Clone Sequence Records
BS14638.3prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS14638.3prime
ATGGTCTAGAAAGCTTCTAGCGGCCGTACTTCTGGTAGACCCACTCCTTG
TTGTCCAGCGGACAGACCAGGCGCGTTTTCAACCAGCGCGCGATGCAGTG
GTAATGGAATGCGTGGTTGCACTCGCCCCAAGCCACAGTGCACTCGTCTT
GGTTTGCATTCGGGTCCGCCTGGCACTCGATGCACAGGTTCATGATGTGG
TTACGGCAGATGGCACAGTTGTCCACTGCTACGTCCCATCCCCACATGGC
GTGCGCAACCCATTTCTTCACCACAAAGCGCTCCGTCCTGGCCTGGACAG
CTCCTCCACTACAGGATGGCTCTTCGTCATTGAAGTCCATGTCGTGGAAG
TCCTCCGTCTCCTCAACCTCTATCTCCTCGGCCATGTCGACTGATAACT
BS14638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16988-PA | 369 | Roc1b-RA | 1..369 | 385..17 | 1845 | 100 | Minus |
| CG16982-PA | 327 | Roc1a-RA | 115..174 | 226..167 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 2671..3040 | 17..386 | 1850 | 100 | Plus |
| Cdc5-RA | 3346 | CG6905-RA | 2798..3167 | 17..386 | 1850 | 100 | Plus |
| Roc1b-RA | 506 | CG16988-RA | 50..419 | 386..17 | 1850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 358030..358399 | 386..17 | 1850 | 100 | Minus |
| X | 23542271 | X | 647711..647922 | 226..18 | 410 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:49:33 has no hits.
BS14638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:41 Download gff for
BS14638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16988-PA | 1..369 | 17..385 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:08 Download gff for
BS14638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..419 | 17..394 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:52 Download gff for
BS14638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..419 | 17..394 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:52 Download gff for
BS14638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358024..358399 | 17..394 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:08 Download gff for
BS14638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358024..358399 | 17..394 | 98 | | Minus |
BS14638.5prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS14638.5prime
GAAGTTATCAGTCGACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGG
ACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGA
GCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCA
CGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTA
ACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAAC
CAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTA
CCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACA
ACAAGGAGTGGGTCTACCAGAAGTACGGCCGCTAGAAGCTTTCTAGACC
BS14638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16988-PA | 369 | Roc1b-RA | 1..369 | 17..385 | 1845 | 100 | Plus |
| CG16982-PA | 327 | Roc1a-RA | 115..174 | 176..235 | 175 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 2671..3040 | 385..16 | 1850 | 100 | Minus |
| Cdc5-RA | 3346 | CG6905-RA | 2798..3167 | 385..16 | 1850 | 100 | Minus |
| Roc1b-RA | 506 | CG16988-RA | 50..419 | 16..385 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 358030..358399 | 16..385 | 1850 | 100 | Plus |
| X | 23542271 | X | 647711..647922 | 176..384 | 410 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:52:26 has no hits.
BS14638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:41 Download gff for
BS14638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16988-PA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:17 Download gff for
BS14638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..419 | 8..385 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:31 Download gff for
BS14638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 44..419 | 8..385 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:31 Download gff for
BS14638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358024..358399 | 8..385 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:17 Download gff for
BS14638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358024..358399 | 8..385 | 98 | | Plus |
BS14638.complete Sequence
401 bp assembled on 2006-11-01
GenBank Submission: FJ637735
> BS14638.complete
GAAGTTATCAGTCGACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGG
ACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGA
GCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCA
CGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTA
ACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAAC
CAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTA
CCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACA
ACAAGGAGTGGGTCTACCAGAAGTACGGCCGCTAGAAGCTTTCTAGACCA
T
BS14638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc1b-RA | 369 | CG16988-PA | 1..369 | 17..385 | 1845 | 100 | Plus |
| Roc1a-RD | 327 | CG16982-PD | 59..326 | 120..384 | 435 | 78.4 | Plus |
| Roc1a-RA | 327 | CG16982-PA | 59..326 | 120..384 | 435 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 2671..3040 | 385..16 | 1850 | 100 | Minus |
| Cdc5-RA | 3346 | CG6905-RA | 2798..3167 | 385..16 | 1850 | 100 | Minus |
| Roc1b-RA | 506 | CG16988-RA | 50..419 | 16..385 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 358030..358399 | 16..385 | 1850 | 100 | Plus |
| X | 23542271 | X | 647711..647922 | 176..384 | 410 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:23:23 has no hits.
BS14638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:56 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:22 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 2798..3173 | 8..385 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:12 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 51..419 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:57 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 2798..3173 | 8..385 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:29 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1b-RA | 51..419 | 17..385 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:29 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358031..358399 | 17..385 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:12 Download gff for
BS14638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358031..358399 | 17..385 | 100 | | Plus |
BS14638.pep Sequence
Translation from 16 to 384
> BS14638.pep
MAEEIEVEETEDFHDMDFNDEEPSCSGGAVQARTERFVVKKWVAHAMWGW
DVAVDNCAICRNHIMNLCIECQADPNANQDECTVAWGECNHAFHYHCIAR
WLKTRLVCPLDNKEWVYQKYGR*
BS14638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc1b-PA | 122 | CG16988-PA | 1..122 | 1..122 | 705 | 100 | Plus |
| Roc1a-PD | 108 | CG16982-PD | 9..107 | 21..121 | 395 | 67.6 | Plus |
| Roc1a-PA | 108 | CG16982-PA | 9..107 | 21..121 | 395 | 67.6 | Plus |
| Roc1a-PC | 136 | CG16982-PC | 53..135 | 40..121 | 376 | 73.5 | Plus |
| Roc2-PB | 113 | CG8998-PB | 4..113 | 15..122 | 263 | 42.3 | Plus |
