Clone Sequence Records
BS14650.3prime Sequence
722 bp (642 high quality bases) assembled on 2006-10-13
> BS14650.3prime
ATGGTCTAGAAAGCTTTTAGTCCGAATCTCGAGAACGCTTAGACACATGA
TGATCGTTCGTCCTCTCGCGACGCTTGTAGGGTGGTGGGGAAGATTTACG
CTTGTCCTTATACTGGGAGCCACTGGAGGTAGAACTCGAGCCTTTTTTCT
CGCGCTCCACGAACTTGACCGTCAGGGGCCGGGAGGCGCCTTCGATCATG
TACCGATCCATGCCGTACTTGGCCACCTCGGCGTCGCGGACCAACTCAAA
TTGCAAGAAGGCCACGCCACGGGACCTATTGTTGAACTTGTGGCGCAGCA
AGTTCACATCCACGATGTTGCCGTAGGTGGCGAAGAGTTCTCGTACCTTC
TTCTCATCCATGTACGTGGGCAGGTTCCCCACGTACAGGCTGGAGCTGGT
GCTTTCATATTCCGAAGGTCGGGCGAAGGCCACTTTCAGTCGCTTGCCGC
GAGTCTCGTAGCCATCCATGCCATTCACGGCAGCAGCCGCCTGGCGTTCC
GACACGTAGTCGACGAATCCGTAGCAACAGCTTATGCCAGTCCTGCGGTG
GCGGATGATCTTGGCCTTGCGGATCTCACCGAACTTGGAGAAGAGACGGT
GCAGCTCAGACTCCGTCATGTCCTGCGGAAGGTAGTTGAGGATCAGGTTC
GTCTTCATCCGCAAATTAGGGAGAGGAGGGGGCGGATCCACTGGTCTTCC
ATTTGGAACATGCCGCGTATCC
BS14650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-PA | 756 | CG5213-RA | 72..756 | 701..17 | 3425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-RA | 1019 | CG5213-RA | 250..956 | 722..17 | 3510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15494851..15495557 | 722..17 | 3485 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:45:30 has no hits.
BS14650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:51 Download gff for
BS14650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-PA | 50..756 | 17..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:23 Download gff for
BS14650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 250..961 | 10..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:14 Download gff for
BS14650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 250..961 | 10..722 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:14 Download gff for
BS14650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15494851..15495562 | 10..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:23 Download gff for
BS14650.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11320573..11321284 | 10..722 | 99 | | Minus |
BS14650.5prime Sequence
786 bp (759 high quality bases) assembled on 2006-10-13
> BS14650.5prime
GAAGTTATCAGTCGACATGACCAAGAAGGAGTCATCCGTCCCGACGCTAT
GTTGGGGATACGCCGGGATACGCGGCATGTTCCAAACTGGAAGACCAGTG
GATCCGCCCCCTCCTCTCCCTAATTTGCGGATGAAGACGAACCTGATCCT
CAACTACCTTCCGCAGGACATGACGGAGTCTGAGCTGCACCGTCTCTTCT
CCAAGTTCGGTGAGATCCGCAAGGCCAAGATCATCCGCCACCGCAGGACT
GGCATAAGCTGTTGCTACGGATTCGTCGACTACGTGTCGGAACGCCAGGC
GGCTGCTGCCGTGAATGGCATGGATGGCTACGAGACTCGCGGCAAGCGAC
TGAAAGTGGCCTTCGCCCGACCTTCGGAATATGAAAGCACCAGCTCCAGC
CTGTACGTGGGGAACCTGCCCACGTACATGGATGAGAAGAAGGTACGAGA
ACTCTTCGCCACCTACGGCAACATCGTGGATGTGAACTTGCTGCGCCACA
AGTTCAACAATAGGTCCCGTGGCGTGGCCTTCTTGCAATTTGAGTTGGTC
CGCGACGCCGAGGTGGCCAAGTACGGCATGGATCGGTACATGATCGAAGG
CGCCTCCCGGCCCCTGACGGTCAAGTTCGTGGAGCGCGAGAAAAAAGGCT
CGAGTTCTACCTCCAGTGGCTCCCAGTATAAGGACAAGCGTAAATCTTCC
CCACCACCCTACAAGCGTCGCGAGAGGACGAACGATCATCATGTGTCTAA
GCGTTCTCGAGATTCGGACTAAAAGCTTTCTAGACC
BS14650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-PA | 756 | CG5213-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-RA | 1019 | CG5213-RA | 201..956 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15494802..15495557 | 17..772 | 3780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:50:12 has no hits.
