Clone Sequence Records
BS14644.5prime Sequence
785 bp (747 high quality bases) assembled on 2006-10-13
> BS14644.5prime
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCCCCT
BS14644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32258-PA | 1356 | Gr64e-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG32258-PB | 1383 | Gr64e-RB | 114..792 | 103..781 | 3395 | 100 | Plus |
CG32258-PB | 1383 | Gr64e-RB | 1..86 | 17..102 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RA | 2882 | CG32258-RA | 1440..2210 | 15..785 | 3840 | 99.9 | Plus |
Gr64d-RA | 2882 | CG14987-RA | 1440..2210 | 15..785 | 3840 | 99.9 | Plus |
Gr64e-RB | 1468 | CG32258-RB | 114..796 | 103..785 | 3400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4034163..4034550 | 218..605 | 1940 | 100 | Plus |
3L | 28110227 | 3L | 4034610..4034790 | 605..785 | 890 | 99.4 | Plus |
3L | 28110227 | 3L | 4033765..4033852 | 15..102 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4034033..4034107 | 144..218 | 375 | 100 | Plus |
3L | 28110227 | 3L | 4033937..4033977 | 103..143 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:15:21 has no hits.
BS14644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:47 Download gff for
BS14644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32258-PA | 1..769 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:46 Download gff for
BS14644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1432..2210 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:56 Download gff for
BS14644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64d-RA | 1432..2210 | 10..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:56 Download gff for
BS14644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4034611..4034790 | 606..785 | 99 | | Plus |
3L | 4033759..4033852 | 11..102 | 95 | -> | Plus |
3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:46 Download gff for
BS14644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4033759..4033852 | 11..102 | 95 | -> | Plus |
arm_3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
arm_3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
arm_3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
arm_3L | 4034611..4034790 | 606..785 | 99 | | Plus |
BS14644.3prime Sequence
759 bp (758 high quality bases) assembled on 2006-10-13
> BS14644.3prime
ATGGTCTAGAAAGCTTTCAGTTTTCGAAACAGCCGGGCACCTTTTCCTCG
CCATTGAATTGCAGCAAAATGAGTTCGTAGGTCACAATTGTGCCGGCCAC
CGAAATGACAACGCCGCGTGTTAGCCGAAAGAATTTCATGCCAGTCAGAG
CCACATTGTCCATTTGGACCTCCTCCGAAAAGCGTTTTAGCTCATCGCAC
CAATATTCCCGGGGAACCAATCGAAAGATTACCAGTGGTCGCTTGGACTC
ATCATTTATACTGGAGCTGTACAGGGACAGGATGAGGGTGCGACCAAGTA
GGTAGACCAGCGAGAACCAGAAGTACAGGGCATGCCATATAGACGGCTTG
GCCTGCATACTCTTTAGGATCTTTCCGCAGATGAAGTACAGATTGTTGCT
GAAGCAGAGCAATGTAATGGTGGATATGGCATCGTCCACCTCTTCGCACA
GCTTGCAAAGGTTGCGAAAGTTAATCCTGCACTGCATCCAATAGTCCACA
GTGGTGGGCAATCTAGCCTCCCTCATCATGTAGTCATTAAGCTGACGAAA
GCGAGCAGCCAAAGCTACGCTAACTGCCATCACAAAGATGTCGTTAAAGT
TCCAGGCGAAGGTGCTCAGCACATTGACCACCTTGCCCACAATGCCCAGG
AAGCGTGTGTAGTCCACGAAGTAGAAGACCGAGGAGAAGCTCAAGTACAG
GAAACTGTCTATGGGACGATCTGGCCATCGGGGACAGGAGTTGACATAGT
AGCCCATGG
BS14644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32258-PA | 1356 | Gr64e-RA | 614..1356 | 759..17 | 3715 | 100 | Minus |
CG32258-PB | 1383 | Gr64e-RB | 641..1383 | 759..17 | 3715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RB | 1468 | CG32258-RB | 641..1384 | 759..16 | 3720 | 100 | Minus |
Gr64e-RA | 2882 | CG32258-RA | 2055..2798 | 759..16 | 3720 | 100 | Minus |
Gr64d-RA | 2882 | CG14987-RA | 2055..2798 | 759..16 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4034635..4034885 | 759..509 | 1255 | 100 | Minus |
3L | 28110227 | 3L | 4035165..4035327 | 353..191 | 815 | 100 | Minus |
3L | 28110227 | 3L | 4034943..4035099 | 509..353 | 785 | 100 | Minus |
3L | 28110227 | 3L | 4035383..4035476 | 192..99 | 470 | 100 | Minus |
3L | 28110227 | 3L | 4035534..4035619 | 101..16 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:31 has no hits.
