 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:44 Download gff for
BS14628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 369..1204 | 16..851 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:44 Download gff for
BS14628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23139138..23139395 | 16..273 | 99 | <- | Plus |
2R | 23139458..23139765 | 274..581 | 99 | <- | Plus |
2R | 23139820..23140087 | 582..851 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:42 Download gff for
BS14628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026661..19026918 | 16..273 | 99 | <- | Plus |
arm_2R | 19026981..19027288 | 274..581 | 99 | <- | Plus |
arm_2R | 19027343..19027610 | 582..851 | 97 | | Plus |
BS14628.5prime Sequence
773 bp (763 high quality bases) assembled on 2006-10-13
> BS14628.5prime
GAAGTTATCAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGA
CTCGGAGGGCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACC
GAGTCCCAAATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAAT
TTCGCGAACCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCC
GAACTATCCAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAG
GATCTAAGAAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTC
GGTCCGAAAAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGG
TTCAGGATCACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGA
GGATGGAAGAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAA
GCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGC
ACCACCTGCTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAAC
TCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCG
CTTCCACAATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATC
GAGGAAAGGATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTC
CCATTCGAAGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGC
CGCCCTGAAAATGTCCAAGAATA
BS14628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-PA | 1104 | CG13544-RA | 1..757 | 17..773 | 3685 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1262 | CG13544-RA | 100..856 | 17..773 | 3725 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23139820..23140219 | 555..156 | 1970 | 99.5 | Minus |
2R | 25286936 | 2R | 23139548..23139765 | 773..556 | 1060 | 99.1 | Minus |
2R | 25286936 | 2R | 23140408..23140478 | 87..17 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23140284..23140353 | 156..87 | 350 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NOF | 4347 | NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). | 2537..2610 | 207..276 | 108 | 64.9 | Plus |
BS14628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:33 Download gff for
BS14628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:36 Download gff for
BS14628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 95..855 | 8..772 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:46 Download gff for
BS14628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 95..855 | 8..772 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:46 Download gff for
BS14628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23139549..23139765 | 556..772 | 99 | <- | Minus |
2R | 23139820..23140218 | 157..555 | 99 | <- | Minus |
2R | 23140284..23140352 | 88..156 | 100 | <- | Minus |
2R | 23140408..23140483 | 8..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:36 Download gff for
BS14628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19027072..19027288 | 556..772 | 99 | <- | Minus |
arm_2R | 19027343..19027741 | 157..555 | 99 | <- | Minus |
arm_2R | 19027807..19027875 | 88..156 | 100 | <- | Minus |
arm_2R | 19027931..19028006 | 8..87 | 95 | | Minus |
BS14628.complete Sequence
1136 bp assembled on 2006-11-01
GenBank Submission: FJ637729
> BS14628.complete
GAAGTTATCAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGA
CTCGGAGGGCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACC
GAGTCCCAAATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAAT
TTCGCGAACCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCC
GAACTATCCAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAG
GATCTAAGAAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTC
GGTCCGAAAAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGG
TTCAGGATCACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGA
GGATGGAAGAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAA
GCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGC
ACCACCTGCTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAAC
TCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCG
CTTCCACAATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATC
GAGGAAAGGATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTC
CCATTCGAAGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGC
CGCCCTGAAAATGTCCAAGAATATTGAAAGGCGCATGTACAGAATCATCG
AGATTTACGATGCTTCACAGAGAGAAGCCCATGCGGCGTTGGTCGAAAAG
AATAGGGCGTACAGAAAGCACAAGGGGCTTATGCAGAACATCAAGAAATC
GGCGGAGAAGAGTAAACGCGACTTCTGCGGCGATGTCATCGCCAGTATGA
GACGCTGGAAAATCCTGGTGGACAACGATTTGACTGTGGACAAGAACATA
TTCAAAAACCCGCAAAATTTGGAGAGGTTCGTTGCTGAAATATCGCAATA
TGCAAATGAGTTCGAGAACTGCACCTGCTATTGCCGCATTCCCGTATTCA
CCGAAATCTATTGCGGCTAAAAGCTTTCTAGACCAT
BS14628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1104 | CG13544-PA | 1..1104 | 17..1120 | 5430 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1262 | CG13544-RA | 100..1204 | 17..1121 | 5435 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23139820..23140219 | 555..156 | 1970 | 99.5 | Minus |
2R | 25286936 | 2R | 23139452..23139765 | 869..556 | 1525 | 99 | Minus |
2R | 25286936 | 2R | 23139138..23139395 | 1121..864 | 1260 | 99.2 | Minus |
2R | 25286936 | 2R | 23140408..23140478 | 87..17 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23140284..23140353 | 156..87 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:47 has no hits.
BS14628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:52 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 1..1104 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:41 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 102..1211 | 8..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:21 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 105..1201 | 22..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:52 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 102..1211 | 8..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:04 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 105..1201 | 22..1118 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:04 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23139458..23139765 | 556..863 | 99 | <- | Minus |
2R | 23139820..23140218 | 157..555 | 99 | <- | Minus |
2R | 23140284..23140352 | 88..156 | 100 | <- | Minus |
2R | 23140408..23140473 | 22..87 | 100 | | Minus |
2R | 23139141..23139395 | 864..1118 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:21 Download gff for
BS14628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026664..19026918 | 864..1118 | 99 | <- | Minus |
arm_2R | 19026981..19027288 | 556..863 | 99 | <- | Minus |
arm_2R | 19027343..19027741 | 157..555 | 99 | <- | Minus |
arm_2R | 19027807..19027875 | 88..156 | 100 | <- | Minus |
arm_2R | 19027931..19027996 | 22..87 | 100 | | Minus |
BS14628.pep Sequence
Translation from 16 to 1119
> BS14628.pep
MFSGLIPMMQQTRRATVPLGGDSRSGNTESQIGSSKSSNCRLHLISRTGK
LLLDYKQYKAARTIQNNWRKFYFRKYFKDLRKAVITIQRWWRGFSVRKNH
FRYVENLLQKRVQDHHHRAATKIQALFRGWKSRRTIHDHSKLLRKQVCAA
EDLLNCVAFKLHHLLRTFAIPGVYSLKNSNCMSRVEKLLASLHFRFHNGR
VKTQLAKELADRGKDTETFKRSNKFSKVPFEGARYWSQCKPKCEAALKMS
KNIERRMYRIIEIYDASQREAHAALVEKNRAYRKHKGLMQNIKKSAEKSK
RDFCGDVIASMRRWKILVDNDLTVDKNIFKNPQNLERFVAEISQYANEFE
NCTCYCRIPVFTEIYCG*
BS14628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-PA | 367 | CG13544-PA | 1..367 | 1..367 | 1944 | 100 | Plus |
CG31735-PC | 312 | CG31735-PC | 4..294 | 60..349 | 486 | 36.4 | Plus |
CG31735-PA | 312 | CG31735-PA | 4..294 | 60..349 | 486 | 36.4 | Plus |
CG12448-PC | 352 | CG12448-PC | 40..351 | 34..366 | 428 | 30.4 | Plus |
CG18063-PD | 371 | CG18063-PD | 43..355 | 45..354 | 398 | 30.6 | Plus |