Clone Sequence Records
BS14633.3prime Sequence
747 bp (747 high quality bases) assembled on 2006-10-13
> BS14633.3prime
ATGGTCTAGAAAGCTTCTACTGACACTTCTTGGTCTTCGGATCTGGTAGT
TTCTGCATCATGAAGCCGGGCGGCGGTGGCTGGATCTTTAGGGTGGTAAG
TCCACCCTTGGGCTCACTGGCAAACCTACCGTTGCGCGGACCAGCGGGCG
GCAACTTGTCATTGCGCAGATCCGCCAGGATGTTGGCCAGACTCTTCTCG
TCCAGGTCCTCGTACATGTCATCGTTGACCGCCAGAACGGGGGCATTCAC
ACAGGCGCCCATGCAGTAATCCTCCTTGAGCGTGAACTGCATGTCCGGCG
TGGTCTGGCCGTGCTCTAGATTGAGCGTTTTCTTGCACGCCTCAAAGATT
TCGTCGCCCCCACGCAATTTGCAGGGCGTCGAGGTGCACACACTGACCAC
ATATTTCCCGCGCGGCTTCATGAAGAACATGGTGTAGAACTGCGCCGCCT
CGAAGGCCTCCATTGGATCTATCTTGATGGTCTCGGCCACGGCCTGAACG
GCACTGATCGAAAGCCATCCCTGCTGCCGCTGGGCAATATCCAGTAGTGG
CAGGAGTGCTCCCTTCCACTCCGCCTGCGGATACCAGGCGAGCAGGGCCT
TCACCCTCCGCTGGTTATCCTTGGAGAACTCGAACTTCAGTGCTTTGCGT
ATTTCAGTGGCATTCACCGGTGCTCCCAAACGGAGAACGGGTGCCAGGTG
GATGCGGCGGATGGGCTGAAACAAGCGCAGCATGTCGACTGATAACT
BS14633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-PA | 717 | CG6485-RA | 1..717 | 733..17 | 3510 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-RA | 843 | CG6485-RA | 83..799 | 733..17 | 3540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17320013..17320729 | 17..733 | 3540 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:55:33 has no hits.
BS14633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:36 Download gff for
BS14633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-PA | 1..717 | 17..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:00 Download gff for
BS14633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 79..804 | 10..737 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:29 Download gff for
BS14633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 79..804 | 10..737 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:29 Download gff for
BS14633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17320008..17320733 | 10..737 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:00 Download gff for
BS14633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17313108..17313833 | 10..737 | 98 | | Plus |
BS14633.5prime Sequence
747 bp (712 high quality bases) assembled on 2006-10-13
> BS14633.5prime
GAAGTTATCAGTCGACATGCTGCGCTTGCTTCAGCCCATCCGCCGCATCC
ACCTGGCACCCGTTCTCCGTTTGGGAGCACCGGTGAATGCCACTGAAATA
CGCAAAGCACTGAAGTTCGAGTTCTCCAAGGATAACCAGCGGAGGGTGAA
GGCCCTGCTCGCCTGGTATCCGCAGGCGGAGTGGAAGGGAGCACTCCTGC
CACTACTGGATATTGCCCAGCGGCAGCAGGGATGGCTTTCGATCAGTGCC
GTTCAGGCCGTGGCCGAGACCATCAAGATAGATCCAATGGAGGCCTTCGA
GGCGGCGCAGTTCTACACCATGTTCTTCATGAAGCCGCGCGGGAAATATG
TGGTCAGTGTGTGCACCTCGACGCCCTGCAAATTGCGTGGGGGCGACGAA
ATCTTTGAGGCGTGCAAGAAAACGCTCAATCTAGAGCACGGCCAGACCAC
GCCGGACATGCAGTTCACGCTCAAGGAGGATTACTGCATGGGCGCCTGTG
TGAATGCCCCCGTTCTGGCGGTCAACGATGACATGTACGAGGACCTGGAC
GAGAAGAGTCTGGCCAACATCCTGGCGGATCTGCGCAATGACAAGTTGCC
GCCCGCTGGTCCGCGCAACGGTAGGTTTGCCAGTGAGCCCAAGGGTGGAC
TTACCACCCTAAAGATCCAGCCACCGCCGCCCGGCTTCATGATGCAGAAA
CTACCAGATCCGAAGACCAAGAAGTGTCAGTAGAAGCTTTCTAGACC
BS14633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-PA | 717 | CG6485-RA | 1..717 | 17..733 | 3535 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-RA | 843 | CG6485-RA | 83..799 | 17..733 | 3555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17320013..17320729 | 733..17 | 3555 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:03:43 has no hits.
