Clone BS14644 Report

Search the DGRC for BS14644

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptGr64e-RA
Protein status:BS14644.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14644.5prime Sequence

785 bp (747 high quality bases) assembled on 2006-10-13

> BS14644.5prime
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCCCCT

BS14644.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32258-PA 1356 Gr64e-RA 1..765 17..781 3825 100 Plus
CG32258-PB 1383 Gr64e-RB 114..792 103..781 3395 100 Plus
CG32258-PB 1383 Gr64e-RB 1..86 17..102 430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RA 2882 CG32258-RA 1440..2210 15..785 3840 99.9 Plus
Gr64d-RA 2882 CG14987-RA 1440..2210 15..785 3840 99.9 Plus
Gr64e-RB 1468 CG32258-RB 114..796 103..785 3400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4034163..4034550 218..605 1940 100 Plus
3L 28110227 3L 4034610..4034790 605..785 890 99.4 Plus
3L 28110227 3L 4033765..4033852 15..102 440 100 Plus
3L 28110227 3L 4034033..4034107 144..218 375 100 Plus
3L 28110227 3L 4033937..4033977 103..143 205 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:15:21 has no hits.

BS14644.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:47 Download gff for BS14644.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32258-PA 1..769 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:46 Download gff for BS14644.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1432..2210 10..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:56 Download gff for BS14644.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr64d-RA 1432..2210 10..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:56 Download gff for BS14644.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4034611..4034790 606..785 99   Plus
3L 4033759..4033852 11..102 95 -> Plus
3L 4033937..4033977 103..143 100 -> Plus
3L 4034033..4034107 144..218 100 -> Plus
3L 4034164..4034550 219..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:46 Download gff for BS14644.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4033759..4033852 11..102 95 -> Plus
arm_3L 4033937..4033977 103..143 100 -> Plus
arm_3L 4034033..4034107 144..218 100 -> Plus
arm_3L 4034164..4034550 219..605 100 -> Plus
arm_3L 4034611..4034790 606..785 99   Plus

BS14644.3prime Sequence

759 bp (758 high quality bases) assembled on 2006-10-13

> BS14644.3prime
ATGGTCTAGAAAGCTTTCAGTTTTCGAAACAGCCGGGCACCTTTTCCTCG
CCATTGAATTGCAGCAAAATGAGTTCGTAGGTCACAATTGTGCCGGCCAC
CGAAATGACAACGCCGCGTGTTAGCCGAAAGAATTTCATGCCAGTCAGAG
CCACATTGTCCATTTGGACCTCCTCCGAAAAGCGTTTTAGCTCATCGCAC
CAATATTCCCGGGGAACCAATCGAAAGATTACCAGTGGTCGCTTGGACTC
ATCATTTATACTGGAGCTGTACAGGGACAGGATGAGGGTGCGACCAAGTA
GGTAGACCAGCGAGAACCAGAAGTACAGGGCATGCCATATAGACGGCTTG
GCCTGCATACTCTTTAGGATCTTTCCGCAGATGAAGTACAGATTGTTGCT
GAAGCAGAGCAATGTAATGGTGGATATGGCATCGTCCACCTCTTCGCACA
GCTTGCAAAGGTTGCGAAAGTTAATCCTGCACTGCATCCAATAGTCCACA
GTGGTGGGCAATCTAGCCTCCCTCATCATGTAGTCATTAAGCTGACGAAA
GCGAGCAGCCAAAGCTACGCTAACTGCCATCACAAAGATGTCGTTAAAGT
TCCAGGCGAAGGTGCTCAGCACATTGACCACCTTGCCCACAATGCCCAGG
AAGCGTGTGTAGTCCACGAAGTAGAAGACCGAGGAGAAGCTCAAGTACAG
GAAACTGTCTATGGGACGATCTGGCCATCGGGGACAGGAGTTGACATAGT
AGCCCATGG

BS14644.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32258-PA 1356 Gr64e-RA 614..1356 759..17 3715 100 Minus
CG32258-PB 1383 Gr64e-RB 641..1383 759..17 3715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RB 1468 CG32258-RB 641..1384 759..16 3720 100 Minus
Gr64e-RA 2882 CG32258-RA 2055..2798 759..16 3720 100 Minus
Gr64d-RA 2882 CG14987-RA 2055..2798 759..16 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4034635..4034885 759..509 1255 100 Minus
3L 28110227 3L 4035165..4035327 353..191 815 100 Minus
3L 28110227 3L 4034943..4035099 509..353 785 100 Minus
3L 28110227 3L 4035383..4035476 192..99 470 100 Minus
3L 28110227 3L 4035534..4035619 101..16 430 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:08:31 has no hits.

