Clone Sequence Records
BS14635.3prime Sequence
765 bp (765 high quality bases) assembled on 2006-10-13
> BS14635.3prime
ATGGTCTAGAAAGCTTCTAATTGCGAGACAATCCGATAATGGTCAGTATG
TACATGAAGATGTTAATAATGTCCAGGTAGAGGTTTAGAGCGGCGAAGAT
GTATTCCTCAGGACTGATGGAGTACTTATGATTACCACCCAGCATCAACT
GGGTATCGTACACCAAGTAAACGGAGAAGAGCAATGCTCCCAAGGAGGCA
TAGACCAGTCCGATCACCTTGCCTGGGATGAAGATAGCGATTATGCCAAA
AATGATGAAGACCACCAGACAGGCCACCAACACTCCTCCGCACATCGTAA
AATCGTATTTGGTCTGCAGGGCAAACAGGGTGAGTCCCAGGGCCACCGCG
GCCGTAATTCCCACTGCCATCAGGACCTCATCAGCCTCAAACTGTCCGGC
GACCATACCCAGAAGGAACGACTCCGCCACGGTGAACAGGAAAAGAAAGA
TGAAGTTAAGAGGCGTCTTACGGCGTACACTTTCGCAGCAGGCCATACAG
ATCATGGTCACGATAAGAACGGCCAAGGCTATCCAAAACAGTGCCGGATT
TTTTTGCACCCATTCCTGCGAAGCTTTCGAGAACGTAAATACGCTAACAA
AACCGAAAGTGATCAGCAATTGGCACATCAATATCAAGTAGACCTTTCGA
ATAAATCCCTTCCGGATGCTCTGGTCATCGAAGGCGAAGCTCTTGTCCGC
TTCCGCATCTGTGTATGCGCCAGTTTCATCGCCTTGCTGGTAGTGATACA
TGTCGACTGATAACT
BS14635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-PB | 735 | CG3814-RB | 1..735 | 751..17 | 3600 | 99.5 | Minus |
| CG3814-PA | 720 | CG3814-RA | 28..720 | 709..17 | 3390 | 99.5 | Minus |
| CG3798-PB | 942 | Nmda1-RB | 835..917 | 124..42 | 165 | 87.9 | Minus |
| CG3798-PA | 942 | Nmda1-RA | 835..917 | 124..42 | 165 | 87.9 | Minus |
| CG3798-PF | 951 | Nmda1-RF | 844..926 | 124..42 | 165 | 87.9 | Minus |
| CG3798-PD | 975 | Nmda1-RD | 868..950 | 124..42 | 165 | 87.9 | Minus |
| CG3798-PC | 975 | Nmda1-RC | 868..950 | 124..42 | 165 | 87.9 | Minus |
| CG3798-PE | 975 | Nmda1-RE | 868..950 | 124..42 | 165 | 87.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..912 | 751..16 | 3635 | 99.6 | Minus |
| CG3814-RC | 1011 | CG3814-RC | 185..903 | 734..16 | 3550 | 99.6 | Minus |
| CG3814-RD | 933 | CG3814-RD | 132..825 | 709..16 | 3425 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875272..12875780 | 16..524 | 2500 | 99.4 | Plus |
| 2R | 25286936 | 2R | 12876101..12876209 | 626..734 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 12875841..12875944 | 523..626 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 12877671..12878016 | 33..378 | 395 | 74.3 | Plus |
| 3R | 32079331 | 3R | 14152993..14153147 | 48..202 | 295 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:13:31 has no hits.
BS14635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:38 Download gff for
BS14635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-PB | 1..735 | 17..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:02 Download gff for
BS14635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..914 | 12..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:50 Download gff for
BS14635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..914 | 12..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:50 Download gff for
BS14635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875842..12875943 | 524..625 | 100 | <- | Plus |
| 2R | 12876101..12876207 | 626..732 | 100 | <- | Plus |
| 2R | 12876772..12876790 | 733..751 | 100 | | Plus |
| 2R | 12875270..12875779 | 12..523 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:02 Download gff for
BS14635.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762775..8763284 | 12..523 | 99 | <- | Plus |
| arm_2R | 8763347..8763448 | 524..625 | 100 | <- | Plus |
| arm_2R | 8763606..8763712 | 626..732 | 100 | <- | Plus |
| arm_2R | 8764277..8764295 | 733..751 | 100 | | Plus |
BS14635.5prime Sequence
749 bp (741 high quality bases) assembled on 2006-10-13
> BS14635.5prime
GAAGTTATCAGTCGACATGTATCACTACCAGCAAGGCGATGAAACTGGCG
CATACACAGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGC
ATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTGCCAATT
GCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGC
AGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTT
CTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAA
GACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGT
TCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATG
GCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCT
GCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTC
TGGTGGTCTTCATCATTTTTGGCATAATCGCTATCTTCATCCCAGGCAAG
GTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTA
CTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAAGTACTCCA
TCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACCTGGACATT
ATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCGCAATT
BS14635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-PB | 735 | CG3814-RB | 1..733 | 17..749 | 3590 | 99.5 | Plus |
| CG3814-PA | 720 | CG3814-RA | 28..718 | 59..749 | 3380 | 99.5 | Plus |
| CG3798-PB | 942 | Nmda1-RB | 835..917 | 644..726 | 165 | 87.9 | Plus |
| CG3798-PA | 942 | Nmda1-RA | 835..917 | 644..726 | 165 | 87.9 | Plus |
| CG3798-PF | 951 | Nmda1-RF | 844..926 | 644..726 | 165 | 87.9 | Plus |
| CG3798-PD | 975 | Nmda1-RD | 868..950 | 644..726 | 165 | 87.9 | Plus |
| CG3798-PC | 975 | Nmda1-RC | 868..950 | 644..726 | 165 | 87.9 | Plus |
| CG3798-PE | 975 | Nmda1-RE | 868..950 | 644..726 | 165 | 87.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..909 | 17..749 | 3620 | 99.6 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 185..900 | 34..749 | 3535 | 99.6 | Plus |
| CG3814-RD | 933 | CG3814-RD | 132..822 | 59..749 | 3410 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875275..12875780 | 749..244 | 2485 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12876101..12876209 | 142..34 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 245..142 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 12877671..12878016 | 735..390 | 395 | 74.3 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 720..566 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:03:56 has no hits.
