Clone Sequence Records
BS14649.3prime Sequence
462 bp (462 high quality bases) assembled on 2006-10-13
> BS14649.3prime
ATGGTCTAGAAAGCTTTTACTCGTACACATCCTCCTTGTCGGCGACGTAC
TTAATAATGTCGGCAGGTTTAAGCAGCTTCTCGGCATCAGAGTCGGGGAT
CTCGAAACCGAACTCGTCCTCCATGGCCATGATGACCTCCACGTGGTCCA
AGGAATCCAGTCCCAAGTCGTTGATGAAGTGCGACTCAACGTTGAGCTTT
TCGGCGGTCACTTTGTCGTAGGCGGAGACAACCTTTAGCACGCGGAACTT
GATGTCCTCGATGGTGCTCTTGGCCGAGTAGCTGCGCACACCGAACTTTT
GGCTCAACTGGCTGGTCATCGATGGCACGGCGATCCTGTGCATCATCCTG
GAGGCCTGTGATTGGATGAGAATGCCGGAGGCGACCCTCCTTGGGGCCAA
AGTGGCCGCCAGTCGACTGCAGCTGCGCGCGATCTGTGTGAACGACATGT
CGACTGATAACT
BS14649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9160-PB | 432 | mtacp1-RB | 1..432 | 448..17 | 2160 | 100 | Minus |
CG9160-PA | 459 | mtacp1-RA | 277..459 | 199..17 | 915 | 100 | Minus |
CG9160-PA | 459 | mtacp1-RA | 1..150 | 448..299 | 750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 625 | CG9160-RB | 106..542 | 452..16 | 2170 | 99.8 | Minus |
mtacp1-RC | 739 | CG9160-RC | 106..347 | 452..211 | 1195 | 99.6 | Minus |
mtacp1-RC | 739 | CG9160-RC | 473..656 | 199..16 | 920 | 100 | Minus |
mtacp1-RA | 740 | CG9160-RA | 386..569 | 199..16 | 920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331460 | 198..16 | 915 | 100 | Minus |
3L | 28110227 | 3L | 1330137..1330290 | 452..299 | 755 | 99.4 | Minus |
3L | 28110227 | 3L | 1330863..1330964 | 298..197 | 510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 10:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 121..30 | 117 | 61.3 | Minus |
BS14649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:51 Download gff for
BS14649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9160-PB | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:16 Download gff for
BS14649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 11..452 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:54 Download gff for
BS14649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 11..452 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:54 Download gff for
BS14649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1330137..1330290 | 299..452 | 99 | -> | Minus |
3L | 1330863..1330964 | 197..298 | 100 | -> | Minus |
3L | 1331280..1331462 | 11..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:16 Download gff for
BS14649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1330137..1330290 | 299..452 | 99 | -> | Minus |
arm_3L | 1330863..1330964 | 197..298 | 100 | -> | Minus |
arm_3L | 1331280..1331462 | 11..196 | 98 | | Minus |
BS14649.5prime Sequence
462 bp (462 high quality bases) assembled on 2006-10-13
> BS14649.5prime
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGTAAAA
GCTTTCTAGACC
BS14649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9160-PB | 432 | mtacp1-RB | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9160-PA | 459 | mtacp1-RA | 277..459 | 266..448 | 915 | 100 | Plus |
CG9160-PA | 459 | mtacp1-RA | 1..150 | 17..166 | 750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 625 | CG9160-RB | 106..542 | 13..449 | 2170 | 99.8 | Plus |
mtacp1-RC | 739 | CG9160-RC | 106..347 | 13..254 | 1195 | 99.6 | Plus |
mtacp1-RC | 739 | CG9160-RC | 473..656 | 266..449 | 920 | 100 | Plus |
mtacp1-RA | 740 | CG9160-RA | 386..569 | 266..449 | 920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331460 | 267..449 | 915 | 100 | Plus |
3L | 28110227 | 3L | 1330137..1330290 | 13..166 | 755 | 99.4 | Plus |
3L | 28110227 | 3L | 1330863..1330964 | 167..268 | 510 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 344..435 | 117 | 61.3 | Plus |
BS14649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:51 Download gff for
BS14649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9160-PB | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:17 Download gff for
BS14649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 13..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:37 Download gff for
BS14649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 13..454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:37 Download gff for
BS14649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1330137..1330290 | 13..166 | 99 | -> | Plus |
3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
3L | 1331280..1331462 | 269..454 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:17 Download gff for
BS14649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
arm_3L | 1330137..1330290 | 13..166 | 99 | -> | Plus |
arm_3L | 1331280..1331462 | 269..454 | 98 | | Plus |
BS14649.complete Sequence
464 bp assembled on 2006-11-01
GenBank Submission: FJ637740
> BS14649.complete
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGTAAAA
GCTTTCTAGACCAT
BS14649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 432 | CG9160-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
mtacp1-RC | 546 | CG9160-PC | 1..238 | 17..254 | 1190 | 100 | Plus |
mtacp1-RC | 546 | CG9160-PC | 364..546 | 266..448 | 915 | 100 | Plus |
mtacp1-RA | 459 | CG9160-PA | 277..459 | 266..448 | 915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 625 | CG9160-RB | 106..542 | 13..449 | 2170 | 99.8 | Plus |
mtacp1-RC | 739 | CG9160-RC | 106..347 | 13..254 | 1195 | 99.6 | Plus |
mtacp1-RC | 739 | CG9160-RC | 473..656 | 266..449 | 920 | 100 | Plus |
mtacp1-RA | 740 | CG9160-RA | 386..569 | 266..449 | 920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331460 | 267..449 | 915 | 100 | Plus |
3L | 28110227 | 3L | 1330137..1330290 | 13..166 | 755 | 99.4 | Plus |
3L | 28110227 | 3L | 1330863..1330964 | 167..268 | 510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 344..435 | 117 | 61.3 | Plus |
BS14649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:51 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:39 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 249..687 | 13..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:17 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 110..539 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:51 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 249..687 | 13..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:27 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 110..539 | 17..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:27 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1330141..1330290 | 17..166 | 100 | -> | Plus |
3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
3L | 1331280..1331457 | 269..446 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:17 Download gff for
BS14649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1330141..1330290 | 17..166 | 100 | -> | Plus |
arm_3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
arm_3L | 1331280..1331457 | 269..446 | 100 | | Plus |
BS14649.pep Sequence
Translation from 16 to 447
> BS14649.pep
MSFTQIARSCSRLAATLAPRRVASGILIQSQASRMMHRIAVPSMTSQLSQ
KFGVRSYSAKSTIEDIKFRVLKVVSAYDKVTAEKLNVESHFINDLGLDSL
DHVEVIMAMEDEFGFEIPDSDAEKLLKPADIIKYVADKEDVYE*
BS14649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-PB | 143 | CG9160-PB | 1..143 | 1..143 | 703 | 100 | Plus |
mtacp1-PC | 181 | CG9160-PC | 1..181 | 1..143 | 637 | 76.8 | Plus |
mtacp1-PA | 152 | CG9160-PA | 1..152 | 1..143 | 572 | 81.6 | Plus |