Clone Sequence Records
BS14641.3prime Sequence
763 bp (623 high quality bases) assembled on 2006-10-13
> BS14641.3prime
ATGGTCTAGAAAGCTTTCACAGGTTTTCAGTTGGACACTTGAGCGGGGCC
GTGACCGACTTGCTGCAGGACACAAACTCCTTGCTGGGCTGCACACAGCT
TTTCTCGCGATTGTAGATGCCCAGAAAGGCGCGGCAATTGGCGCAGTACA
GGTACTCATTGTTGTCCGCGGACATGAGGCAGGGCAGGAAGCACAGAGGC
CAGCAGGAGACCACCCAGGCGGCACAGCAGCCGTTGTTCGAGATCTCAGT
GGCAGCCTTGATAAGCGGCCGCCTGCTGGTCGCGCAGCACGGACAAAAGA
TGCGCCCCTCCGCCGGTGCCCAGCGTTCGATGGAGGCGCGATAGCATTTC
CTCCGATGCGACGTCGAGTTCTCCAATGGACGTGAACATGGACATGGGGA
GCTGGGCTTCTCGGTTTTGTAGGAGGCGGCTTCACTGACGGCAGCAGGGT
CACCGGCGACAGATCCACCACTGCGACCATAATTCTTCTTTTTGGCCATA
TATTTCTCTGCCTTTTCGGCCATCTGGGACTCGGACAGACCCGTCATCTT
GCTAATCTTCGAGAGCCGCTCCTCACTGATGCCGTGATCCGCGGCCAGCT
TGTGCAGATTCTTGATTTTATCCGTGGTCACTGCGTATATCTCCGGATGA
TCCTGTTGGATGTGTCGCACCAGTTCACTGGTGTCGTAGCGGGAGCAACG
GATCACCTTCATGCAGTGCAAACAGCGCAGTGATTGCGTAACACTTGGTT
TCGGATTTGTCTG
BS14641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-PA | 753 | CG15708-RA | 7..753 | 763..17 | 3710 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 106..855 | 763..14 | 3735 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241024..16241511 | 14..501 | 2440 | 100 | Plus |
| 2R | 25286936 | 2R | 16241568..16241829 | 502..763 | 1295 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:14:37 has no hits.
BS14641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:43 Download gff for
BS14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-PA | 7..753 | 17..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:15 Download gff for
BS14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 106..864 | 6..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:40 Download gff for
BS14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 106..864 | 6..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:40 Download gff for
BS14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241015..16241511 | 6..501 | 99 | <- | Plus |
| 2R | 16241568..16241829 | 502..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:15 Download gff for
BS14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128520..12129016 | 6..501 | 99 | <- | Plus |
| arm_2R | 12129073..12129334 | 502..763 | 99 | | Plus |
BS14641.5prime Sequence
749 bp (746 high quality bases) assembled on 2006-10-13
> BS14641.5prime
GAAGTTATCAGTCGACATGTCCCAGACAAATCCGAAACCAAGTGATACGC
AATCACTGCGCTGTTTGCACTGCATGAAGGTGATCCGTTGCTCCCGCTAC
GACACCAGTGAACTGGTGCGACACATCCAACAGGATCATCCGGAGATATA
CGCAGTGACCACGGATAAAATCAAGAATCTGCACAAGCTGGCCGCGGATC
ACGGCATCAGTGAGGAGCGGCTCTCGAAGATTAGCAAGATGACGGGTCTG
TCCGAGTCCCAGATGGCCGAAAAGGCAGAGAAATATATGGCCAAAAAGAA
GAATTATGGTCGCAGTGGTGGATCTGTCGCCGGTGACCCTGCTGCCGTCA
GTGAAGCCGCCTCCTACAAAACCGAGAAGCCCAGCTCCCCATGTCCATGT
TCACGTCCATTGGAGAACTCGACGTCGCATCGGAGGAAATGCTATCGCGC
CTCCATCGAACGCTGGGCACCGGCGGAGGGGCGCATCTTTTGTCCGTGCT
GCGCGACCAGCAGGCGGCCGCTTATCAAGGCTGCCACTGAGATCTCGAAC
AACGGCTGCTGTGCCGCCTGGGTGGTCTCCTGCTGGCCTCTGTGCTTCCT
GCCCTGCCTCATGTCCGCGGACAACAATGAGTACCTGTACTGCGCCAATT
GCCGCGCCTTTCTGGGCATCTACAATCGCGAGAAAAGCTGTGTGCAGCCC
AGCAAGGAGTTTGTGTCCTGCAGCAAGTCGGTCACGGCCCCGCTCAAGT
BS14641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-PA | 753 | CG15708-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 99..832 | 16..749 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241047..16241511 | 749..285 | 2325 | 100 | Minus |
| 2R | 25286936 | 2R | 16241568..16241836 | 284..16 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:29 has no hits.
