Clone Sequence Records
BS14648.3prime Sequence
720 bp (688 high quality bases) assembled on 2006-10-13
> BS14648.3prime
ATGGTCTAGAAAGCTTTTATTTTGGATTATTGCTCCTTGGAACGGTGAAC
GTTTCGGTGGCATCAGTTAGCTCGGTTAGCTCAGTGTTGCCAGTTCCATC
GGCGATTAGATTGGATTGACGCGGCGTGGTCGAGAATACGACTCCGAATC
GTTGAGCCTTCATCTTGATCTGGTCCAGTCGCCCATCGATTTCGGAGAAA
ATTTCCTCGCTTAAAACCTTCAACTCGGCGATCTCGTAGCGAAAGTCGTT
GATATGTCGAGCGATCAGGGCATGTCGTAGATATCGACGGCTATAGCGAA
AGCCACTGGACATATTCGTTTTGGTCACGAGCAGGGCCATCTTTTTGGTA
AGCTTGACGGCGGCCAAGGAGCGATGTCTCTGCTGGCAGTTGCTTAGATC
GTTGGCGCACTCCTCAGTCCAGGCCAAGTGGACGCGGTTCTGTCCCCGAA
TATCGGCAATTCGTCGCTCTAGACACGTCCACGTTTCGCCCAAACTGCGC
AACATATTCCGGAGGGCATCGTAGCGGCACAGGAGTTCGGTTAGTTGGCA
CTGAATGTGATGCTGGGCACGTTGAATGCACCGTATCTCCGATTGCTTCG
CATTCAGGCCACTGCAGGAGATCGGATCCTCTGGCATTACCGATGGTTGG
CTAATATCCTCCAATTGCTGATTCCTGCGGAGTTGACTACGCAATATATC
GATTCTTTTTCATATCTCGT
BS14648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15468-PA | 873 | SIP3-RA | 181..873 | 709..17 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 1200 | CG15468-RA | 389..1092 | 720..17 | 3490 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4960037..4960740 | 17..720 | 3490 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:49:52 has no hits.
BS14648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:50 Download gff for
BS14648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15468-PA | 170..873 | 17..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:14 Download gff for
BS14648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 389..1102 | 6..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:07 Download gff for
BS14648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 389..1102 | 6..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:07 Download gff for
BS14648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4960027..4960740 | 6..720 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:14 Download gff for
BS14648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4854060..4854773 | 6..720 | 99 | | Plus |
BS14648.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-10-13
> BS14648.5prime
GAAGTTATCAGTCGACATGATTTCGCCAGGCTATCAGAGGTTAGGCCCTT
CCTTGGATCGAGTACCAGATGATGAGGAAACCGACTCACAGGAGGAGGAG
ATGGAAATACTGCCATGCGGAATGGGCGAGGAGGGCATAACCACCGATGA
GGAGACAAAAACCCTGATTACCATTCAGGGTCTGGACGAGATATTGAAAA
GAATCGATATATTGCGTAGTCAACTCCGCAGGAATCAGCAATTGGAGGAT
ATTAGCCAACCATCGGTAATGCCAGAGGATCCGATCTCCTGCAGTGGCCT
GAATGCGAAGCAATCGGAGATACGGTGCATTCAACGTGCCCAGCATCACA
TTCAGTGCCAACTAACCGAACTCCTGTGCCGCTACGATGCCCTCCGGAAT
ATGTTGCGCAGTTTGGGCGAAACGTGGACGTGTCTAGAGCGACGAATTGC
CGATATTCGGGGACAGAACCGCGTCCACTTGGCCTGGACTGAGGAGTGCG
CCAACGATCTAAGCAACTGCCAGCAGAGACATCGCTCCTTGGCCGCCGTC
AAGCTTACCAAAAAGATGGCCCTGCTCGTGACCAAAACGAATATGTCCAG
TGGCTTTCGCTATAGCCGTCGATATCTACGACATGCCCTGATCGCTCGAC
ATATCAACGACTTTCGCTACGAGATCGCCGAGTTGAAGGTTTTAAGCGAG
GAAATTTTCTCCGAAATCGATGGGCGACTGG
BS14648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15468-PA | 873 | SIP3-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 1200 | CG15468-RA | 220..934 | 17..731 | 3575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4960195..4960909 | 731..17 | 3575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:29:58 has no hits.