BS14644.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:46 Download gff for BS14644.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32258-PB 641..1383 17..759 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:51 Download gff for BS14644.3prime
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 2055..2801 10..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:45 Download gff for BS14644.3prime
Subject Subject Range Query Range Percent Splice Strand
Gr64d-RA 2055..2801 10..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:45 Download gff for BS14644.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4035535..4035622 10..100 96   Minus
3L 4034635..4034885 509..759 100 -> Minus
3L 4034944..4035098 354..508 100 -> Minus
3L 4035165..4035327 191..353 100 -> Minus
3L 4035385..4035474 101..190 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:51 Download gff for BS14644.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4034635..4034885 509..759 100 -> Minus
arm_3L 4034944..4035098 354..508 100 -> Minus
arm_3L 4035165..4035327 191..353 100 -> Minus
arm_3L 4035385..4035474 101..190 100 -> Minus
arm_3L 4035535..4035622 10..100 96   Minus

BS14644.complete Sequence

1388 bp assembled on 2006-11-01

GenBank Submission: FJ637738

> BS14644.complete
GAAGTTATCAGTCGACATGGCCAGGACCACTGGGGATCCTGCCAAGCGAC
GCAGGTGCATGTCTCGCATCAAGTTCTGGCGAAGATCGCGCGTGGGCAGC
GAAGTCGTTGAAAAAGATACAAAGCGATTTAAGCTTTCCTTGATAAAAGC
TTGGCTTCTTCGCATCAGACAGGAGGATTATAAGTACAGTGGATCTTTCC
AGGAAGCCATCAAGCCTGTCCTCATAATCGCGCAGATCTTTGCTTTGATG
CCAGTTCGAAAAGTGAGCTCCAAGTTCGCAGAAGACCTAACCTTCACCTG
GTTCAGCGTTCGATCCTATTACGCCCTGGTAACCATCCTGTTTTTTGGTG
TTAGCTCTGGATATATGGTGGCCTTTGTGACAAGTGTGTCCTTTAATTTT
GATTCGGTGGAGACCCTGGTCTTCTACTTGTCCATATTCCTTATCTCTTT
GTCGTTTTTTCAACTGGCCAGAAAGTGGCCAGAAATAGCTCAGTCATGGC
AGTTGGTGGAGGCCAAGTTGCCGCCTCTGAAGTTGCCCAAAGAGCGCAGA
TCCCTGGCGCAGCACATTAACATGATCACCATCGTGGCCACCACTTGCTC
GCTGGTGGAGCACATTATGAGCATGTTGTCCATGGGCTACTATGTCAACT
CCTGTCCCCGATGGCCAGATCGTCCCATAGACAGTTTCCTGTACTTGAGC
TTCTCCTCGGTCTTCTACTTCGTGGACTACACACGCTTCCTGGGCATTGT
GGGCAAGGTGGTCAATGTGCTGAGCACCTTCGCCTGGAACTTTAACGACA
TCTTTGTGATGGCAGTTAGCGTAGCTTTGGCTGCTCGCTTTCGTCAGCTT
AATGACTACATGATGAGGGAGGCTAGATTGCCCACCACTGTGGACTATTG
GATGCAGTGCAGGATTAACTTTCGCAACCTTTGCAAGCTGTGCGAAGAGG
TGGACGATGCCATATCCACCATTACATTGCTCTGCTTCAGCAACAATCTG
TACTTCATCTGCGGAAAGATCCTAAAGAGTATGCAGGCCAAGCCGTCTAT
ATGGCATGCCCTGTACTTCTGGTTCTCGCTGGTCTACCTACTTGGTCGCA
CCCTCATCCTGTCCCTGTACAGCTCCAGTATAAATGATGAGTCCAAGCGA
CCACTGGTAATCTTTCGATTGGTTCCCCGGGAATATTGGTGCGATGAGCT
AAAACGCTTTTCGGAGGAGGTCCAAATGGACAATGTGGCTCTGACTGGCA
TGAAATTCTTTCGGCTAACACGCGGCGTTGTCATTTCGGTGGCCGGCACA
ATTGTGACCTACGAACTCATTTTGCTGCAATTCAATGGCGAGGAAAAGGT
GCCCGGCTGTTTCGAAAACTGAAAGCTTTCTAGACCAT

