Clone Sequence Records
BS14637.complete Sequence
1559 bp assembled on 2009-12-07
GenBank Submission: KX803020
> BS14637.complete
GAAGTTATCAGTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTC
CCAAATTGGCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAA
CGTACAAATCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATG
TGGCCAAATGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAG
CTATTTCGGAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTG
AAGGCACAGCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATC
CGCCTATCCGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCT
TAGAGCACAAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAG
GACATGACTGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGT
GTGGTTCTTTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTG
GTAACGAGGGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTC
ACTTTGACCTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCT
CTACGTGTCCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATG
GGGGTGAGGTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTG
ATTGGACTAATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCA
GGATATCATGATTACTAAAACCCAAAATACTGAGGCCAATGGCTACGGTT
TCGATTTGGAACAGATATCCAGCGAGACGGTCACACCTGCATCAGATTTG
CGCAGAATCTGGCGCGAGTTCTACGAGGAGCCCAGGGACTTCATTTACGC
CGACACTCCGTATGATACTACGCGTTTCGAAGAGGTTTCTCAGGGCATCT
TCGATCACCAGGTAATGCGCAAGCGATATGCCATCAGTTTCGACACCCTG
CTCTTGGAGGCACAGGACAGAGCATTTAAGGCTGGTAAGCCCGCCTATAT
CCATGTGGTCGGCATCGGACTGGGCGTTTGGAAGGCAGCTAGACAGCAGG
AGCGCACCTTCCTTGAATCTTTTGAGGGACGATTGCGGGCACTTGGAGAA
CGACTAAGCCACATCGGAGTGGTACACTTCTCATGGTTTCATTTGGCATG
TGTGGGCAGCTTGCATGACGGAGCCATCATTCCCGTGGACAAACATCCCC
AGGGTGGCATTCGCATTCGCAATTCGGTCCGAAATCCCGGAGACAAACTA
ACGGAGGACATGTTGCCCGTGGTGACATACGCCTGGGATGGAAATGCCCT
GCCTGGCAACGAATTTTGGGCGAATATGCTAATCAGCACTGGGGATCCAG
CAGCAGCCTGTTCCACTTTAATCTCTGAACTCCAAAATCCCCACATTAAT
GTGCACTATATGAACGGAGCCAATCTGCACATTGCATCAGTGGAACACGG
ACTACTCCATGTAGGCGACTACGCTAGGCGACTGATTGTGTAAAAGCTTT
CTAGACCAT
BS14637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1527 | CG3568-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
CG2909-RA | 1518 | CG2909-PA | 994..1056 | 1049..1111 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1693 | CG3568-RA | 74..1601 | 17..1544 | 7640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4543175..4544176 | 371..1372 | 5010 | 100 | Plus |
X | 23542271 | X | 4542703..4542912 | 17..226 | 1050 | 100 | Plus |
X | 23542271 | X | 4544233..4544405 | 1372..1544 | 865 | 100 | Plus |
X | 23542271 | X | 4542976..4543123 | 225..372 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:44 has no hits.
BS14637.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:32 Download gff for
BS14637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 67..1591 | 17..1541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:00 Download gff for
BS14637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 74..1598 | 17..1541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:52 Download gff for
BS14637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 67..1591 | 17..1541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:36 Download gff for
BS14637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 74..1598 | 17..1541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:36 Download gff for
BS14637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4542703..4542912 | 17..226 | 100 | -> | Plus |
X | 4542978..4543122 | 227..371 | 100 | -> | Plus |
X | 4543176..4544176 | 372..1372 | 100 | -> | Plus |
X | 4544234..4544402 | 1373..1541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:00 Download gff for
BS14637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4438267..4438435 | 1373..1541 | 100 | | Plus |
arm_X | 4436736..4436945 | 17..226 | 100 | -> | Plus |
arm_X | 4437011..4437155 | 227..371 | 100 | -> | Plus |
arm_X | 4437209..4438209 | 372..1372 | 100 | -> | Plus |
BS14637.3prime Sequence
736 bp (697 high quality bases) assembled on 2006-10-13
> BS14637.3prime
ATGGTCTAGAAAGCTTTTACACAATCAGTCGCCTAGCGTAGTCGCCTACA
TGGAGTAGTCCGTGTTCCACTGATGCAATGTGCAGATTGGCTCCGTTCAT
ATAGTGCACATTAATGTGGGGATTTTGGAGTTCAGAGATTAAAGTGGAAC
AGGCTGCTGCTGGATCCCCAGTGCTGATTAGCATATTCGCCCAAAATTCG
TTGCCAGGCAGGGCATTTCCATCCCAGGCGTATGTCACCACGGGCAACAT
GTCCTCCGTTAGTTTGTCTCCGGGATTTCGGACCGAATTGCGAATGCGAA
TGCCACCCTGGGGATGTTTGTCCACGGGAATGATGGCTCCGTCATGCAAG
CTGCCCACACATGCCAAATGAAACCATGAGAAGTGTACCACTCCGATGTG
GCTTAGTCGTTCTCCAAGTGCCCGCAATCGTCCCTCAAAAGATTCAAGGA
AGGTGCGCTCCTGCTGTCTAGCTGCCTTCCAAACGCCCAGTCCGATGCCG
ACCACATGGATATAGGCGGGCTTACCAGCCTTAAATGCTCTGTCCTGTGC
CTCCAAGAGCAGGGTGTCGAAACTGATGGCATATCGCTTGCGCATTACCT
GGTGATCGAAGATGCCCCTGAGAAACCTCTTCGAAACGCGTAGTATCATA
CGGAGTGTCGGCGTAAATGAAGTCCCTGGGCTCCTCGTAGAACTCGCGCC
AGATTCTGCGCAAATCTGATGCAGGTGTGACCGTCT
BS14637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-PA | 1527 | CG3568-RA | 809..1527 | 736..17 | 3560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1693 | CG3568-RA | 882..1601 | 736..16 | 3580 | 99.9 | Minus |
CG2909-RA | 2018 | CG2909-RA | 1072..1210 | 587..449 | 195 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4543629..4544176 | 736..188 | 2695 | 99.8 | Minus |
X | 23542271 | X | 4544233..4544405 | 188..16 | 865 | 100 | Minus |
X | 23542271 | X | 10327737..10327799 | 511..449 | 180 | 85.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:20:32 has no hits.
