Clone BS14639 Report

Search the DGRC for BS14639

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG2127-RA
Protein status:BS14639.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14639.3prime Sequence

748 bp (728 high quality bases) assembled on 2006-10-13

> BS14639.3prime
ATGGTCTAGAAAGCTTCTACGTTTCGCCACACTTAAGGACTGCCCCCTTG
CCACGGGCGATCCTTCGCCTCAGCTCCGCCCACATCTCGCAGGCCATGGG
AACTCGAAGGCATAGGCACTCTGTAGGTGGTGCGTTAGTGAGCTCCTCCC
GCTTGCATTCTGAGAAGCTGGGATACGGCGCCGGGCGCTTGGTACAGTCG
GTAGGTCGGCGTTCTCGGTGGCAACTGGGCGGAATACGGGCGGGCTTGCA
GCAGGGAAGAGTCCAGCGCGGACAGGGTGAGGAGTCCTCTGCCTTCTTGC
ACTCCATGGGATTAAGCATGGGCATCGTGGGACGGGCTGTGGCCACCACC
GTCTTCCGCTGACGGCGGCAGGGCTTCGGACGCGGTCGCTTTGCGTGGAT
GCACACCTTCTTGGGCTTGATCACCAACCGGGGGCACTCGTTCCACGTCA
CCTGGTACTGGCGGGCCTCTTTGTCCGATATGCGGTAGTGCTGGATGTCG
TACCGCACTGGCACATCGCACTTTGGCACGTACTCGCAGTCGGGTATATA
CCACATGGACCTCATCTTTGCTGGCAGCTTTGGCTTGTTGGACTTTTCCT
TCTTGGGCTCTTCCTTCTTCTTGCGCTTACCGCCCTTGACTGCATCGCAA
ATGGTGCCCTTGAACCGAGCAGGACCACAGCCCTTGGAGGTCGATACCTG
ATCGCAATCCTTTGGCCGCCCGCAATCATCGGCGGAAGACTGACTGCT

BS14639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-PA 918 CG2127-RA 187..918 748..17 3635 99.8 Minus
CG2127-PB 870 CG2127-RB 139..870 748..17 3635 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RB 1640 CG2127-RB 250..981 748..17 3645 99.9 Minus
CG2127-RA 1695 CG2127-RA 305..1036 748..17 3645 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8369003..8369734 17..748 3645 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:34:17 has no hits.

BS14639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:41 Download gff for BS14639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-PB 139..870 17..748 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:52 Download gff for BS14639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 305..1038 13..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:11 Download gff for BS14639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 305..1038 13..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:11 Download gff for BS14639.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8369001..8369734 13..748 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:52 Download gff for BS14639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4256506..4257239 13..748 99   Plus

BS14639.5prime Sequence

778 bp (715 high quality bases) assembled on 2006-10-13

> BS14639.5prime
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTAT

BS14639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-PA 918 CG2127-RA 1..762 17..778 3785 99.8 Plus
CG2127-PB 870 CG2127-RB 1..714 65..778 3545 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RA 1695 CG2127-RA 119..880 17..778 3795 99.9 Plus
CG2127-RB 1640 CG2127-RB 103..825 56..778 3600 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8369159..8369920 778..17 3795 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:34:37 has no hits.

BS14639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:42 Download gff for BS14639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-PA 1..762 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:53 Download gff for BS14639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..880 12..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:14 Download gff for BS14639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..880 12..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:14 Download gff for BS14639.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8369159..8369925 12..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:53 Download gff for BS14639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4256664..4257430 12..778 99   Minus

BS14639.complete Sequence

950 bp assembled on 2006-11-01

GenBank Submission: FJ637736

> BS14639.complete
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTATCCCAGCTTCTCAGAATGCAAGC
GGGAGGAGCTCACTAACGCACCACCTACAGAGTGCCTATGCCTTCGAGTT
CCCATGGCCTGCGAGATGTGGGCGGAGCTGAGGCGAAGGATCGCCCGTGG
CAAGGGGGCAGTCCTTAAGTGTGGCGAAACGTAGAAGCTTTCTAGACCAT

BS14639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RA 918 CG2127-PA 1..918 17..934 4575 99.9 Plus
CG2127-RB 870 CG2127-PB 1..870 65..934 4335 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-RA 1695 CG2127-RA 119..1036 17..934 4575 99.9 Plus
CG2127-RB 1640 CG2127-RB 103..981 56..934 4380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8369003..8369920 934..17 4575 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 10:47:17 has no hits.

BS14639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:53 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 1..918 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:54 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..1038 12..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:21 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 124..1036 22..934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:54 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 114..1038 12..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:51 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
CG2127-RA 124..1036 22..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:51 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8369003..8369915 22..934 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:21 Download gff for BS14639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4256508..4257420 22..934 99   Minus

BS14639.pep Sequence

Translation from 16 to 933

> BS14639.pep
MLRMLRQKCRSLVDRSMPCLESLVNACSLFKVDWSKNLSQIKTPADCVGS
SVLRQHLLRRNYSSQSSADDCGRPKDCDQVSTSKGCGPARFKGTICDAVK
GGKRKKKEEPKKEKSNKPKLPAKMRSMWYIPDCEYVPKCDVPVRYDIQHY
RISDKEARQYQVTWNECPRLVIKPKKVCIHAKRPRPKPCRRQRKTVVATA
RPTMPMLNPMECKKAEDSSPCPRWTLPCCKPARIPPSCHRERRPTDCTKR
PAPYPSFSECKREELTNAPPTECLCLRVPMACEMWAELRRRIARGKGAVL
KCGET*

BS14639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2127-PA 305 CG2127-PA 1..305 1..305 1688 100 Plus
CG2127-PB 289 CG2127-PB 1..289 17..305 1609 100 Plus
CG33340-PA 229 CG33340-PA 23..224 80..291 338 38 Plus
CG8701-PA 246 CG8701-PA 36..231 74..290 338 42.5 Plus
CG12860-PA 316 CG12860-PA 66..304 59..292 274 31 Plus