BS14644.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RA 1356 CG32258-PA 1..1356 17..1372 6780 100 Plus
Gr64e-RB 1383 CG32258-PB 114..1383 103..1372 6350 100 Plus
Gr64e-RB 1383 CG32258-PB 1..86 17..102 430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-RA 2882 CG32258-RA 1440..2798 15..1373 6795 100 Plus
Gr64d-RA 2882 CG14987-RA 1440..2798 15..1373 6795 100 Plus
Gr64e-RB 1468 CG32258-RB 114..1384 103..1373 6355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4034163..4034550 218..605 1940 100 Plus
3L 28110227 3L 4034610..4034885 605..880 1380 100 Plus
3L 28110227 3L 4035165..4035327 1036..1198 815 100 Plus
3L 28110227 3L 4034943..4035099 880..1036 785 100 Plus
3L 28110227 3L 4035383..4035476 1197..1290 470 100 Plus
3L 28110227 3L 4033765..4033852 15..102 440 100 Plus
3L 28110227 3L 4035534..4035619 1288..1373 430 100 Plus
3L 28110227 3L 4034033..4034107 144..218 375 100 Plus
3L 28110227 3L 4033937..4033977 103..143 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:10:36 has no hits.

BS14644.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:56 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1..1356 17..1372 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:58 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1432..2801 10..1379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:42 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1442..2796 17..1371 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:56 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64e-RA 1432..2801 10..1379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:08 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
Gr64d-RA 1442..2796 17..1371 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:08 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4035165..4035327 1036..1198 100 -> Plus
3L 4035385..4035474 1199..1288 100 -> Plus
3L 4035535..4035617 1289..1371 100   Plus
3L 4034611..4034885 606..880 100 -> Plus
3L 4034944..4035098 881..1035 100 -> Plus
3L 4033767..4033852 17..102 100 -> Plus
3L 4033937..4033977 103..143 100 -> Plus
3L 4034033..4034107 144..218 100 -> Plus
3L 4034164..4034550 219..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:42 Download gff for BS14644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4033767..4033852 17..102 100 -> Plus
arm_3L 4033937..4033977 103..143 100 -> Plus
arm_3L 4034033..4034107 144..218 100 -> Plus
arm_3L 4034164..4034550 219..605 100 -> Plus
arm_3L 4034611..4034885 606..880 100 -> Plus
arm_3L 4034944..4035098 881..1035 100 -> Plus
arm_3L 4035165..4035327 1036..1198 100 -> Plus
arm_3L 4035385..4035474 1199..1288 100 -> Plus
arm_3L 4035535..4035617 1289..1371 100   Plus

BS14644.pep Sequence

Translation from 16 to 1371

> BS14644.pep
MARTTGDPAKRRRCMSRIKFWRRSRVGSEVVEKDTKRFKLSLIKAWLLRI
RQEDYKYSGSFQEAIKPVLIIAQIFALMPVRKVSSKFAEDLTFTWFSVRS
YYALVTILFFGVSSGYMVAFVTSVSFNFDSVETLVFYLSIFLISLSFFQL
ARKWPEIAQSWQLVEAKLPPLKLPKERRSLAQHINMITIVATTCSLVEHI
MSMLSMGYYVNSCPRWPDRPIDSFLYLSFSSVFYFVDYTRFLGIVGKVVN
VLSTFAWNFNDIFVMAVSVALAARFRQLNDYMMREARLPTTVDYWMQCRI
NFRNLCKLCEEVDDAISTITLLCFSNNLYFICGKILKSMQAKPSIWHALY
FWFSLVYLLGRTLILSLYSSSINDESKRPLVIFRLVPREYWCDELKRFSE
EVQMDNVALTGMKFFRLTRGVVISVAGTIVTYELILLQFNGEEKVPGCFE
N*

BS14644.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gr64e-PA 451 CG32258-PA 1..451 1..451 2335 100 Plus
Gr64e-PB 460 CG32258-PB 1..460 1..451 2312 97.8 Plus
Gr64f-PA 469 CG32255-PA 63..463 47..448 910 43.8 Plus
Gr5a-PA 444 CG15779-PA 7..438 11..448 756 37 Plus
Gr64a-PA 456 CG32261-PA 59..450 61..447 535 29.9 Plus