Clone BS14628 Report

Search the DGRC for BS14628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG13544-RA
Protein status:BS14628.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14628.3prime Sequence

851 bp (710 high quality bases) assembled on 2006-10-13

> BS14628.3prime
ATGGTCTAGAAAGCTTTTAGCCGCAATAGATTTCGGTGAATACGGGAATG
CGGCAATAGCAGGTGCAGTTCTCGAACTCATTTGCATATTGCGATATTTC
AGCAACGAACCTCTCCAAATTTTGCGGGTTTTTGAATATGTTCTTGTCCA
CAGTCAAATCGTTGTCCACCAGGATTTTCCAGCGTCTCATACTGGCGATG
ACATCGCCGCAGAAGTCGCGTTTACTCTTCTCCGCCGATTTCTTGATGTT
CTGCATAAGCCCCTTGTGCTTTCTGTACGCCCTATTCTTTTCGACCAACG
CCGCATGGGCTTCTCTCTGTGAAGCATCGTAAATCTCGATGATTCTGTAC
ATGCGCCTTTCAATATTCTTGGACATTTTCAGGGCGGCCTCGCACTTTGG
CTTGCATTGGCTCCAATAGCGGGCTCCTTCGAATGGGACTTTGCTGAACT
TGTTGCTCCTCTTGAAAGTTTCCGTATCCTTTCCTCGATCGGCCAGTTCT
TTAGCCAGTTGCGTCTTAACCCTTCCATTGTGGAAGCGAAAATGCAAGCT
GGCCAGCAGCTTCTCTACTCGCGACATGCAGTTTGAGTTCTTGAGCGAAT
ATACACCTGGAATCGCGAAGGTGCGGAGCAGGTGGTGCAGCTTGAAGGCC
ACGCAATTGAGCAGATCCTCGGCGGCGCACACCTGCTTCCTGAGCAATTT
GCTGTGATCGTGAATGGTGCGCCGGCTCTTCCATCCTCGGAATAGGGCCT
GGATCTTGGTGGCCGCCCGATGGTGGTGATCCTGAACCCGCTTCTGCAGC
AGGTTCTCCACTTACCTGAAGTGGGTTTTTCCGGAACGAGAATCCGCGCC
C

BS14628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-PA 1104 CG13544-RA 290..1104 831..17 3875 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-RA 1262 CG13544-RA 371..1204 850..16 4015 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23139452..23139765 268..581 1525 99 Plus
2R 25286936 2R 23139138..23139395 16..273 1260 99.2 Plus
2R 25286936 2R 23139820..23140087 582..850 1220 97.8 Plus
Blast to na_te.dros performed on 2015-02-12 03:57:32 has no hits.

BS14628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:32 Download gff for BS14628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13544-PA 270..1104 17..851 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:42 Download gff for BS14628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 369..1204 16..851 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:44 Download gff for BS14628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 369..1204 16..851 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:44 Download gff for BS14628.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23139138..23139395 16..273 99 <- Plus
2R 23139458..23139765 274..581 99 <- Plus
2R 23139820..23140087 582..851 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:42 Download gff for BS14628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19026661..19026918 16..273 99 <- Plus
arm_2R 19026981..19027288 274..581 99 <- Plus
arm_2R 19027343..19027610 582..851 97   Plus

BS14628.5prime Sequence

773 bp (763 high quality bases) assembled on 2006-10-13

> BS14628.5prime
GAAGTTATCAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGA
CTCGGAGGGCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACC
GAGTCCCAAATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAAT
TTCGCGAACCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCC
GAACTATCCAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAG
GATCTAAGAAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTC
GGTCCGAAAAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGG
TTCAGGATCACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGA
GGATGGAAGAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAA
GCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGC
ACCACCTGCTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAAC
TCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCG
CTTCCACAATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATC
GAGGAAAGGATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTC
CCATTCGAAGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGC
CGCCCTGAAAATGTCCAAGAATA

BS14628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-PA 1104 CG13544-RA 1..757 17..773 3685 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-RA 1262 CG13544-RA 100..856 17..773 3725 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23139820..23140219 555..156 1970 99.5 Minus
2R 25286936 2R 23139548..23139765 773..556 1060 99.1 Minus
2R 25286936 2R 23140408..23140478 87..17 355 100 Minus
2R 25286936 2R 23140284..23140353 156..87 350 100 Minus
Blast to na_te.dros performed 2015-02-10 21:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 2537..2610 207..276 108 64.9 Plus

