Clone Sequence Records
BS14639.3prime Sequence
748 bp (728 high quality bases) assembled on 2006-10-13
> BS14639.3prime
ATGGTCTAGAAAGCTTCTACGTTTCGCCACACTTAAGGACTGCCCCCTTG
CCACGGGCGATCCTTCGCCTCAGCTCCGCCCACATCTCGCAGGCCATGGG
AACTCGAAGGCATAGGCACTCTGTAGGTGGTGCGTTAGTGAGCTCCTCCC
GCTTGCATTCTGAGAAGCTGGGATACGGCGCCGGGCGCTTGGTACAGTCG
GTAGGTCGGCGTTCTCGGTGGCAACTGGGCGGAATACGGGCGGGCTTGCA
GCAGGGAAGAGTCCAGCGCGGACAGGGTGAGGAGTCCTCTGCCTTCTTGC
ACTCCATGGGATTAAGCATGGGCATCGTGGGACGGGCTGTGGCCACCACC
GTCTTCCGCTGACGGCGGCAGGGCTTCGGACGCGGTCGCTTTGCGTGGAT
GCACACCTTCTTGGGCTTGATCACCAACCGGGGGCACTCGTTCCACGTCA
CCTGGTACTGGCGGGCCTCTTTGTCCGATATGCGGTAGTGCTGGATGTCG
TACCGCACTGGCACATCGCACTTTGGCACGTACTCGCAGTCGGGTATATA
CCACATGGACCTCATCTTTGCTGGCAGCTTTGGCTTGTTGGACTTTTCCT
TCTTGGGCTCTTCCTTCTTCTTGCGCTTACCGCCCTTGACTGCATCGCAA
ATGGTGCCCTTGAACCGAGCAGGACCACAGCCCTTGGAGGTCGATACCTG
ATCGCAATCCTTTGGCCGCCCGCAATCATCGGCGGAAGACTGACTGCT
BS14639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-PA | 918 | CG2127-RA | 187..918 | 748..17 | 3635 | 99.8 | Minus |
CG2127-PB | 870 | CG2127-RB | 139..870 | 748..17 | 3635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RB | 1640 | CG2127-RB | 250..981 | 748..17 | 3645 | 99.9 | Minus |
CG2127-RA | 1695 | CG2127-RA | 305..1036 | 748..17 | 3645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8369003..8369734 | 17..748 | 3645 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:34:17 has no hits.
BS14639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:41 Download gff for
BS14639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-PB | 139..870 | 17..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:52 Download gff for
BS14639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 305..1038 | 13..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:11 Download gff for
BS14639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 305..1038 | 13..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:11 Download gff for
BS14639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8369001..8369734 | 13..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:52 Download gff for
BS14639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4256506..4257239 | 13..748 | 99 | | Plus |
BS14639.5prime Sequence
778 bp (715 high quality bases) assembled on 2006-10-13
> BS14639.5prime
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTAT
BS14639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-PA | 918 | CG2127-RA | 1..762 | 17..778 | 3785 | 99.8 | Plus |
CG2127-PB | 870 | CG2127-RB | 1..714 | 65..778 | 3545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RA | 1695 | CG2127-RA | 119..880 | 17..778 | 3795 | 99.9 | Plus |
CG2127-RB | 1640 | CG2127-RB | 103..825 | 56..778 | 3600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8369159..8369920 | 778..17 | 3795 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:34:37 has no hits.
