Clone BS14629 Report

Search the DGRC for BS14629

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG1690-RA
Protein status:BS14629.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14629.5prime Sequence

429 bp (429 high quality bases) assembled on 2006-10-13

> BS14629.5prime
GAAGTTATCAGTCGACATGGATGCCGCCGAGGGTCAAAGCTTGGTGATCA
AAATGGCGCAAAAGAACAAGGAGACCCAGACTGTGAAGCTGGTGCCCGGA
GGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATGGGCCAGCAGG
GATTCCATTTGGGGCTAGTCCCATGATCCCACCGCCGCCCGTTCCGAATC
ACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCAGCTGTACCGC
CGCGCCTGCCAGATGAAGGGCATCCGGGTGGAGCGGGTCTCTGAGATCCG
CGAGGAGGAGGACGACTCGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCA
TCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAACCCATACCGT
TTTATCAACTTTTAAAAGCTTTCTAGACC

BS14629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-PA 399 CG1690-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-RB 1708 CG1690-RB 200..599 17..416 2000 100 Plus
CG1690-RA 1073 CG1690-RA 200..599 17..416 2000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9757402..9757747 416..71 1730 100 Minus
2R 25286936 2R 9757815..9757869 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:57:39 has no hits.

BS14629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:33 Download gff for BS14629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1690-PA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:44 Download gff for BS14629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..603 17..421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:57 Download gff for BS14629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..603 17..421 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:57 Download gff for BS14629.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9757398..9757746 72..421 99 <- Minus
2R 9757815..9757869 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:44 Download gff for BS14629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5645320..5645374 17..71 100   Minus
arm_2R 5644903..5645251 72..421 99 <- Minus

BS14629.3prime Sequence

429 bp (429 high quality bases) assembled on 2006-10-13

> BS14629.3prime
ATGGTCTAGAAAGCTTTTAAAAGTTGATAAAACGGTATGGGTTGAAGCTT
TTCATCTCGTCCAGGGTGTAGCGGTAGCGGATGCCCTTCGAAGGCTCCTC
CTCGGAGCCGTTCGAGTCGTCCTCCTCCTCGCGGATCTCAGAGACCCGCT
CCACCCGGATGCCCTTCATCTGGCAGGCGCGGCGGTACAGCTGCTCCTCC
CGGTCCATGTAAAACTGGCACGATACGCTGTGATTCGGAACGGGCGGCGG
TGGGATCATGGGACTAGCCCCAAATGGAATCCCTGCTGGCCCATACGTAG
CCGGGGCAAACCAGTTGTTGACCAGACCGCCTCCGGGCACCAGCTTCACA
GTCTGGGTCTCCTTGTTCTTTTGCGCCATTTTGATCACCAAGCTTTGACC
CTCGGCGGCATCCATGTCGACTGATAACT

BS14629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-PA 399 CG1690-RA 1..399 415..17 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-RB 1708 CG1690-RB 200..599 415..16 2000 100 Minus
CG1690-RA 1073 CG1690-RA 200..599 415..16 2000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9757402..9757747 16..361 1730 100 Plus
2R 25286936 2R 9757815..9757869 361..415 275 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:32:06 has no hits.

BS14629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:33 Download gff for BS14629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1690-PA 1..399 17..415 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:38 Download gff for BS14629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..603 11..415 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:50 Download gff for BS14629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..603 11..415 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:50 Download gff for BS14629.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9757398..9757746 11..360 99 <- Plus
2R 9757815..9757869 361..415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:38 Download gff for BS14629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5644903..5645251 11..360 99 <- Plus
arm_2R 5645320..5645374 361..415 100   Plus

BS14629.complete Sequence

431 bp assembled on 2006-11-01

GenBank Submission: FJ637730

> BS14629.complete
GAAGTTATCAGTCGACATGGATGCCGCCGAGGGTCAAAGCTTGGTGATCA
AAATGGCGCAAAAGAACAAGGAGACCCAGACTGTGAAGCTGGTGCCCGGA
GGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATGGGCCAGCAGG
GATTCCATTTGGGGCTAGTCCCATGATCCCACCGCCGCCCGTTCCGAATC
ACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCAGCTGTACCGC
CGCGCCTGCCAGATGAAGGGCATCCGGGTGGAGCGGGTCTCTGAGATCCG
CGAGGAGGAGGACGACTCGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCA
TCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAACCCATACCGT
TTTATCAACTTTTAAAAGCTTTCTAGACCAT

BS14629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-RB 399 CG1690-PB 1..399 17..415 1995 100 Plus
CG1690-RA 399 CG1690-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-RB 1708 CG1690-RB 200..599 17..416 2000 100 Plus
CG1690-RA 1073 CG1690-RA 200..599 17..416 2000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9757402..9757747 416..71 1730 100 Minus
2R 25286936 2R 9757815..9757869 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:49:39 has no hits.

BS14629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:22 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:13 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..603 17..421 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:25 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..596 17..413 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:23 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..603 17..421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:52 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 200..596 17..413 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:52 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9757405..9757746 72..413 100 <- Minus
2R 9757815..9757869 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:25 Download gff for BS14629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5644910..5645251 72..413 100 <- Minus
arm_2R 5645320..5645374 17..71 100   Minus

BS14629.pep Sequence

Translation from 16 to 414

> BS14629.pep
MDAAEGQSLVIKMAQKNKETQTVKLVPGGGLVNNWFAPATYGPAGIPFGA
SPMIPPPPVPNHSVSCQFYMDREEQLYRRACQMKGIRVERVSEIREEEDD
SNGSEEEPSKGIRYRYTLDEMKSFNPYRFINF*

BS14629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-PB 132 CG1690-PB 1..132 1..132 704 100 Plus
CG1690-PA 132 CG1690-PA 1..132 1..132 704 100 Plus