Clone BS14636 Report

Search the DGRC for BS14636

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG31910-RA
Protein status:BS14636.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14636.3prime Sequence

785 bp (706 high quality bases) assembled on 2006-10-13

> BS14636.3prime
ATGGTCTAGAAAGCTTCTAGATGCGACTGACATACTTTAAATTTGCTATG
TTTTGGTGGGAACACTTCAGCTTCAAGATGGGGCAGGTTGGAATCGGGTA
GATACACTTGCAGTAGACAAATTGATTGTTAAGATACTCCTCAAACTCCT
CCATGGCGGATTCGTTTTGGAGCAGATCGCGGTATTCCTCGACACTCTCC
AGATTCACGGGATCCAGCTGATGCATGAAGCACTTGAGCTTCAGCACTGT
TGCATACAAATAGTTGAATATGTCGACGGCCATGATCTTGTGGTACTTGA
TGCTTCTATGATGGCTATCGCCCATGATGAAAGGCGTTTCCTGTGCCTTG
TCCAGCCGTTCGTAGGCGGCATAGAACTCCTTGCACTGCTGATTGATTTC
CAACAGGGTGTTTTTCATTTTGTTGTTTGAAGCTCGCAGCACTTCCAATT
TTTCCTCATATTCATTGATAATGGCCTCCTCGGTGGACAAGGTGTACACT
TCGGGATAGCGACAGCTCTGCTCTGAACTGATTAGAATCAGATATCGCTG
GGTTAGCAGCCATATCCGTTCAACCAGTATCTTTTGGGCCTTCATTTCGC
ACTTGTATAGATTGTAGTATTCCTTATAACGCATCTCTAACTTGACAAGG
AGACCCAGAACTTCTGCCTCAATCCCGTAGTGCTTCTTGAGCTGCTTGGT
TAGATGCGGCTCCTCATCCTCCACCTTGTTTGATCTGTTATCCGATCTGC
GCTCCAACTTGCCCGCCACTATGGGTTCCAACATC

BS14636.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-PA 789 CG31910-RA 21..789 785..17 3770 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 905 CG31910-RA 101..869 785..17 3800 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6744699..6745107 17..425 2000 99.3 Plus
2L 23513712 2L 6745163..6745522 426..785 1800 100 Plus
Blast to na_te.dros performed 2015-02-10 21:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 2005..2063 461..404 112 67.8 Minus

BS14636.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:39 Download gff for BS14636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-PA 21..789 17..785 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:49 Download gff for BS14636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 101..875 13..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:08 Download gff for BS14636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 101..875 13..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:08 Download gff for BS14636.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6744693..6745107 13..425 98 <- Plus
2L 6745163..6745522 426..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:49 Download gff for BS14636.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6744693..6745107 13..425 98 <- Plus
arm_2L 6745163..6745522 426..785 100   Plus

BS14636.5prime Sequence

738 bp (625 high quality bases) assembled on 2006-10-13

> BS14636.5prime
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTTAACATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCCACCTG

BS14636.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-PA 789 CG31910-RA 1..675 17..691 3300 99.5 Plus
CG31910-PA 789 CG31910-RA 680..722 696..738 190 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 905 CG31910-RA 81..802 17..738 3505 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6745163..6745542 396..17 1900 100 Minus
2L 23513712 2L 6744766..6745107 738..397 1605 98 Minus
Blast to na_te.dros performed 2015-02-10 16:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 2005..2063 361..418 112 67.8 Plus

BS14636.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:40 Download gff for BS14636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-PA 1..722 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:50 Download gff for BS14636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..802 17..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:58 Download gff for BS14636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..802 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:58 Download gff for BS14636.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6744766..6745107 397..738 98 <- Minus
2L 6745163..6745542 17..396 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:50 Download gff for BS14636.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6744766..6745107 397..738 98 <- Minus
arm_2L 6745163..6745542 17..396 100   Minus

BS14636.complete Sequence

821 bp assembled on 2006-11-01

GenBank Submission: FJ637734

> BS14636.complete
GAAGTTATCAGTCGACATGGAACACAGAGTTGAATTGATGTTGGAACCCA
TAGTGGCGGGCAAGTTGGAGCGCAGATCGGATAACAGATCAAACAAGGTG
GAGGATGAGGAGCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGAT
TGAGGCAGAAGTTCTGGGTCTCCTTGTCAAGTTAGAGATGCGTTATAAGG
AATACTACAATCTATACAAGTGCGAAATGAAGGCCCAAAAGATACTGGTT
GAACGGATATGGCTGCTAACCCAGCGATATCTGATTCTAATCAGTTCAGA
GCAGAGCTGTCGCTATCCCGAAGTGTACACCTTGTCCACCGAGGAGGCCA
TTATCAATGAATATGAGGAAAAATTGGAAGTGCTGCGAGCTTCAAACAAC
AAAATGAAAAACACCCTGTTGGAAATCAATCAGCAGTGCAAGGAGTTCTA
TGCCGCCTACGAACGGCTGGACAAGGCACAGGAAACGCCTTTCATCATGG
GCGATAGCCATCATAGAAGCATCAAGTACCACAAGATCATGGCCGTCGAC
ATATTCAACTATTTGTATGCAACAGTGCTGAAGCTCAAGTGCTTCATGCA
TCAGCTGGATCCCGTGAATCTGGAGAGTGTCGAGGAATACCGCGATCTGC
TCCAAAACGAATCCGCCATGGAGGAGTTTGAGGAGTATCTTAACAATCAA
TTTGTCTACTGCAAGTGTATCTACCCGATTCCAACCTGCCCCATCTTGAA
GCTGAAGTGTTCCCACCAAAACATAGCAAATTTAAAGTATGTCAGTCGCA
TCTAGAAGCTTTCTAGACCAT

BS14636.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 789 CG31910-PA 1..789 17..805 3900 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-RA 905 CG31910-RA 81..869 17..805 3900 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6744699..6745107 805..397 2000 99.3 Minus
2L 23513712 2L 6745163..6745542 396..17 1900 100 Minus
Blast to na_te.dros performed 2014-11-27 13:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 2005..2063 361..418 112 67.8 Plus

BS14636.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:52 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 1..789 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:23 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 68..862 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:49 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..869 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:52 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 68..862 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:28 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
CG31910-RA 81..869 17..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:28 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6744699..6745107 397..805 99 <- Minus
2L 6745163..6745542 17..396 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:49 Download gff for BS14636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6744699..6745107 397..805 99 <- Minus
arm_2L 6745163..6745542 17..396 100   Minus

BS14636.pep Sequence

Translation from 16 to 804

> BS14636.pep
MEHRVELMLEPIVAGKLERRSDNRSNKVEDEEPHLTKQLKKHYGIEAEVL
GLLVKLEMRYKEYYNLYKCEMKAQKILVERIWLLTQRYLILISSEQSCRY
PEVYTLSTEEAIINEYEEKLEVLRASNNKMKNTLLEINQQCKEFYAAYER
LDKAQETPFIMGDSHHRSIKYHKIMAVDIFNYLYATVLKLKCFMHQLDPV
NLESVEEYRDLLQNESAMEEFEEYLNNQFVYCKCIYPIPTCPILKLKCSH
QNIANLKYVSRI*

BS14636.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31910-PA 262 CG31910-PA 1..262 1..262 1369 100 Plus
CG30391-PA 338 CG30391-PA 34..234 39..242 325 30.9 Plus
CG30393-PA 354 CG30393-PA 39..234 44..242 300 31.7 Plus