Clone Sequence Records
BS14651.3prime Sequence
736 bp (635 high quality bases) assembled on 2006-10-13
> BS14651.3prime
ATGGTCTAGAAAGCTTTCAGTTGGTGCGCCCCCTCTTCAGCCAGAGTAAG
TGCCTCAGTTCCGCCCTCCTGCGCTCCCTGGTGGCCCTATGCCTGGCCTC
CTGGGCAGCACAGGCTGCCTTCTCGGCGGCGTTTTTGGTATTCTTGAAAT
CCACACGGGCCACCTCCAGCTGGCGGAGCAATAGCTCCACCCGCTTCTTG
GCCGCTTCCACAAGCTGTTGCTTCTCGCCCAGCTCCTGCTGAGCGCCACT
GGCCACGTGCTCCGAGTTGACCACATTATCCTGCGCATTCTTCACCGCCA
GCGTAATGGTGTTCAGCTGATCTGCCGCCTGTTTGGCCGCTTGCCCGGCC
GCAGCATAAGTAGTTTGGGTGGTCTGTAACAAGGTGCTCTCCTCCTGGAC
CACTAGCTCCCCCTCGCGCACCTCGGACTCCAGTTGCTCGACAATCTGTT
GCTTGCCGGCCAGAGCAGCTTCTGCCGCCTTGGCTGCGGCCAGCGCTTTG
TCGGCCAGTTGCTGCTTCACCTGGCGGGCAGCTGCCTCGCCAGCCTCTAT
CTGGGCATCGGATGCCTCCATGGCTTCCTTGGCCGCCTTCTGCGCAATGC
ATGAGGCCTTTACCCTGGTCTTTCCATTCATCTTGAAGTCGCACGGGGCA
CCGCCGGAGGATGACGACACACTGTTGTCGCCATCACCATGATGATCCGA
CATTAGAGCAGCTATCTCATTGGAGGACTGCGGCAA
BS14651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-PA | 786 | CG11694-RA | 67..786 | 736..17 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-RA | 935 | CG11694-RA | 136..856 | 736..16 | 3605 | 100 | Minus |
CG14354-RA | 1041 | CG14354-RA | 281..489 | 598..390 | 250 | 74.6 | Minus |
CG14840-RA | 1006 | CG14840-RA | 637..714 | 262..185 | 195 | 83.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8311282..8312002 | 16..736 | 3605 | 100 | Plus |
3R | 32079331 | 3R | 25815759..25815967 | 598..390 | 250 | 74.6 | Minus |
3R | 32079331 | 3R | 14260500..14260577 | 185..262 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:36:51 has no hits.
BS14651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:53 Download gff for
BS14651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-PA | 69..786 | 17..734 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:03 Download gff for
BS14651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 138..858 | 13..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:36 Download gff for
BS14651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 138..858 | 13..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:36 Download gff for
BS14651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8311280..8312000 | 13..734 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:03 Download gff for
BS14651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4137002..4137722 | 13..734 | 99 | | Plus |
BS14651.5prime Sequence
750 bp (680 high quality bases) assembled on 2006-10-13
> BS14651.5prime
GAAGTTATCAGTCGACATGGAGATAGCACGAATCGCATTTCTACTTTTCT
TCCTGTTCTCAGATCATTCTGCGGGCCACAAGTTGCCGCAGTCCTCCAAT
GAGATAGCTGCTCTAATGTCGGATCATCATGGTGATGGCGACAACAGTGT
GTCGTCATCCTCCGGCGGTGCCCCGTGCGACTTCAAGATGAATGGAAAGA
CCAGGGTAAAGGCCTCATGCATTGCGCAGAAGGCGGCCAAGGAAGCCATG
GAGGCATCCGATGCCCAGATAGAGGCTGGCGAGGCAGCTGCCCGCCAGGT
GAAGCAGCAACTGGCCGACAAAGCGCTGGCCGCAGCCAAGGCGGCAGAAG
CTGCTCTGGCCGGCAAGCAACAGATTGTCGAGCAACTGGAGTCCGAGGTG
CGCGAGGGGGAGCTAGTGGTCCAGGAGGAGAGCACCTTGTTACAGACCAC
CCAAACTACTTATGCTGCGGCCGGGCAAGCGGCCAAACAGGCGGCAGATC
AGCTGAACACCATTACGCTGGCGGTGAAGAATGCGCAGGATAATGTGGTC
AACTCGGAGCACGTGGCCAGTGGCGCTCAGCAGGAGCTGGGCGAGAAGCA
ACAGCTTGTGGAAGCGGCCAAGAAGCGGGTGGAGCTATTGCTCCGCCAGC
TGGAGGTGGCCCGTGTGGATTTCAAGAATACCAAAAACGCCGCCGAGAAG
GCAGCCTGTGCTGCCCAGAAGGCCAGGCATAGGGCCACCAGGGAACGCAA
BS14651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-PA | 786 | CG11694-RA | 1..728 | 17..744 | 3615 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-RA | 935 | CG11694-RA | 69..802 | 16..749 | 3640 | 99.7 | Plus |
CG14354-RA | 1041 | CG14354-RA | 281..489 | 221..429 | 250 | 74.6 | Plus |
CG14840-RA | 1006 | CG14840-RA | 637..714 | 557..634 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8311336..8312069 | 749..16 | 3640 | 99.7 | Minus |
3R | 32079331 | 3R | 25815759..25815967 | 221..429 | 250 | 74.6 | Plus |
3R | 32079331 | 3R | 14260500..14260577 | 634..557 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:39:01 has no hits.