BS14637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:40 Download gff for
BS14637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-PA | 809..1527 | 17..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:57:33 Download gff for
BS14637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 882..1601 | 16..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:38:29 Download gff for
BS14637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 882..1601 | 16..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:38:29 Download gff for
BS14637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4543629..4544176 | 188..736 | 99 | -> | Minus |
X | 4544234..4544405 | 16..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:57:33 Download gff for
BS14637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4437662..4438209 | 188..736 | 99 | -> | Minus |
arm_X | 4438267..4438438 | 16..187 | 100 | | Minus |
BS14637.5prime Sequence
771 bp (718 high quality bases) assembled on 2006-10-13
> BS14637.5prime
GAAGTTATCAGTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTC
CCAAATTGGCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAA
CGTACAAATCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATG
TGGCCAAATGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAG
CTATTTCGGAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTG
AAGGCACAGCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATC
CGCCTATCCGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCT
TAGAGCACAAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAG
GACATGACTGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGT
GTGGTTCTTTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTG
GTAACGAGGGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTC
ACTTTGACCTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCT
CTACGTGTCCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATG
GGGGTGAGGTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTG
ATTGGACTAATTGGAGCTCGTTTCGAGCGTCCCCGATGTGATGGAGTACC
AGGAATATCATGATTACTAAA
BS14637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-PA | 1527 | CG3568-RA | 1..753 | 17..771 | 3695 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-RA | 1693 | CG3568-RA | 74..826 | 17..771 | 3725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4543175..4543573 | 371..771 | 1905 | 99.5 | Plus |
X | 23542271 | X | 4542703..4542912 | 17..226 | 1050 | 100 | Plus |
X | 23542271 | X | 4542976..4543123 | 225..372 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:30:37 has no hits.
BS14637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:40 Download gff for
BS14637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-PA | 1..750 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:11:54 Download gff for
BS14637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 68..823 | 10..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:28 Download gff for
BS14637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3568-RA | 68..823 | 10..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:28 Download gff for
BS14637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4542697..4542912 | 10..226 | 98 | -> | Plus |
X | 4542978..4543122 | 227..371 | 100 | -> | Plus |
X | 4543176..4543570 | 372..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:11:54 Download gff for
BS14637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4436730..4436945 | 10..226 | 98 | -> | Plus |
arm_X | 4437011..4437155 | 227..371 | 100 | -> | Plus |
arm_X | 4437209..4437603 | 372..768 | 99 | | Plus |
BS14637.pep Sequence
Translation from 16 to 1542
> BS14637.pep
MRSFLYMLSQRPKLACLCGKSIIIWPGKRTNLPENAFTQRMLQECGQMAK
PDASVDLDNFKAISEQSPAEFGIDSCRVKAQPEDRSDRIREQIASAYPVI
HERTLLLFISFLEHKLTFGSEQEKAIYKDMTVVDLVQRLLAKRCVWFFGA
NDYYRTMQGNIGNEGFEAVGTPAEKEPLTLTSVLSYDEIKLSALLYVSCH
SEFINNGSRVNGGEVLQNKDTIEREGVVIGLIGARFERPDVMEYQDIMIT
KTQNTEANGYGFDLEQISSETVTPASDLRRIWREFYEEPRDFIYADTPYD
TTRFEEVSQGIFDHQVMRKRYAISFDTLLLEAQDRAFKAGKPAYIHVVGI
GLGVWKAARQQERTFLESFEGRLRALGERLSHIGVVHFSWFHLACVGSLH
DGAIIPVDKHPQGGIRIRNSVRNPGDKLTEDMLPVVTYAWDGNALPGNEF
WANMLISTGDPAAACSTLISELQNPHINVHYMNGANLHIASVEHGLLHVG
DYARRLIV*
BS14637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3568-PA | 508 | CG3568-PA | 1..508 | 1..508 | 2664 | 100 | Plus |
CG2909-PA | 505 | CG2909-PA | 11..498 | 24..507 | 1277 | 51.8 | Plus |