Clone BS14630 Report

Search the DGRC for BS14630

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG17991-RA
Protein status:BS14630.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14630.3prime Sequence

796 bp (727 high quality bases) assembled on 2006-10-13

> BS14630.3prime
ATGGTCTAGAAAGCTTCTAGTGTCCGTCTGCCTCCGCTAGGTTTTCCTTC
GTGTAATCCAAAACACGACGCTTCATACGACAGATGTATTGGCTATGCAT
GAGGTACATTTTGAGGAATCCCTTGATCGCTATGAAAGTCAATCCCCCAA
GAAGAGTTTGTTGCAATCTATCGTCGACAGAGCTGTAAAGAACTCTACCC
ACGTACATGGATATGGTGGGCAAGAGGATGGCTCCACAGACCACCCGCGA
TGCCGAATATTCGGTCATTGGTGCAGAAGGGTATGGTTCGGTCTGGTGGT
CATATTTCCGTCCTAGGCACATCATTGAAAGACTTCGCAGCAATGAATAA
CATATTCTAATGAAGCGCAACAGGGCATCTTCCCAGGGAATTAAGCGTCC
AAGTATCAGAACTACCGAGATTAATGGGAATCCGACCAGAACAACCAACA
GGTCTCCCGATTGAATTATTTGATGAACGTGACCTTCCTGACCAGTGATC
TGCAAATATGTTTTTGCTCCGAATGAAACCGCTGACCAATAGGCAAAGAC
CACAGTGAAGACATTGGCCAGGCAATTATATAAGTTTGTTAGGATAAGAT
CGTTGGTCAGCTCCAAAGCCCTATCGAAAATCCAGAGATTCGGGTATGCA
ATGGTGTACTCCGTTTGGCATTGTGGACAGGAAACGGCTTGCAGATTGTT
GTTTATTCGGGTCTTCTCGTCGATCCAGAGGGAAATGCAGCTCTGGTGCA
CCCACTTATTGGTTCCTCGGCAGAGACATGGATTCACCCAAGCCTG

BS14630.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-PA 885 CG17991-RA 106..885 796..17 3825 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-RA 1064 CG17991-RA 171..950 796..17 3855 99.6 Minus
CG9855-RC 1718 CG9855-RC 406..549 794..651 195 76.6 Minus
CG9855-RA 1533 CG9855-RA 406..549 794..651 195 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27241437..27242216 796..17 3855 99.6 Minus
3R 32079331 3R 4397260..4397403 651..794 195 75.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:06:55 has no hits.

BS14630.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:34 Download gff for BS14630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17991-PA 106..885 17..796 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:32 Download gff for BS14630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 171..950 17..796 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:01 Download gff for BS14630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 171..950 17..796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:01 Download gff for BS14630.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27241437..27242216 17..796 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:32 Download gff for BS14630.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23067159..23067938 17..796 99   Minus

BS14630.5prime Sequence

827 bp (723 high quality bases) assembled on 2006-10-13

> BS14630.5prime
GAAGTTATCAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAG
CTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAG
ACCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCG
AGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACG
AGAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGC
CAAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGC
TTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGG
CCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGA
GCAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAAT
AATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCT
CGGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTG
CGCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTG
CCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAA
TGACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCC
ACCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAG
ATTGCAACCAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAAGGAT
TCCTCAAAATGTACCCCATGCATAGCC

BS14630.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-PA 885 CG17991-RA 1..811 17..827 3905 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-RA 1064 CG17991-RA 66..876 17..827 3965 99.3 Plus
CG9855-RC 1718 CG9855-RC 355..549 73..267 210 75.1 Plus
CG9855-RA 1533 CG9855-RA 355..549 73..267 210 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27241332..27242142 17..827 3965 99.3 Plus
3R 32079331 3R 4397260..4397454 267..73 210 73.8 Minus
Blast to na_te.dros performed on 2015-01-31 10:14:45 has no hits.

BS14630.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:34 Download gff for BS14630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17991-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:37 Download gff for BS14630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 59..876 7..827 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:48 Download gff for BS14630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 59..876 7..827 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:48 Download gff for BS14630.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27241325..27242142 7..827 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:37 Download gff for BS14630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23067047..23067864 7..827 98   Plus

BS14630.complete Sequence

917 bp assembled on 2006-11-01

GenBank Submission: FJ637731

> BS14630.complete
GAAGTTATCAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAG
CTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAG
ACCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCG
AGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACG
AGAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGC
CAAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGC
TTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGG
CCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGA
GCAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAAT
AATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCT
CGGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTG
CGCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTG
CCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAA
TGACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCC
ACCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAG
ATTGCAACAAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAGGGAT
TCCTCAAAATGTACCTCATGCATAGCCAATACATCTGTCGTATGAAGCGT
CGTGTTTTGGATTACACGAAGGAAAACCTAGCGGAGGCAGACGGACACTA
GAAGCTTTCTAGACCAT

BS14630.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-RA 885 CG17991-PA 1..885 17..901 4380 99.7 Plus
CG9855-RC 1149 CG9855-PC 183..377 73..267 210 73.8 Plus
CG9855-RA 1149 CG9855-PA 183..377 73..267 210 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-RA 1064 CG17991-RA 66..950 17..901 4380 99.7 Plus
CG9855-RC 1718 CG9855-RC 355..549 73..267 210 73.8 Plus
CG9855-RA 1533 CG9855-RA 355..549 73..267 210 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27241332..27242216 17..901 4380 99.7 Plus
3R 32079331 3R 4397260..4397454 267..73 210 73.8 Minus
Blast to na_te.dros performed on 2014-11-27 23:58:10 has no hits.

BS14630.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:05 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:10 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 59..950 7..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:35 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 66..950 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:05 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 59..950 7..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:51 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 66..950 17..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:51 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27241332..27242216 17..901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:35 Download gff for BS14630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23067054..23067938 17..901 99   Plus

BS14630.pep Sequence

Translation from 16 to 900

> BS14630.pep
MASNVAAPQASAGGDSTELERCCWICFETDKEAGRQAWVNPCLCRGTNKW
VHQSCISLWIDEKTRINNNLQAVSCPQCQTEYTIAYPNLWIFDRALELTN
DLILTNLYNCLANVFTVVFAYWSAVSFGAKTYLQITGQEGHVHQIIQSGD
LLVVLVGFPLISVVLILGRLIPWEDALLRFIRICYSLLRSLSMMCLGRKY
DHQTEPYPSAPMTEYSASRVVCGAILLPTISMYVGRVLYSSVDDRLQQTL
LGGLTFIAIKGFLKMYLMHSQYICRMKRRVLDYTKENLAEADGH*

BS14630.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-PA 294 CG17991-PA 1..294 1..294 1563 100 Plus
CG9855-PC 382 CG9855-PC 46..335 2..288 715 52.4 Plus
CG9855-PA 382 CG9855-PA 46..335 2..288 715 52.4 Plus
CG16781-PA 383 CG16781-PA 38..332 20..294 493 37.7 Plus
CG16781-PB 386 CG16781-PB 41..335 20..294 493 37.7 Plus