BS14628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:33 Download gff for BS14628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13544-PA 1..756 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:36 Download gff for BS14628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 95..855 8..772 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:46 Download gff for BS14628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 95..855 8..772 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:46 Download gff for BS14628.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23139549..23139765 556..772 99 <- Minus
2R 23139820..23140218 157..555 99 <- Minus
2R 23140284..23140352 88..156 100 <- Minus
2R 23140408..23140483 8..87 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:36 Download gff for BS14628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19027072..19027288 556..772 99 <- Minus
arm_2R 19027343..19027741 157..555 99 <- Minus
arm_2R 19027807..19027875 88..156 100 <- Minus
arm_2R 19027931..19028006 8..87 95   Minus

BS14628.complete Sequence

1136 bp assembled on 2006-11-01

GenBank Submission: FJ637729

> BS14628.complete
GAAGTTATCAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGA
CTCGGAGGGCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACC
GAGTCCCAAATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAAT
TTCGCGAACCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCC
GAACTATCCAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAG
GATCTAAGAAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTC
GGTCCGAAAAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGG
TTCAGGATCACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGA
GGATGGAAGAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAA
GCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGC
ACCACCTGCTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAAC
TCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCG
CTTCCACAATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATC
GAGGAAAGGATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTC
CCATTCGAAGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGC
CGCCCTGAAAATGTCCAAGAATATTGAAAGGCGCATGTACAGAATCATCG
AGATTTACGATGCTTCACAGAGAGAAGCCCATGCGGCGTTGGTCGAAAAG
AATAGGGCGTACAGAAAGCACAAGGGGCTTATGCAGAACATCAAGAAATC
GGCGGAGAAGAGTAAACGCGACTTCTGCGGCGATGTCATCGCCAGTATGA
GACGCTGGAAAATCCTGGTGGACAACGATTTGACTGTGGACAAGAACATA
TTCAAAAACCCGCAAAATTTGGAGAGGTTCGTTGCTGAAATATCGCAATA
TGCAAATGAGTTCGAGAACTGCACCTGCTATTGCCGCATTCCCGTATTCA
CCGAAATCTATTGCGGCTAAAAGCTTTCTAGACCAT

BS14628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-RA 1104 CG13544-PA 1..1104 17..1120 5430 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-RA 1262 CG13544-RA 100..1204 17..1121 5435 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23139820..23140219 555..156 1970 99.5 Minus
2R 25286936 2R 23139452..23139765 869..556 1525 99 Minus
2R 25286936 2R 23139138..23139395 1121..864 1260 99.2 Minus
2R 25286936 2R 23140408..23140478 87..17 355 100 Minus
2R 25286936 2R 23140284..23140353 156..87 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:02:47 has no hits.

BS14628.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:52 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 1..1104 17..1120 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:41 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 102..1211 8..1121 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:21 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 105..1201 22..1118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:52 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 102..1211 8..1121 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:04 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 105..1201 22..1118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:04 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23139458..23139765 556..863 99 <- Minus
2R 23139820..23140218 157..555 99 <- Minus
2R 23140284..23140352 88..156 100 <- Minus
2R 23140408..23140473 22..87 100   Minus
2R 23139141..23139395 864..1118 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:21 Download gff for BS14628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19026664..19026918 864..1118 99 <- Minus
arm_2R 19026981..19027288 556..863 99 <- Minus
arm_2R 19027343..19027741 157..555 99 <- Minus
arm_2R 19027807..19027875 88..156 100 <- Minus
arm_2R 19027931..19027996 22..87 100   Minus

BS14628.pep Sequence

Translation from 16 to 1119

> BS14628.pep
MFSGLIPMMQQTRRATVPLGGDSRSGNTESQIGSSKSSNCRLHLISRTGK
LLLDYKQYKAARTIQNNWRKFYFRKYFKDLRKAVITIQRWWRGFSVRKNH
FRYVENLLQKRVQDHHHRAATKIQALFRGWKSRRTIHDHSKLLRKQVCAA
EDLLNCVAFKLHHLLRTFAIPGVYSLKNSNCMSRVEKLLASLHFRFHNGR
VKTQLAKELADRGKDTETFKRSNKFSKVPFEGARYWSQCKPKCEAALKMS
KNIERRMYRIIEIYDASQREAHAALVEKNRAYRKHKGLMQNIKKSAEKSK
RDFCGDVIASMRRWKILVDNDLTVDKNIFKNPQNLERFVAEISQYANEFE
NCTCYCRIPVFTEIYCG*

BS14628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-PA 367 CG13544-PA 1..367 1..367 1944 100 Plus
CG31735-PC 312 CG31735-PC 4..294 60..349 486 36.4 Plus
CG31735-PA 312 CG31735-PA 4..294 60..349 486 36.4 Plus
CG12448-PC 352 CG12448-PC 40..351 34..366 428 30.4 Plus
CG18063-PD 371 CG18063-PD 43..355 45..354 398 30.6 Plus