Clone Sequence Records
BS14629.5prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-13
> BS14629.5prime
GAAGTTATCAGTCGACATGGATGCCGCCGAGGGTCAAAGCTTGGTGATCA
AAATGGCGCAAAAGAACAAGGAGACCCAGACTGTGAAGCTGGTGCCCGGA
GGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATGGGCCAGCAGG
GATTCCATTTGGGGCTAGTCCCATGATCCCACCGCCGCCCGTTCCGAATC
ACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCAGCTGTACCGC
CGCGCCTGCCAGATGAAGGGCATCCGGGTGGAGCGGGTCTCTGAGATCCG
CGAGGAGGAGGACGACTCGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCA
TCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAACCCATACCGT
TTTATCAACTTTTAAAAGCTTTCTAGACC
BS14629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-PA | 399 | CG1690-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-RB | 1708 | CG1690-RB | 200..599 | 17..416 | 2000 | 100 | Plus |
CG1690-RA | 1073 | CG1690-RA | 200..599 | 17..416 | 2000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9757402..9757747 | 416..71 | 1730 | 100 | Minus |
2R | 25286936 | 2R | 9757815..9757869 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:57:39 has no hits.
BS14629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:33 Download gff for
BS14629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-PA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:44 Download gff for
BS14629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..603 | 17..421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:57 Download gff for
BS14629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..603 | 17..421 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:57 Download gff for
BS14629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9757398..9757746 | 72..421 | 99 | <- | Minus |
2R | 9757815..9757869 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:44 Download gff for
BS14629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5645320..5645374 | 17..71 | 100 | | Minus |
arm_2R | 5644903..5645251 | 72..421 | 99 | <- | Minus |
BS14629.3prime Sequence
429 bp (429 high quality bases) assembled on 2006-10-13
> BS14629.3prime
ATGGTCTAGAAAGCTTTTAAAAGTTGATAAAACGGTATGGGTTGAAGCTT
TTCATCTCGTCCAGGGTGTAGCGGTAGCGGATGCCCTTCGAAGGCTCCTC
CTCGGAGCCGTTCGAGTCGTCCTCCTCCTCGCGGATCTCAGAGACCCGCT
CCACCCGGATGCCCTTCATCTGGCAGGCGCGGCGGTACAGCTGCTCCTCC
CGGTCCATGTAAAACTGGCACGATACGCTGTGATTCGGAACGGGCGGCGG
TGGGATCATGGGACTAGCCCCAAATGGAATCCCTGCTGGCCCATACGTAG
CCGGGGCAAACCAGTTGTTGACCAGACCGCCTCCGGGCACCAGCTTCACA
GTCTGGGTCTCCTTGTTCTTTTGCGCCATTTTGATCACCAAGCTTTGACC
CTCGGCGGCATCCATGTCGACTGATAACT
BS14629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-PA | 399 | CG1690-RA | 1..399 | 415..17 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-RB | 1708 | CG1690-RB | 200..599 | 415..16 | 2000 | 100 | Minus |
CG1690-RA | 1073 | CG1690-RA | 200..599 | 415..16 | 2000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9757402..9757747 | 16..361 | 1730 | 100 | Plus |
2R | 25286936 | 2R | 9757815..9757869 | 361..415 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:32:06 has no hits.
BS14629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:33 Download gff for
BS14629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-PA | 1..399 | 17..415 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:38 Download gff for
BS14629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..603 | 11..415 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:50 Download gff for
BS14629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..603 | 11..415 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:50 Download gff for
BS14629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9757398..9757746 | 11..360 | 99 | <- | Plus |
2R | 9757815..9757869 | 361..415 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:38 Download gff for
BS14629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5644903..5645251 | 11..360 | 99 | <- | Plus |
arm_2R | 5645320..5645374 | 361..415 | 100 | | Plus |
BS14629.complete Sequence
431 bp assembled on 2006-11-01
GenBank Submission: FJ637730
> BS14629.complete
GAAGTTATCAGTCGACATGGATGCCGCCGAGGGTCAAAGCTTGGTGATCA
AAATGGCGCAAAAGAACAAGGAGACCCAGACTGTGAAGCTGGTGCCCGGA
GGCGGTCTGGTCAACAACTGGTTTGCCCCGGCTACGTATGGGCCAGCAGG
GATTCCATTTGGGGCTAGTCCCATGATCCCACCGCCGCCCGTTCCGAATC
ACAGCGTATCGTGCCAGTTTTACATGGACCGGGAGGAGCAGCTGTACCGC
CGCGCCTGCCAGATGAAGGGCATCCGGGTGGAGCGGGTCTCTGAGATCCG
CGAGGAGGAGGACGACTCGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCA
TCCGCTACCGCTACACCCTGGACGAGATGAAAAGCTTCAACCCATACCGT
TTTATCAACTTTTAAAAGCTTTCTAGACCAT
BS14629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-RB | 399 | CG1690-PB | 1..399 | 17..415 | 1995 | 100 | Plus |
CG1690-RA | 399 | CG1690-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-RB | 1708 | CG1690-RB | 200..599 | 17..416 | 2000 | 100 | Plus |
CG1690-RA | 1073 | CG1690-RA | 200..599 | 17..416 | 2000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9757402..9757747 | 416..71 | 1730 | 100 | Minus |
2R | 25286936 | 2R | 9757815..9757869 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:49:39 has no hits.
BS14629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:22 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 1..399 | 17..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:13 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..603 | 17..421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:25 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..596 | 17..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:23 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..603 | 17..421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:52 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1690-RA | 200..596 | 17..413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:52 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9757405..9757746 | 72..413 | 100 | <- | Minus |
2R | 9757815..9757869 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:25 Download gff for
BS14629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5644910..5645251 | 72..413 | 100 | <- | Minus |
arm_2R | 5645320..5645374 | 17..71 | 100 | | Minus |
BS14629.pep Sequence
Translation from 16 to 414
> BS14629.pep
MDAAEGQSLVIKMAQKNKETQTVKLVPGGGLVNNWFAPATYGPAGIPFGA
SPMIPPPPVPNHSVSCQFYMDREEQLYRRACQMKGIRVERVSEIREEEDD
SNGSEEEPSKGIRYRYTLDEMKSFNPYRFINF*
BS14629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1690-PB | 132 | CG1690-PB | 1..132 | 1..132 | 704 | 100 | Plus |
CG1690-PA | 132 | CG1690-PA | 1..132 | 1..132 | 704 | 100 | Plus |