BS14650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:52 Download gff for
BS14650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:23 Download gff for
BS14650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 193..961 | 9..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:35 Download gff for
BS14650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 193..961 | 9..779 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:35 Download gff for
BS14650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15494794..15495562 | 9..779 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:23 Download gff for
BS14650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11320516..11321284 | 9..779 | 98 | | Plus |
BS14650.complete Sequence
788 bp assembled on 2006-11-01
GenBank Submission: FJ637741
> BS14650.complete
GAAGTTATCAGTCGACATGACCAAGAAGGAGTCATCCGTCCCGACGCTAT
GTTGGGGATACGCCGGGATACGCGGCATGTTCCAAACTGGAAGACCAGTG
GATCCGCCCCCTCCTCTCCCTAATTTGCGGATGAAGACGAACCTGATCCT
CAACTACCTTCCGCAGGACATGACGGAGTCTGAGCTGCACCGTCTCTTCT
CCAAGTTCGGTGAGATCCGCAAGGCCAAGATCATCCGCCACCGCAGGACT
GGCATAAGCTGTTGCTACGGATTCGTCGACTACGTGTCGGAACGCCAGGC
GGCTGCTGCCGTGAATGGCATGGATGGCTACGAGACTCGCGGCAAGCGAC
TGAAAGTGGCCTTCGCCCGACCTTCGGAATATGAAAGCACCAGCTCCAGC
CTGTACGTGGGGAACCTGCCCACGTACATGGATGAGAAGAAGGTACGAGA
ACTCTTCGCCACCTACGGCAACATCGTGGATGTGAACTTGCTGCGCCACA
AGTTCAACAATAGGTCCCGTGGCGTGGCCTTCTTGCAATTTGAGTTGGTC
CGCGACGCCGAGGTGGCCAAGTACGGCATGGATCGGTACATGATCGAAGG
CGCCTCCCGGCCCCTGACGGTCAAGTTCGTGGAGCGCGAGAAAAAAGGCT
CGAGTTCTACCTCCAGTGGCTCCCAGTATAAGGACAAGCGTAAATCTTCC
CCACCACCCTACAAGCGTCGCGAGAGGACGAACGATCATCATGTGTCTAA
GCGTTCTCGAGATTCGGACTAAAAGCTTTCTAGACCAT
BS14650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-RA | 756 | CG5213-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-RA | 1019 | CG5213-RA | 201..956 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15494802..15495557 | 17..772 | 3780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:09:14 has no hits.
BS14650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:58 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:01 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 193..961 | 9..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:03 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 201..954 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:59 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 193..961 | 9..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:36 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5213-RA | 201..954 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:36 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15494802..15495555 | 17..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:03 Download gff for
BS14650.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11320524..11321277 | 17..770 | 100 | | Plus |
BS14650.pep Sequence
Translation from 16 to 771
> BS14650.pep
MTKKESSVPTLCWGYAGIRGMFQTGRPVDPPPPLPNLRMKTNLILNYLPQ
DMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVN
GMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATY
GNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPL
TVKFVEREKKGSSSTSSGSQYKDKRKSSPPPYKRRERTNDHHVSKRSRDS
D*
BS14650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5213-PA | 251 | CG5213-PA | 1..251 | 1..251 | 1313 | 100 | Plus |
| Sxl-PE | 314 | CG43770-PE | 85..275 | 41..231 | 355 | 38.7 | Plus |
| Sxl-PA | 314 | CG43770-PA | 85..275 | 41..231 | 355 | 38.7 | Plus |
| Sxl-PAB | 322 | CG43770-PAB | 93..283 | 41..231 | 355 | 38.7 | Plus |
| Sxl-PAC | 331 | CG43770-PAC | 102..292 | 41..231 | 355 | 38.7 | Plus |