BS14644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:46 Download gff for
BS14644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32258-PB | 641..1383 | 17..759 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:51 Download gff for
BS14644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 2055..2801 | 10..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:45 Download gff for
BS14644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64d-RA | 2055..2801 | 10..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:45 Download gff for
BS14644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4035535..4035622 | 10..100 | 96 | | Minus |
3L | 4034635..4034885 | 509..759 | 100 | -> | Minus |
3L | 4034944..4035098 | 354..508 | 100 | -> | Minus |
3L | 4035165..4035327 | 191..353 | 100 | -> | Minus |
3L | 4035385..4035474 | 101..190 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:51 Download gff for
BS14644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4034635..4034885 | 509..759 | 100 | -> | Minus |
arm_3L | 4034944..4035098 | 354..508 | 100 | -> | Minus |
arm_3L | 4035165..4035327 | 191..353 | 100 | -> | Minus |
arm_3L | 4035385..4035474 | 101..190 | 100 | -> | Minus |
arm_3L | 4035535..4035622 | 10..100 | 96 | | Minus |
BS14644.complete Sequence
1388 bp assembled on 2006-11-01
GenBank Submission: FJ637738
> BS14644.complete
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCGCCTGGAACTTTAACGACA
TCTTTGTGATGGCAGTTAGCGTAGCTTTGGCTGCTCGCTTTCGTCAGCTT
AATGACTACATGATGAGGGAGGCTAGATTGCCCACCACTGTGGACTATTG
GATGCAGTGCAGGATTAACTTTCGCAACCTTTGCAAGCTGTGCGAAGAGG
TGGACGATGCCATATCCACCATTACATTGCTCTGCTTCAGCAACAATCTG
TACTTCATCTGCGGAAAGATCCTAAAGAGTATGCAGGCCAAGCCGTCTAT
ATGGCATGCCCTGTACTTCTGGTTCTCGCTGGTCTACCTACTTGGTCGCA
CCCTCATCCTGTCCCTGTACAGCTCCAGTATAAATGATGAGTCCAAGCGA
CCACTGGTAATCTTTCGATTGGTTCCCCGGGAATATTGGTGCGATGAGCT
AAAACGCTTTTCGGAGGAGGTCCAAATGGACAATGTGGCTCTGACTGGCA
TGAAATTCTTTCGGCTAACACGCGGCGTTGTCATTTCGGTGGCCGGCACA
ATTGTGACCTACGAACTCATTTTGCTGCAATTCAATGGCGAGGAAAAGGT
GCCCGGCTGTTTCGAAAACTGAAAGCTTTCTAGACCAT
BS14644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RA | 1356 | CG32258-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Gr64e-RB | 1383 | CG32258-PB | 114..1383 | 103..1372 | 6350 | 100 | Plus |
Gr64e-RB | 1383 | CG32258-PB | 1..86 | 17..102 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-RA | 2882 | CG32258-RA | 1440..2798 | 15..1373 | 6795 | 100 | Plus |
Gr64d-RA | 2882 | CG14987-RA | 1440..2798 | 15..1373 | 6795 | 100 | Plus |
Gr64e-RB | 1468 | CG32258-RB | 114..1384 | 103..1373 | 6355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4034163..4034550 | 218..605 | 1940 | 100 | Plus |
3L | 28110227 | 3L | 4034610..4034885 | 605..880 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 4035165..4035327 | 1036..1198 | 815 | 100 | Plus |
3L | 28110227 | 3L | 4034943..4035099 | 880..1036 | 785 | 100 | Plus |
3L | 28110227 | 3L | 4035383..4035476 | 1197..1290 | 470 | 100 | Plus |
3L | 28110227 | 3L | 4033765..4033852 | 15..102 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4035534..4035619 | 1288..1373 | 430 | 100 | Plus |
3L | 28110227 | 3L | 4034033..4034107 | 144..218 | 375 | 100 | Plus |
3L | 28110227 | 3L | 4033937..4033977 | 103..143 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:10:36 has no hits.