BS14639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:42 Download gff for
BS14639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:53 Download gff for
BS14639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..880 | 12..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:14 Download gff for
BS14639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..880 | 12..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:14 Download gff for
BS14639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8369159..8369925 | 12..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:53 Download gff for
BS14639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4256664..4257430 | 12..778 | 99 | | Minus |
BS14639.complete Sequence
950 bp assembled on 2006-11-01
GenBank Submission: FJ637736
> BS14639.complete
GAAGTTATCAGTCGACATGTTGCGAATGTTGCGTCAGAAATGTCGTTCCC
TCGTAGATCGGAGCATGCCGTGCCTGGAGTCTTTGGTAAATGCCTGTTCT
CTATTCAAGGTCGATTGGTCCAAGAATCTGAGCCAAATCAAAACCCCGGC
CGACTGCGTTGGCTCCAGTGTGCTCCGGCAGCACCTGTTACGCCGCAACT
ACAGCAGTCAGTCTTCCGCCGATGATTGCGGGCGGCCAAAGGATTGCGAT
CAGGTATCGACCTCCAAGGGCTGTGGTCCTGCTCGGTTCAAGGGCACCAT
TTGCGATGCAGTCAAGGGCGGTAAGCGCAAGAAGAAGGAAGAGCCCAAGA
AGGAAAAGTCCAACAAGCCAAAGCTGCCAGCAAAGATGAGGTCCATGTGG
TATATACCCGACTGCGAGTACGTGCCAAAGTGCGATGTGCCAGTGCGGTA
CGACATCCAGCACTACCGCATATCGGACAAAGAGGCCCGCCAGTACCAGG
TGACGTGGAACGAGTGCCCCCGGTTGGTGATCAAGCCCAAGAAGGTGTGC
ATCCACGCAAAGCGACCGCGTCCGAAGCCCTGCCGCCGTCAGCGGAAGAC
GGTGGTGGCCACAGCCCGTCCCACGATGCCCATGCTTAATCCCATGGAGT
GCAAGAAGGCAGAGGACTCCTCACCCTGTCCGCGCTGGACTCTTCCCTGC
TGCAAGCCCGCCCGTATTCCGCCCAGTTGCCACCGAGAACGCCGACCTAC
CGACTGTACCAAGCGCCCGGCGCCGTATCCCAGCTTCTCAGAATGCAAGC
GGGAGGAGCTCACTAACGCACCACCTACAGAGTGCCTATGCCTTCGAGTT
CCCATGGCCTGCGAGATGTGGGCGGAGCTGAGGCGAAGGATCGCCCGTGG
CAAGGGGGCAGTCCTTAAGTGTGGCGAAACGTAGAAGCTTTCTAGACCAT
BS14639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RA | 918 | CG2127-PA | 1..918 | 17..934 | 4575 | 99.9 | Plus |
CG2127-RB | 870 | CG2127-PB | 1..870 | 65..934 | 4335 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-RA | 1695 | CG2127-RA | 119..1036 | 17..934 | 4575 | 99.9 | Plus |
CG2127-RB | 1640 | CG2127-RB | 103..981 | 56..934 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8369003..8369920 | 934..17 | 4575 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:17 has no hits.
BS14639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:53 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:54 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..1038 | 12..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:21 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 124..1036 | 22..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:54 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 114..1038 | 12..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:51 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2127-RA | 124..1036 | 22..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:51 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8369003..8369915 | 22..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:21 Download gff for
BS14639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4256508..4257420 | 22..934 | 99 | | Minus |
BS14639.pep Sequence
Translation from 16 to 933
> BS14639.pep
MLRMLRQKCRSLVDRSMPCLESLVNACSLFKVDWSKNLSQIKTPADCVGS
SVLRQHLLRRNYSSQSSADDCGRPKDCDQVSTSKGCGPARFKGTICDAVK
GGKRKKKEEPKKEKSNKPKLPAKMRSMWYIPDCEYVPKCDVPVRYDIQHY
RISDKEARQYQVTWNECPRLVIKPKKVCIHAKRPRPKPCRRQRKTVVATA
RPTMPMLNPMECKKAEDSSPCPRWTLPCCKPARIPPSCHRERRPTDCTKR
PAPYPSFSECKREELTNAPPTECLCLRVPMACEMWAELRRRIARGKGAVL
KCGET*
BS14639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2127-PA | 305 | CG2127-PA | 1..305 | 1..305 | 1688 | 100 | Plus |
CG2127-PB | 289 | CG2127-PB | 1..289 | 17..305 | 1609 | 100 | Plus |
CG33340-PA | 229 | CG33340-PA | 23..224 | 80..291 | 338 | 38 | Plus |
CG8701-PA | 246 | CG8701-PA | 36..231 | 74..290 | 338 | 42.5 | Plus |
CG12860-PA | 316 | CG12860-PA | 66..304 | 59..292 | 274 | 31 | Plus |