Clone BS14649 Report

Search the DGRC for BS14649

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptmtacp1-RB
Protein status:BS14649.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14649.3prime Sequence

462 bp (462 high quality bases) assembled on 2006-10-13

> BS14649.3prime
ATGGTCTAGAAAGCTTTTACTCGTACACATCCTCCTTGTCGGCGACGTAC
TTAATAATGTCGGCAGGTTTAAGCAGCTTCTCGGCATCAGAGTCGGGGAT
CTCGAAACCGAACTCGTCCTCCATGGCCATGATGACCTCCACGTGGTCCA
AGGAATCCAGTCCCAAGTCGTTGATGAAGTGCGACTCAACGTTGAGCTTT
TCGGCGGTCACTTTGTCGTAGGCGGAGACAACCTTTAGCACGCGGAACTT
GATGTCCTCGATGGTGCTCTTGGCCGAGTAGCTGCGCACACCGAACTTTT
GGCTCAACTGGCTGGTCATCGATGGCACGGCGATCCTGTGCATCATCCTG
GAGGCCTGTGATTGGATGAGAATGCCGGAGGCGACCCTCCTTGGGGCCAA
AGTGGCCGCCAGTCGACTGCAGCTGCGCGCGATCTGTGTGAACGACATGT
CGACTGATAACT

BS14649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9160-PB 432 mtacp1-RB 1..432 448..17 2160 100 Minus
CG9160-PA 459 mtacp1-RA 277..459 199..17 915 100 Minus
CG9160-PA 459 mtacp1-RA 1..150 448..299 750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 625 CG9160-RB 106..542 452..16 2170 99.8 Minus
mtacp1-RC 739 CG9160-RC 106..347 452..211 1195 99.6 Minus
mtacp1-RC 739 CG9160-RC 473..656 199..16 920 100 Minus
mtacp1-RA 740 CG9160-RA 386..569 199..16 920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331278..1331460 198..16 915 100 Minus
3L 28110227 3L 1330137..1330290 452..299 755 99.4 Minus
3L 28110227 3L 1330863..1330964 298..197 510 100 Minus
Blast to na_te.dros performed 2015-02-06 10:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 3462..3553 121..30 117 61.3 Minus

BS14649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:51 Download gff for BS14649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9160-PB 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:16 Download gff for BS14649.3prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 11..452 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:54 Download gff for BS14649.3prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 11..452 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:54 Download gff for BS14649.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1330137..1330290 299..452 99 -> Minus
3L 1330863..1330964 197..298 100 -> Minus
3L 1331280..1331462 11..196 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:16 Download gff for BS14649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1330137..1330290 299..452 99 -> Minus
arm_3L 1330863..1330964 197..298 100 -> Minus
arm_3L 1331280..1331462 11..196 98   Minus

BS14649.5prime Sequence

462 bp (462 high quality bases) assembled on 2006-10-13

> BS14649.5prime
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGTAAAA
GCTTTCTAGACC

BS14649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9160-PB 432 mtacp1-RB 1..432 17..448 2160 100 Plus
CG9160-PA 459 mtacp1-RA 277..459 266..448 915 100 Plus
CG9160-PA 459 mtacp1-RA 1..150 17..166 750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 625 CG9160-RB 106..542 13..449 2170 99.8 Plus
mtacp1-RC 739 CG9160-RC 106..347 13..254 1195 99.6 Plus
mtacp1-RC 739 CG9160-RC 473..656 266..449 920 100 Plus
mtacp1-RA 740 CG9160-RA 386..569 266..449 920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331278..1331460 267..449 915 100 Plus
3L 28110227 3L 1330137..1330290 13..166 755 99.4 Plus
3L 28110227 3L 1330863..1330964 167..268 510 100 Plus
Blast to na_te.dros performed 2015-02-12 17:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 3462..3553 344..435 117 61.3 Plus

BS14649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:51 Download gff for BS14649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9160-PB 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:17 Download gff for BS14649.5prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 13..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:37 Download gff for BS14649.5prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 13..454 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:37 Download gff for BS14649.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1330137..1330290 13..166 99 -> Plus
3L 1330863..1330964 167..268 100 -> Plus
3L 1331280..1331462 269..454 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:17 Download gff for BS14649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1330863..1330964 167..268 100 -> Plus
arm_3L 1330137..1330290 13..166 99 -> Plus
arm_3L 1331280..1331462 269..454 98   Plus

BS14649.complete Sequence

464 bp assembled on 2006-11-01

GenBank Submission: FJ637740

> BS14649.complete
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGTAAAA
GCTTTCTAGACCAT

BS14649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 432 CG9160-PB 1..432 17..448 2160 100 Plus
mtacp1-RC 546 CG9160-PC 1..238 17..254 1190 100 Plus
mtacp1-RC 546 CG9160-PC 364..546 266..448 915 100 Plus
mtacp1-RA 459 CG9160-PA 277..459 266..448 915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 625 CG9160-RB 106..542 13..449 2170 99.8 Plus
mtacp1-RC 739 CG9160-RC 106..347 13..254 1195 99.6 Plus
mtacp1-RC 739 CG9160-RC 473..656 266..449 920 100 Plus
mtacp1-RA 740 CG9160-RA 386..569 266..449 920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331278..1331460 267..449 915 100 Plus
3L 28110227 3L 1330137..1330290 13..166 755 99.4 Plus
3L 28110227 3L 1330863..1330964 167..268 510 100 Plus
Blast to na_te.dros performed 2014-11-27 15:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 3462..3553 344..435 117 61.3 Plus

BS14649.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:51 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:39 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 249..687 13..454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:17 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 110..539 17..446 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:51 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 249..687 13..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:27 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 110..539 17..446 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:27 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1330141..1330290 17..166 100 -> Plus
3L 1330863..1330964 167..268 100 -> Plus
3L 1331280..1331457 269..446 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:17 Download gff for BS14649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1330141..1330290 17..166 100 -> Plus
arm_3L 1330863..1330964 167..268 100 -> Plus
arm_3L 1331280..1331457 269..446 100   Plus

BS14649.pep Sequence

Translation from 16 to 447

> BS14649.pep
MSFTQIARSCSRLAATLAPRRVASGILIQSQASRMMHRIAVPSMTSQLSQ
KFGVRSYSAKSTIEDIKFRVLKVVSAYDKVTAEKLNVESHFINDLGLDSL
DHVEVIMAMEDEFGFEIPDSDAEKLLKPADIIKYVADKEDVYE*

BS14649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-PB 143 CG9160-PB 1..143 1..143 703 100 Plus
mtacp1-PC 181 CG9160-PC 1..181 1..143 637 76.8 Plus
mtacp1-PA 152 CG9160-PA 1..152 1..143 572 81.6 Plus