BS14648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:50 Download gff for
BS14648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15468-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:14 Download gff for
BS14648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 215..934 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:52 Download gff for
BS14648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 215..934 | 10..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:52 Download gff for
BS14648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4960195..4960914 | 10..731 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:14 Download gff for
BS14648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4854228..4854947 | 10..731 | 99 | | Minus |
BS14648.complete Sequence
905 bp assembled on 2006-11-01
GenBank Submission: FJ637739
> BS14648.complete
GAAGTTATCAGTCGACATGATTTCGCCAGGCTATCAGAGGTTAGGCCCTT
CCTTGGATCGAGTACCAGATGATGAGGAAACCGACTCACAGGAGGAGGAG
ATGGAAATACTGCCATGCGGAATGGGCGAGGAGGGCATAACCACCGATGA
GGAGACAAAAACCCTGATTACCATTCAGGGTCTGGACGAGATATTGAAAA
GAATCGATATATTGCGTAGTCAACTCCGCAGGAATCAGCAATTGGAGGAT
ATTAGCCAACCATCGGTAATGCCAGAGGATCCGATCTCCTGCAGTGGCCT
GAATGCGAAGCAATCGGAGATACGGTGCATTCAACGTGCCCAGCATCACA
TTCAGTGCCAACTAACCGAACTCCTGTGCCGCTACGATGCCCTCCGGAAT
ATGTTGCGCAGTTTGGGCGAAACGTGGACGTGTCTAGAGCGACGAATTGC
CGATATTCGGGGACAGAACCGCGTCCACTTGGCCTGGACTGAGGAGTGCG
CCAACGATCTAAGCAACTGCCAGCAGAGACATCGCTCCTTGGCCGCCGTC
AAGCTTACCAAAAAGATGGCCCTGCTCGTGACCAAAACGAATATGTCCAG
TGGCTTTCGCTATAGCCGTCGATATCTACGACATGCCCTGATCGCTCGAC
ATATCAACGACTTTCGCTACGAGATCGCCGAGTTGAAGGTTTTAAGCGAG
GAAATTTTCTCCGAAATCGATGGGCGACTGGACCAGATCAAGATGAAGGC
TCAACGATTCGGAGTCGTATTCTCGACCACGCCGCGTCAATCCAATCTAA
TCGCCGATGGAACTGGCAACACTGAGCTAACCGAGCTAACTGATGCCACC
GAAACGTTCACCGTTCCAAGGAGCAATAATCCAAAATAAAAGCTTTCTAG
ACCAT
BS14648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 873 | CG15468-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 1200 | CG15468-RA | 220..1092 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4960037..4960909 | 889..17 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:43 has no hits.
BS14648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:57 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:59 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 87..974 | 10..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:35 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 220..1090 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:57 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 87..974 | 10..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:27 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 220..1090 | 17..887 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:27 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4960039..4960909 | 17..887 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:35 Download gff for
BS14648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4854072..4854942 | 17..887 | 100 | | Minus |
BS14648.pep Sequence
Translation from 16 to 888
> BS14648.pep
MISPGYQRLGPSLDRVPDDEETDSQEEEMEILPCGMGEEGITTDEETKTL
ITIQGLDEILKRIDILRSQLRRNQQLEDISQPSVMPEDPISCSGLNAKQS
EIRCIQRAQHHIQCQLTELLCRYDALRNMLRSLGETWTCLERRIADIRGQ
NRVHLAWTEECANDLSNCQQRHRSLAAVKLTKKMALLVTKTNMSSGFRYS
RRYLRHALIARHINDFRYEIAELKVLSEEIFSEIDGRLDQIKMKAQRFGV
VFSTTPRQSNLIADGTGNTELTELTDATETFTVPRSNNPK*
BS14648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-PA | 290 | CG15468-PA | 1..290 | 1..290 | 1494 | 100 | Plus |
| CG14556-PB | 334 | CG14556-PB | 119..301 | 66..248 | 194 | 25.8 | Plus |