BS14633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:37 Download gff for
BS14633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-PA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:25 Download gff for
BS14633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 79..804 | 13..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:11 Download gff for
BS14633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 79..804 | 13..740 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:11 Download gff for
BS14633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17320008..17320733 | 13..740 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:25 Download gff for
BS14633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17313108..17313833 | 13..740 | 98 | | Minus |
BS14633.complete Sequence
749 bp assembled on 2006-11-01
GenBank Submission: FJ637732
> BS14633.complete
GAAGTTATCAGTCGACATGCTGCGCTTGCTTCAGCCCATCCGCCGCATCC
ACCTGGCACCCGTTCTCCGTTTGGGAGCACCGGTGAATGCCACTGAAATA
CGCAAAGCACTGAAGTTCGAGTTCTCCAAGGATAACCAGCGGAGGGTGAA
GGCCCTGCTCGCCTGGTATCCGCAGGCGGAGTGGAAGGGAGCACTCCTGC
CACTACTGGATATTGCCCAGCGGCAGCAGGGATGGCTTTCGATCAGTGCC
GTTCAGGCCGTGGCCGAGACCATCAAGATAGATCCAATGGAGGCCTTCGA
GGCGGCGCAGTTCTACACCATGTTCTTCATGAAGCCGCGCGGGAAATATG
TGGTCAGTGTGTGCACCTCGACGCCCTGCAAATTGCGTGGGGGCGACGAA
ATCTTTGAGGCGTGCAAGAAAACGCTCAATCTAGAGCACGGCCAGACCAC
GCCGGACATGCAGTTCACGCTCAAGGAGGATTACTGCATGGGCGCCTGTG
TGAATGCCCCCGTTCTGGCGGTCAACGATGACATGTACGAGGACCTGGAC
GAGAAGAGTCTGGCCAACATCCTGGCGGATCTGCGCAATGACAAGTTGCC
GCCCGCTGGTCCGCGCAACGGTAGGTTTGCCAGTGAGCCCAAGGGTGGAC
TTACCACCCTAAAGATCCAGCCACCGCCGCCCGGCTTCATGATGCAGAAA
CTACCAGATCCGAAGACCAAGAAGTGTCAGTAGAAGCTTTCTAGACCAT
BS14633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-RA | 717 | CG6485-PA | 1..717 | 17..733 | 3555 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-RA | 843 | CG6485-RA | 83..799 | 17..733 | 3555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17320013..17320729 | 733..17 | 3555 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:44 has no hits.
BS14633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:06 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 1..717 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:11 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 79..804 | 13..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:41 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 83..799 | 17..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:07 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 79..804 | 13..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:44 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6485-RA | 83..799 | 17..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:44 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17320013..17320729 | 17..733 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:41 Download gff for
BS14633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17313113..17313829 | 17..733 | 99 | | Minus |
BS14633.pep Sequence
Translation from 16 to 732
> BS14633.pep
MLRLLQPIRRIHLAPVLRLGAPVNATEIRKALKFEFSKDNQRRVKALLAW
YPQAEWKGALLPLLDIAQRQQGWLSISAVQAVAETIKIDPMEAFEAAQFY
TMFFMKPRGKYVVSVCTSTPCKLRGGDEIFEACKKTLNLEHGQTTPDMQF
TLKEDYCMGACVNAPVLAVNDDMYEDLDEKSLANILADLRNDKLPPAGPR
NGRFASEPKGGLTTLKIQPPPPGFMMQKLPDPKTKKCQ*
BS14633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6485-PA | 238 | CG6485-PA | 1..238 | 1..238 | 1254 | 100 | Plus |
| CG5703-PB | 242 | CG5703-PB | 44..239 | 32..227 | 600 | 55.6 | Plus |
| CG5703-PA | 242 | CG5703-PA | 44..239 | 32..227 | 600 | 55.6 | Plus |
