Clone Sequence Records
BS14630.3prime Sequence
796 bp (727 high quality bases) assembled on 2006-10-13
> BS14630.3prime
ATGGTCTAGAAAGCTTCTAGTGTCCGTCTGCCTCCGCTAGGTTTTCCTTC
GTGTAATCCAAAACACGACGCTTCATACGACAGATGTATTGGCTATGCAT
GAGGTACATTTTGAGGAATCCCTTGATCGCTATGAAAGTCAATCCCCCAA
GAAGAGTTTGTTGCAATCTATCGTCGACAGAGCTGTAAAGAACTCTACCC
ACGTACATGGATATGGTGGGCAAGAGGATGGCTCCACAGACCACCCGCGA
TGCCGAATATTCGGTCATTGGTGCAGAAGGGTATGGTTCGGTCTGGTGGT
CATATTTCCGTCCTAGGCACATCATTGAAAGACTTCGCAGCAATGAATAA
CATATTCTAATGAAGCGCAACAGGGCATCTTCCCAGGGAATTAAGCGTCC
AAGTATCAGAACTACCGAGATTAATGGGAATCCGACCAGAACAACCAACA
GGTCTCCCGATTGAATTATTTGATGAACGTGACCTTCCTGACCAGTGATC
TGCAAATATGTTTTTGCTCCGAATGAAACCGCTGACCAATAGGCAAAGAC
CACAGTGAAGACATTGGCCAGGCAATTATATAAGTTTGTTAGGATAAGAT
CGTTGGTCAGCTCCAAAGCCCTATCGAAAATCCAGAGATTCGGGTATGCA
ATGGTGTACTCCGTTTGGCATTGTGGACAGGAAACGGCTTGCAGATTGTT
GTTTATTCGGGTCTTCTCGTCGATCCAGAGGGAAATGCAGCTCTGGTGCA
CCCACTTATTGGTTCCTCGGCAGAGACATGGATTCACCCAAGCCTG
BS14630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-PA | 885 | CG17991-RA | 106..885 | 796..17 | 3825 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 1064 | CG17991-RA | 171..950 | 796..17 | 3855 | 99.6 | Minus |
CG9855-RC | 1718 | CG9855-RC | 406..549 | 794..651 | 195 | 76.6 | Minus |
CG9855-RA | 1533 | CG9855-RA | 406..549 | 794..651 | 195 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27241437..27242216 | 796..17 | 3855 | 99.6 | Minus |
3R | 32079331 | 3R | 4397260..4397403 | 651..794 | 195 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:06:55 has no hits.
BS14630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:34 Download gff for
BS14630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-PA | 106..885 | 17..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:32 Download gff for
BS14630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 171..950 | 17..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:01 Download gff for
BS14630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 171..950 | 17..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:01 Download gff for
BS14630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27241437..27242216 | 17..796 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:32 Download gff for
BS14630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23067159..23067938 | 17..796 | 99 | | Minus |
BS14630.5prime Sequence
827 bp (723 high quality bases) assembled on 2006-10-13
> BS14630.5prime
GAAGTTATCAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAG
CTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAG
ACCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCG
AGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACG
AGAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGC
CAAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGC
TTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGG
CCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGA
GCAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAAT
AATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCT
CGGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTG
CGCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTG
CCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAA
TGACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCC
ACCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAG
ATTGCAACCAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAAGGAT
TCCTCAAAATGTACCCCATGCATAGCC
BS14630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-PA | 885 | CG17991-RA | 1..811 | 17..827 | 3905 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 1064 | CG17991-RA | 66..876 | 17..827 | 3965 | 99.3 | Plus |
CG9855-RC | 1718 | CG9855-RC | 355..549 | 73..267 | 210 | 75.1 | Plus |
CG9855-RA | 1533 | CG9855-RA | 355..549 | 73..267 | 210 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27241332..27242142 | 17..827 | 3965 | 99.3 | Plus |
3R | 32079331 | 3R | 4397260..4397454 | 267..73 | 210 | 73.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:14:45 has no hits.
BS14630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:34 Download gff for
BS14630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:37 Download gff for
BS14630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..876 | 7..827 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:48 Download gff for
BS14630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..876 | 7..827 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:48 Download gff for
BS14630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27241325..27242142 | 7..827 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:37 Download gff for
BS14630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23067047..23067864 | 7..827 | 98 | | Plus |
BS14630.complete Sequence
917 bp assembled on 2006-11-01
GenBank Submission: FJ637731
> BS14630.complete
GAAGTTATCAGTCGACATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAG
CTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAG
ACCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCG
AGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACG
AGAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGC
CAAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGC
TTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGG
CCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGA
GCAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAAT
AATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCT
CGGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTG
CGCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTG
CCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAA
TGACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCC
ACCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAG
ATTGCAACAAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAGGGAT
TCCTCAAAATGTACCTCATGCATAGCCAATACATCTGTCGTATGAAGCGT
CGTGTTTTGGATTACACGAAGGAAAACCTAGCGGAGGCAGACGGACACTA
GAAGCTTTCTAGACCAT
BS14630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 885 | CG17991-PA | 1..885 | 17..901 | 4380 | 99.7 | Plus |
CG9855-RC | 1149 | CG9855-PC | 183..377 | 73..267 | 210 | 73.8 | Plus |
CG9855-RA | 1149 | CG9855-PA | 183..377 | 73..267 | 210 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-RA | 1064 | CG17991-RA | 66..950 | 17..901 | 4380 | 99.7 | Plus |
CG9855-RC | 1718 | CG9855-RC | 355..549 | 73..267 | 210 | 73.8 | Plus |
CG9855-RA | 1533 | CG9855-RA | 355..549 | 73..267 | 210 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27241332..27242216 | 17..901 | 4380 | 99.7 | Plus |
3R | 32079331 | 3R | 4397260..4397454 | 267..73 | 210 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:58:10 has no hits.
BS14630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:05 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:10 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..950 | 7..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:35 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 66..950 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:05 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 59..950 | 7..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:51 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17991-RA | 66..950 | 17..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:51 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27241332..27242216 | 17..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:35 Download gff for
BS14630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23067054..23067938 | 17..901 | 99 | | Plus |
BS14630.pep Sequence
Translation from 16 to 900
> BS14630.pep
MASNVAAPQASAGGDSTELERCCWICFETDKEAGRQAWVNPCLCRGTNKW
VHQSCISLWIDEKTRINNNLQAVSCPQCQTEYTIAYPNLWIFDRALELTN
DLILTNLYNCLANVFTVVFAYWSAVSFGAKTYLQITGQEGHVHQIIQSGD
LLVVLVGFPLISVVLILGRLIPWEDALLRFIRICYSLLRSLSMMCLGRKY
DHQTEPYPSAPMTEYSASRVVCGAILLPTISMYVGRVLYSSVDDRLQQTL
LGGLTFIAIKGFLKMYLMHSQYICRMKRRVLDYTKENLAEADGH*
BS14630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17991-PA | 294 | CG17991-PA | 1..294 | 1..294 | 1563 | 100 | Plus |
CG9855-PC | 382 | CG9855-PC | 46..335 | 2..288 | 715 | 52.4 | Plus |
CG9855-PA | 382 | CG9855-PA | 46..335 | 2..288 | 715 | 52.4 | Plus |
CG16781-PA | 383 | CG16781-PA | 38..332 | 20..294 | 493 | 37.7 | Plus |
CG16781-PB | 386 | CG16781-PB | 41..335 | 20..294 | 493 | 37.7 | Plus |