BS14644.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:56 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1..1356 | 17..1372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:58 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1432..2801 | 10..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:42 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1442..2796 | 17..1371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:56 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64e-RA | 1432..2801 | 10..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:08 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr64d-RA | 1442..2796 | 17..1371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:08 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4035165..4035327 | 1036..1198 | 100 | -> | Plus |
3L | 4035385..4035474 | 1199..1288 | 100 | -> | Plus |
3L | 4035535..4035617 | 1289..1371 | 100 | | Plus |
3L | 4034611..4034885 | 606..880 | 100 | -> | Plus |
3L | 4034944..4035098 | 881..1035 | 100 | -> | Plus |
3L | 4033767..4033852 | 17..102 | 100 | -> | Plus |
3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:42 Download gff for
BS14644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4033767..4033852 | 17..102 | 100 | -> | Plus |
arm_3L | 4033937..4033977 | 103..143 | 100 | -> | Plus |
arm_3L | 4034033..4034107 | 144..218 | 100 | -> | Plus |
arm_3L | 4034164..4034550 | 219..605 | 100 | -> | Plus |
arm_3L | 4034611..4034885 | 606..880 | 100 | -> | Plus |
arm_3L | 4034944..4035098 | 881..1035 | 100 | -> | Plus |
arm_3L | 4035165..4035327 | 1036..1198 | 100 | -> | Plus |
arm_3L | 4035385..4035474 | 1199..1288 | 100 | -> | Plus |
arm_3L | 4035535..4035617 | 1289..1371 | 100 | | Plus |
BS14644.pep Sequence
Translation from 16 to 1371
> BS14644.pep
MARTTGDPAKRRRCMSRIKFWRRSRVGSEVVEKDTKRFKLSLIKAWLLRI
RQEDYKYSGSFQEAIKPVLIIAQIFALMPVRKVSSKFAEDLTFTWFSVRS
YYALVTILFFGVSSGYMVAFVTSVSFNFDSVETLVFYLSIFLISLSFFQL
ARKWPEIAQSWQLVEAKLPPLKLPKERRSLAQHINMITIVATTCSLVEHI
MSMLSMGYYVNSCPRWPDRPIDSFLYLSFSSVFYFVDYTRFLGIVGKVVN
VLSTFAWNFNDIFVMAVSVALAARFRQLNDYMMREARLPTTVDYWMQCRI
NFRNLCKLCEEVDDAISTITLLCFSNNLYFICGKILKSMQAKPSIWHALY
FWFSLVYLLGRTLILSLYSSSINDESKRPLVIFRLVPREYWCDELKRFSE
EVQMDNVALTGMKFFRLTRGVVISVAGTIVTYELILLQFNGEEKVPGCFE
N*
BS14644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr64e-PA | 451 | CG32258-PA | 1..451 | 1..451 | 2335 | 100 | Plus |
Gr64e-PB | 460 | CG32258-PB | 1..460 | 1..451 | 2312 | 97.8 | Plus |
Gr64f-PA | 469 | CG32255-PA | 63..463 | 47..448 | 910 | 43.8 | Plus |
Gr5a-PA | 444 | CG15779-PA | 7..438 | 11..448 | 756 | 37 | Plus |
Gr64a-PA | 456 | CG32261-PA | 59..450 | 61..447 | 535 | 29.9 | Plus |