Clone Sequence Records
BS14636.3prime Sequence
785 bp (706 high quality bases) assembled on 2006-10-13
> BS14636.3prime
ATGGTCTAGAAAGCTTCTAGATGCGACTGACATACTTTAAATTTGCTATG
TTTTGGTGGGAACACTTCAGCTTCAAGATGGGGCAGGTTGGAATCGGGTA
GATACACTTGCAGTAGACAAATTGATTGTTAAGATACTCCTCAAACTCCT
CCATGGCGGATTCGTTTTGGAGCAGATCGCGGTATTCCTCGACACTCTCC
AGATTCACGGGATCCAGCTGATGCATGAAGCACTTGAGCTTCAGCACTGT
TGCATACAAATAGTTGAATATGTCGACGGCCATGATCTTGTGGTACTTGA
TGCTTCTATGATGGCTATCGCCCATGATGAAAGGCGTTTCCTGTGCCTTG
TCCAGCCGTTCGTAGGCGGCATAGAACTCCTTGCACTGCTGATTGATTTC
CAACAGGGTGTTTTTCATTTTGTTGTTTGAAGCTCGCAGCACTTCCAATT
TTTCCTCATATTCATTGATAATGGCCTCCTCGGTGGACAAGGTGTACACT
TCGGGATAGCGACAGCTCTGCTCTGAACTGATTAGAATCAGATATCGCTG
GGTTAGCAGCCATATCCGTTCAACCAGTATCTTTTGGGCCTTCATTTCGC
ACTTGTATAGATTGTAGTATTCCTTATAACGCATCTCTAACTTGACAAGG
AGACCCAGAACTTCTGCCTCAATCCCGTAGTGCTTCTTGAGCTGCTTGGT
TAGATGCGGCTCCTCATCCTCCACCTTGTTTGATCTGTTATCCGATCTGC
GCTCCAACTTGCCCGCCACTATGGGTTCCAACATC
BS14636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-PA | 789 | CG31910-RA | 21..789 | 785..17 | 3770 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 905 | CG31910-RA | 101..869 | 785..17 | 3800 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6744699..6745107 | 17..425 | 2000 | 99.3 | Plus |
2L | 23513712 | 2L | 6745163..6745522 | 426..785 | 1800 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 2005..2063 | 461..404 | 112 | 67.8 | Minus |
BS14636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:39 Download gff for
BS14636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-PA | 21..789 | 17..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:49 Download gff for
BS14636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 101..875 | 13..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:08 Download gff for
BS14636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 101..875 | 13..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:08 Download gff for
BS14636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6744693..6745107 | 13..425 | 98 | <- | Plus |
2L | 6745163..6745522 | 426..785 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:49 Download gff for
BS14636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6744693..6745107 | 13..425 | 98 | <- | Plus |
arm_2L | 6745163..6745522 | 426..785 | 100 | | Plus |
BS14636.5prime Sequence
738 bp (625 high quality bases) assembled on 2006-10-13
> BS14636.5prime
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTTAACATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCCACCTG
BS14636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-PA | 789 | CG31910-RA | 1..675 | 17..691 | 3300 | 99.5 | Plus |
CG31910-PA | 789 | CG31910-RA | 680..722 | 696..738 | 190 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 905 | CG31910-RA | 81..802 | 17..738 | 3505 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6745163..6745542 | 396..17 | 1900 | 100 | Minus |
2L | 23513712 | 2L | 6744766..6745107 | 738..397 | 1605 | 98 | Minus |
Blast to na_te.dros performed 2015-02-10 16:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 2005..2063 | 361..418 | 112 | 67.8 | Plus |
BS14636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:40 Download gff for
BS14636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-PA | 1..722 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:50 Download gff for
BS14636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..802 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:58 Download gff for
BS14636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..802 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:58 Download gff for
BS14636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6744766..6745107 | 397..738 | 98 | <- | Minus |
2L | 6745163..6745542 | 17..396 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:50 Download gff for
BS14636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6744766..6745107 | 397..738 | 98 | <- | Minus |
arm_2L | 6745163..6745542 | 17..396 | 100 | | Minus |
BS14636.complete Sequence
821 bp assembled on 2006-11-01
GenBank Submission: FJ637734
> BS14636.complete
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCAACCTGCCCCATCTTGAA
GCTGAAGTGTTCCCACCAAAACATAGCAAATTTAAAGTATGTCAGTCGCA
TCTAGAAGCTTTCTAGACCAT
BS14636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 789 | CG31910-PA | 1..789 | 17..805 | 3900 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-RA | 905 | CG31910-RA | 81..869 | 17..805 | 3900 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6744699..6745107 | 805..397 | 2000 | 99.3 | Minus |
2L | 23513712 | 2L | 6745163..6745542 | 396..17 | 1900 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 2005..2063 | 361..418 | 112 | 67.8 | Plus |
BS14636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:52 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:23 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 68..862 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:49 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..869 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:52 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 68..862 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:28 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31910-RA | 81..869 | 17..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:28 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6744699..6745107 | 397..805 | 99 | <- | Minus |
2L | 6745163..6745542 | 17..396 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:49 Download gff for
BS14636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6744699..6745107 | 397..805 | 99 | <- | Minus |
arm_2L | 6745163..6745542 | 17..396 | 100 | | Minus |
BS14636.pep Sequence
Translation from 16 to 804
> BS14636.pep
MEHRVELMLEPIVAGKLERRSDNRSNKVEDEEPHLTKQLKKHYGIEAEVL
GLLVKLEMRYKEYYNLYKCEMKAQKILVERIWLLTQRYLILISSEQSCRY
PEVYTLSTEEAIINEYEEKLEVLRASNNKMKNTLLEINQQCKEFYAAYER
LDKAQETPFIMGDSHHRSIKYHKIMAVDIFNYLYATVLKLKCFMHQLDPV
NLESVEEYRDLLQNESAMEEFEEYLNNQFVYCKCIYPIPTCPILKLKCSH
QNIANLKYVSRI*
BS14636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31910-PA | 262 | CG31910-PA | 1..262 | 1..262 | 1369 | 100 | Plus |
CG30391-PA | 338 | CG30391-PA | 34..234 | 39..242 | 325 | 30.9 | Plus |
CG30393-PA | 354 | CG30393-PA | 39..234 | 44..242 | 300 | 31.7 | Plus |