Clone BS14643 Report

Search the DGRC for BS14643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5217-RA
Protein status:BS14643.pep: full length peptide match
Sequenced Size:680

Clone Sequence Records

BS14643.3prime Sequence

680 bp (582 high quality bases) assembled on 2006-10-13

> BS14643.3prime
ATGGTCTAGAAAGCTTCTAAATGGAAGCCGCATTCTCGTGATCATTGGTA
GACAGCTGGCCGCCCTCTAAGGCACTGACAATCTCCTGACCGGATGCCTT
GCTGGCAACACTTTTGTTGGGCTTCGGGTTGGGTGGCTCCGGATCTGTGC
CACGTTCCATTTCATCGTGCTCATCCTTGACTGTCGGCTGAGGATCGGTA
TCGGGATCTTGGCTTACTGGTTGCAGTTCATGGACTTCTTCAGACTCGTT
ATCCTCTTTATTGGCATTGGTCTGCCCTAAAGCTGCGTTTTGGCGCTGGC
TCTTCTGCCGGTTGAACAGTATCTTCCAGTAGGATGAAATGGATGTCTTA
ATCGTGGGCTTTGCATTCGGCAACGGCTTATCCTGCTCCACGGGTTCGAC
CACCGAGCTCGAAGGATCTTGAACATCCTTATTGGCTCCCTTCATCCGGG
TAAAGAAGCGACTTATAGTGTTTGACTTTCCCAGGTCCTTGTTGTCCTGG
GAGGATGTCTCGTCGTCATCCTCCACTTGGTCGCGCATCATTGGCTTCTT
GCTGATCTTAAAGAAGCGCTTCAAGGAATTGGACTTTGGAGCGGGGGCCA
CCTCGGGACCTTCCCACAGACAGGCCCTCGGGGTCGGCAAGAGGAATATC
CTTGCAGACTGGACATGTCGACTGATAACT

BS14643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-PA 648 CG5217-RA 1..648 666..17 3145 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-RA 974 CG5217-RA 110..757 666..17 3185 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19247269..19247679 17..427 2055 100 Plus
3R 32079331 3R 19247790..19248027 427..666 1085 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 23:21:14 has no hits.

BS14643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:45 Download gff for BS14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5217-PA 1..648 17..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:57:35 Download gff for BS14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 119..773 11..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:41:00 Download gff for BS14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 110..764 11..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:41:00 Download gff for BS14643.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19247262..19247678 11..426 99 <- Plus
3R 19247790..19248027 427..666 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:57:35 Download gff for BS14643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15072984..15073400 11..426 99 <- Plus
arm_3R 15073512..15073749 427..666 98   Plus

BS14643.5prime Sequence

682 bp (553 high quality bases) assembled on 2006-10-13

> BS14643.5prime
GAAGTTATCAGTCGACATGTCCAGTCTGCAAGATATTCCGCTTGCCGACC
CCGAGGGCCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCC
AATTCCTTGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGA
CCAAGTGGAGGATGACAACGAGACATCCTCCCAGGACAACAAGGACCTGG
GAAAGTCAAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAAT
AAGGATGTTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGA
TAAGCCGTTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCT
ACTGGAAGATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCT
TTAGGGCAGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCA
TGAACTGCAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAG
TCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCC
AACCCGAAACCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGAT
TGTCAGTGCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATG
CGGCTTCCATTTAAAAGCTTTCTAGACCATTC

BS14643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-PA 648 CG5217-RA 1..647 17..663 3185 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-RA 974 CG5217-RA 110..756 17..663 3205 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19247270..19247679 663..254 2035 99.8 Minus
3R 32079331 3R 19247790..19248027 254..17 1175 99.6 Minus
Blast to na_te.dros performed on 2015-02-13 15:50:43 has no hits.

BS14643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:46 Download gff for BS14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5217-PA 1..648 17..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:53:51 Download gff for BS14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 119..767 17..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:19:39 Download gff for BS14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 110..758 17..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:19:39 Download gff for BS14643.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19247268..19247678 255..668 99 <- Minus
3R 19247790..19248027 17..254 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:53:51 Download gff for BS14643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15072990..15073400 255..668 99 <- Minus
arm_3R 15073512..15073749 17..254 99   Minus

BS14643.complete Sequence

680 bp assembled on 2009-08-24

GenBank Submission: KX802557

> BS14643.complete
GAAGTTATCAGTCGACATGTCCAGTCTGCAAGATATTCCGCTTGCCGACC
CCGAGGGCCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCC
AATTCCTTGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGA
CCAAGTGGAGGATGACGACGAGACATCCTCCCAGGACAACAAGGACCTGG
GAAAGTCAAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAAT
AAGGATGTTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGA
TAAGCCGTTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCT
ACTGGAAGATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCT
TTAGGGCAGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCA
TGAACTGCAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAG
TCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCC
AACCCGAAGCCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGAT
TGTCAGTGCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATG
CGGCTTCCATTTAGAAGCTTTCTAGACCAT

BS14643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-RA 648 CG5217-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-RA 974 CG5217-RA 110..757 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19247269..19247679 664..254 2055 100 Minus
3R 32079331 3R 19247790..19248027 254..17 1190 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:28:31 has no hits.

BS14643.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:48 Download gff for BS14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 119..766 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:40 Download gff for BS14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 119..766 17..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:25 Download gff for BS14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 110..757 17..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:25 Download gff for BS14643.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19247269..19247678 255..664 100 <- Minus
3R 19247790..19248027 17..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:40 Download gff for BS14643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15072991..15073400 255..664 100 <- Minus
arm_3R 15073512..15073749 17..254 100   Minus

BS14643.pep Sequence

Translation from 16 to 663

> BS14643.pep
MSSLQDIPLADPEGLSVEGPEVAPAPKSNSLKRFFKISKKPMMRDQVEDD
DETSSQDNKDLGKSNTISRFFTRMKGANKDVQDPSSSVVEPVEQDKPLPN
AKPTIKTSISSYWKILFNRQKSQRQNAALGQTNANKEDNESEEVHELQPV
SQDPDTDPQPTVKDEHDEMERGTDPEPPNPKPNKSVASKASGQEIVSALE
GGQLSTNDHENAASI*

BS14643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-PA 215 CG5217-PA 1..215 1..215 1110 100 Plus