Clone Sequence Records
BS14643.3prime Sequence
680 bp (582 high quality bases) assembled on 2006-10-13
> BS14643.3prime
ATGGTCTAGAAAGCTTCTAAATGGAAGCCGCATTCTCGTGATCATTGGTA
GACAGCTGGCCGCCCTCTAAGGCACTGACAATCTCCTGACCGGATGCCTT
GCTGGCAACACTTTTGTTGGGCTTCGGGTTGGGTGGCTCCGGATCTGTGC
CACGTTCCATTTCATCGTGCTCATCCTTGACTGTCGGCTGAGGATCGGTA
TCGGGATCTTGGCTTACTGGTTGCAGTTCATGGACTTCTTCAGACTCGTT
ATCCTCTTTATTGGCATTGGTCTGCCCTAAAGCTGCGTTTTGGCGCTGGC
TCTTCTGCCGGTTGAACAGTATCTTCCAGTAGGATGAAATGGATGTCTTA
ATCGTGGGCTTTGCATTCGGCAACGGCTTATCCTGCTCCACGGGTTCGAC
CACCGAGCTCGAAGGATCTTGAACATCCTTATTGGCTCCCTTCATCCGGG
TAAAGAAGCGACTTATAGTGTTTGACTTTCCCAGGTCCTTGTTGTCCTGG
GAGGATGTCTCGTCGTCATCCTCCACTTGGTCGCGCATCATTGGCTTCTT
GCTGATCTTAAAGAAGCGCTTCAAGGAATTGGACTTTGGAGCGGGGGCCA
CCTCGGGACCTTCCCACAGACAGGCCCTCGGGGTCGGCAAGAGGAATATC
CTTGCAGACTGGACATGTCGACTGATAACT
BS14643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-PA | 648 | CG5217-RA | 1..648 | 666..17 | 3145 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-RA | 974 | CG5217-RA | 110..757 | 666..17 | 3185 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19247269..19247679 | 17..427 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 19247790..19248027 | 427..666 | 1085 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:21:14 has no hits.
BS14643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:45 Download gff for
BS14643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-PA | 1..648 | 17..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:57:35 Download gff for
BS14643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 119..773 | 11..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:41:00 Download gff for
BS14643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 110..764 | 11..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:41:00 Download gff for
BS14643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19247262..19247678 | 11..426 | 99 | <- | Plus |
3R | 19247790..19248027 | 427..666 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:57:35 Download gff for
BS14643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15072984..15073400 | 11..426 | 99 | <- | Plus |
arm_3R | 15073512..15073749 | 427..666 | 98 | | Plus |
BS14643.5prime Sequence
682 bp (553 high quality bases) assembled on 2006-10-13
> BS14643.5prime
GAAGTTATCAGTCGACATGTCCAGTCTGCAAGATATTCCGCTTGCCGACC
CCGAGGGCCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCC
AATTCCTTGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGA
CCAAGTGGAGGATGACAACGAGACATCCTCCCAGGACAACAAGGACCTGG
GAAAGTCAAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAAT
AAGGATGTTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGA
TAAGCCGTTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCT
ACTGGAAGATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCT
TTAGGGCAGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCA
TGAACTGCAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAG
TCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCC
AACCCGAAACCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGAT
TGTCAGTGCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATG
CGGCTTCCATTTAAAAGCTTTCTAGACCATTC
BS14643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-PA | 648 | CG5217-RA | 1..647 | 17..663 | 3185 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-RA | 974 | CG5217-RA | 110..756 | 17..663 | 3205 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19247270..19247679 | 663..254 | 2035 | 99.8 | Minus |
3R | 32079331 | 3R | 19247790..19248027 | 254..17 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:50:43 has no hits.
BS14643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:46 Download gff for
BS14643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-PA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:53:51 Download gff for
BS14643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 119..767 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:19:39 Download gff for
BS14643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 110..758 | 17..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:19:39 Download gff for
BS14643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19247268..19247678 | 255..668 | 99 | <- | Minus |
3R | 19247790..19248027 | 17..254 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:53:51 Download gff for
BS14643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15072990..15073400 | 255..668 | 99 | <- | Minus |
arm_3R | 15073512..15073749 | 17..254 | 99 | | Minus |
BS14643.complete Sequence
680 bp assembled on 2009-08-24
GenBank Submission: KX802557
> BS14643.complete
GAAGTTATCAGTCGACATGTCCAGTCTGCAAGATATTCCGCTTGCCGACC
CCGAGGGCCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCC
AATTCCTTGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGA
CCAAGTGGAGGATGACGACGAGACATCCTCCCAGGACAACAAGGACCTGG
GAAAGTCAAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAAT
AAGGATGTTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGA
TAAGCCGTTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCT
ACTGGAAGATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCT
TTAGGGCAGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCA
TGAACTGCAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAG
TCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCC
AACCCGAAGCCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGAT
TGTCAGTGCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATG
CGGCTTCCATTTAGAAGCTTTCTAGACCAT
BS14643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-RA | 648 | CG5217-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-RA | 974 | CG5217-RA | 110..757 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19247269..19247679 | 664..254 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 19247790..19248027 | 254..17 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:28:31 has no hits.
BS14643.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:48 Download gff for
BS14643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 119..766 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:40 Download gff for
BS14643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 119..766 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:25 Download gff for
BS14643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5217-RA | 110..757 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:25 Download gff for
BS14643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19247269..19247678 | 255..664 | 100 | <- | Minus |
3R | 19247790..19248027 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:40 Download gff for
BS14643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15072991..15073400 | 255..664 | 100 | <- | Minus |
arm_3R | 15073512..15073749 | 17..254 | 100 | | Minus |
BS14643.pep Sequence
Translation from 16 to 663
> BS14643.pep
MSSLQDIPLADPEGLSVEGPEVAPAPKSNSLKRFFKISKKPMMRDQVEDD
DETSSQDNKDLGKSNTISRFFTRMKGANKDVQDPSSSVVEPVEQDKPLPN
AKPTIKTSISSYWKILFNRQKSQRQNAALGQTNANKEDNESEEVHELQPV
SQDPDTDPQPTVKDEHDEMERGTDPEPPNPKPNKSVASKASGQEIVSALE
GGQLSTNDHENAASI*
BS14643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5217-PA | 215 | CG5217-PA | 1..215 | 1..215 | 1110 | 100 | Plus |