BS14641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:43 Download gff for
BS14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:01 Download gff for
BS14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..832 | 16..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:06 Download gff for
BS14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..832 | 16..749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:06 Download gff for
BS14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241047..16241511 | 285..749 | 100 | <- | Minus |
| 2R | 16241568..16241836 | 16..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:01 Download gff for
BS14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128552..12129016 | 285..749 | 100 | <- | Minus |
| arm_2R | 12129073..12129341 | 16..284 | 100 | | Minus |
BS14641.complete Sequence
785 bp assembled on 2006-11-01
GenBank Submission: FJ638862
> BS14641.complete
GAAGTTATCAGTCGACATGTCCCAGACAAATCCGAAACCAAGTGATACGC
AATCACTGCGCTGTTTGCACTGCATGAAGGTGATCCGTTGCTCCCGCTAC
GACACCAGTGAACTGGTGCGACACATCCAACAGGATCATCCGGAGATATA
CGCAGTGACCACGGATAAAATCAAGAATCTGCACAAGCTGGCCGCGGATC
ACGGCATCAGTGAGGAGCGGCTCTCGAAGATTAGCAAGATGACGGGTCTG
TCCGAGTCCCAGATGGCCGAAAAGGCAGAGAAATATATGGCCAAAAAGAA
GAATTATGGTCGCAGTGGTGGATCTGTCGCCGGTGACCCTGCTGCCGTCA
GTGAAGCCGCCTCCTACAAAACCGAGAAGCCCAGCTCCCCATGTCCATGT
TCACGTCCATTGGAGAACTCGACGTCGCATCGGAGGAAATGCTATCGCGC
CTCCATCGAACGCTGGGCACCGGCGGAGGGGCGCATCTTTTGTCCGTGCT
GCGCGACCAGCAGGCGGCCGCTTATCAAGGCTGCCACTGAGATCTCGAAC
AACGGCTGCTGTGCCGCCTGGGTGGTCTCCTGCTGGCCTCTGTGCTTCCT
GCCCTGCCTCATGTCCGCGGACAACAATGAGTACCTGTACTGCGCCAATT
GCCGCGCCTTTCTGGGCATCTACAATCGCGAGAAAAGCTGTGTGCAGCCC
AGCAAGGAGTTTGTGTCCTGCAGCAAGTCGGTCACGGCCCCGCTCAAGTG
TCCAACTGAAAACCTGTGAAAGCTTTCTAGACCAT
BS14641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 753 | CG15708-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-RA | 943 | CG15708-RA | 99..855 | 16..772 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16241024..16241511 | 772..285 | 2440 | 100 | Minus |
| 2R | 25286936 | 2R | 16241568..16241836 | 284..16 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:36:06 has no hits.
BS14641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:52 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:14 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..864 | 16..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:25 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 100..851 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:53 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 99..864 | 16..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:52 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15708-RA | 100..851 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:52 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16241028..16241511 | 285..768 | 100 | <- | Minus |
| 2R | 16241568..16241835 | 17..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:25 Download gff for
BS14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12128533..12129016 | 285..768 | 100 | <- | Minus |
| arm_2R | 12129073..12129340 | 17..284 | 100 | | Minus |
BS14641.pep Sequence
Translation from 16 to 768
> BS14641.pep
MSQTNPKPSDTQSLRCLHCMKVIRCSRYDTSELVRHIQQDHPEIYAVTTD
KIKNLHKLAADHGISEERLSKISKMTGLSESQMAEKAEKYMAKKKNYGRS
GGSVAGDPAAVSEAASYKTEKPSSPCPCSRPLENSTSHRRKCYRASIERW
APAEGRIFCPCCATSRRPLIKAATEISNNGCCAAWVVSCWPLCFLPCLMS
ADNNEYLYCANCRAFLGIYNREKSCVQPSKEFVSCSKSVTAPLKCPTENL
*
BS14641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15708-PA | 250 | CG15708-PA | 1..250 | 1..250 | 1354 | 100 | Plus |
| CG12684-PA | 231 | CG12684-PA | 10..228 | 12..230 | 379 | 33.5 | Plus |