BS14635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:39 Download gff for
BS14635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-PB | 1..733 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:26 Download gff for
BS14635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..909 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:12 Download gff for
BS14635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..909 | 17..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:12 Download gff for
BS14635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12876772..12876790 | 17..35 | 100 | | Minus |
| 2R | 12875275..12875779 | 245..749 | 99 | <- | Minus |
| 2R | 12875842..12875943 | 143..244 | 100 | <- | Minus |
| 2R | 12876101..12876207 | 36..142 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:26 Download gff for
BS14635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8764277..8764295 | 17..35 | 100 | | Minus |
| arm_2R | 8762780..8763284 | 245..749 | 99 | <- | Minus |
| arm_2R | 8763347..8763448 | 143..244 | 100 | <- | Minus |
| arm_2R | 8763606..8763712 | 36..142 | 100 | <- | Minus |
BS14635.complete Sequence
767 bp assembled on 2006-11-01
GenBank Submission: FJ637733
> BS14635.complete
GAAGTTATCAGTCGACATGTATCACTACCAGCAAGGCGATGAAACTGGCG
CATACACAGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATGACCAGAGC
ATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATGTGCCAATT
GCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAAAGCTTCGC
AGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCTTGGCCGTT
CTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTACGCCGTAA
GACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGAGTCGT
TCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGGTCCTGATG
GCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTGTTTGCCCT
GCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGTGGCCTGTC
TGGTGGTCTTCATCATTTTTGGCATAATCGCTATCTTCATCCCAGGCAAG
GTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTCTCCGTTTA
CTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAAGTACTCCA
TCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACCTGGACATT
ATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCTCGCAATTA
GAAGCTTTCTAGACCAT
BS14635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 735 | CG3814-PB | 1..735 | 17..751 | 3630 | 99.6 | Plus |
| CG3814-RD | 720 | CG3814-PD | 28..720 | 59..751 | 3420 | 99.6 | Plus |
| CG3814-RA | 720 | CG3814-PA | 28..720 | 59..751 | 3420 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RB | 1020 | CG3814-RB | 177..912 | 17..752 | 3635 | 99.6 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 185..903 | 34..752 | 3550 | 99.6 | Plus |
| CG3814-RD | 933 | CG3814-RD | 132..825 | 59..752 | 3425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875272..12875780 | 752..244 | 2500 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12876101..12876209 | 142..34 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 245..142 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 12877671..12878016 | 735..390 | 395 | 74.3 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 720..566 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:42 has no hits.
BS14635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:07 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:13 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..914 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:21 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..911 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:08 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..914 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:53 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RB | 177..911 | 17..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:53 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875273..12875779 | 245..751 | 99 | <- | Minus |
| 2R | 12875842..12875943 | 143..244 | 100 | <- | Minus |
| 2R | 12876101..12876207 | 36..142 | 100 | <- | Minus |
| 2R | 12876772..12876790 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:21 Download gff for
BS14635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762778..8763284 | 245..751 | 99 | <- | Minus |
| arm_2R | 8763347..8763448 | 143..244 | 100 | <- | Minus |
| arm_2R | 8763606..8763712 | 36..142 | 100 | <- | Minus |
| arm_2R | 8764277..8764295 | 17..35 | 100 | | Minus |
BS14635.pep Sequence
Translation from 16 to 750
> BS14635.pep
MYHYQQGDETGAYTDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFG
FVSVFTFSKASQEWVQKNPALFWIALAVLIVTMICMACCESVRRKTPLNF
IFLFLFTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLFALQTKYD
FTMCGGVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDT
QLMLGGNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN*
BS14635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-PB | 244 | CG3814-PB | 1..244 | 1..244 | 1238 | 100 | Plus |
| CG3814-PD | 239 | CG3814-PD | 10..239 | 15..244 | 1157 | 100 | Plus |
| CG3814-PA | 239 | CG3814-PA | 10..239 | 15..244 | 1157 | 100 | Plus |
| CG3814-PC | 203 | CG3814-PC | 1..203 | 42..244 | 1023 | 100 | Plus |
| Nmda1-PH | 313 | CG3798-PH | 79..313 | 11..244 | 877 | 71.5 | Plus |