BS14651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:53 Download gff for
BS14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:52 Download gff for
BS14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 62..801 | 10..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:28 Download gff for
BS14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 62..801 | 10..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:28 Download gff for
BS14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8311337..8312076 | 10..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:52 Download gff for
BS14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4137059..4137798 | 10..748 | 99 | | Minus |
BS14651.complete Sequence
818 bp assembled on 2006-11-01
GenBank Submission: FJ637742
> BS14651.complete
GAAGTTATCAGTCGACATGGAGATAGCACGAATCGCATTTCTACTTTTCT
TCCTGTTCTCAGATCATTCTGCGGGCCACAAGTTGCCGCAGTCCTCCAAT
GAGATAGCTGCTCTAATGTCGGATCATCATGGTGATGGCGACAACAGTGT
GTCGTCATCCTCCGGCGGTGCCCCGTGCGACTTCAAGATGAATGGAAAGA
CCAGGGTAAAGGCCTCATGCATTGCGCAGAAGGCGGCCAAGGAAGCCATG
GAGGCATCCGATGCCCAGATAGAGGCTGGCGAGGCAGCTGCCCGCCAGGT
GAAGCAGCAACTGGCCGACAAAGCGCTGGCCGCAGCCAAGGCGGCAGAAG
CTGCTCTGGCCGGCAAGCAACAGATTGTCGAGCAACTGGAGTCCGAGGTG
CGCGAGGGGGAGCTAGTGGTCCAGGAGGAGAGCACCTTGTTACAGACCAC
CCAAACTACTTATGCTGCGGCCGGGCAAGCGGCCAAACAGGCGGCAGATC
AGCTGAACACCATTACGCTGGCGGTGAAGAATGCGCAGGATAATGTGGTC
AACTCGGAGCACGTGGCCAGTGGCGCTCAGCAGGAGCTGGGCGAGAAGCA
ACAGCTTGTGGAAGCGGCCAAGAAGCGGGTGGAGCTATTGCTCCGCCAGC
TGGAGGTGGCCCGTGTGGATTTCAAGAATACCAAAAACGCCGCCGAGAAG
GCAGCCTGTGCTGCCCAGGAGGCCAGGCATAGGGCCACCAGGGAGCGCAG
GAGGGCGGAACTGAGGCACTTACTCTGGCTGAAGAGGGGGCGCACCAACT
GAAAGCTTTCTAGACCAT
BS14651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-RA | 786 | CG11694-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG14354-RA | 897 | CG14354-PA | 202..410 | 221..429 | 250 | 74.6 | Plus |
CG14840-RA | 903 | CG14840-PA | 607..684 | 557..634 | 195 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-RA | 935 | CG11694-RA | 69..856 | 16..803 | 3940 | 100 | Plus |
CG14354-RA | 1041 | CG14354-RA | 281..489 | 221..429 | 250 | 74.6 | Plus |
CG14840-RA | 1006 | CG14840-RA | 637..714 | 557..634 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8311282..8312069 | 803..16 | 3940 | 100 | Minus |
3R | 32079331 | 3R | 25815759..25815967 | 221..429 | 250 | 74.6 | Plus |
3R | 32079331 | 3R | 14260500..14260577 | 634..557 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:58:51 has no hits.
BS14651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:50 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:11 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 10..806 | 10..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:23 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 70..854 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:50 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 10..806 | 10..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:01 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11694-RA | 70..854 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:01 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8311284..8312068 | 17..801 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:23 Download gff for
BS14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4137006..4137790 | 17..801 | 100 | | Minus |
BS14651.pep Sequence
Translation from 16 to 801
> BS14651.pep
MEIARIAFLLFFLFSDHSAGHKLPQSSNEIAALMSDHHGDGDNSVSSSSG
GAPCDFKMNGKTRVKASCIAQKAAKEAMEASDAQIEAGEAAARQVKQQLA
DKALAAAKAAEAALAGKQQIVEQLESEVREGELVVQEESTLLQTTQTTYA
AAGQAAKQAADQLNTITLAVKNAQDNVVNSEHVASGAQQELGEKQQLVEA
AKKRVELLLRQLEVARVDFKNTKNAAEKAACAAQEARHRATRERRRAELR
HLLWLKRGRTN*
BS14651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11694-PA | 261 | CG11694-PA | 1..261 | 1..261 | 1277 | 100 | Plus |
CG14840-PA | 300 | CG14840-PA | 9..276 | 6..254 | 496 | 46.6 | Plus |
CG14354-PA | 298 | CG14354-PA | 11..247 | 17..248 | 494 | 49.8 | Plus |
CG34459-PC | 305 | CG34459-PC | 90..295 | 42..240 | 422 | 47.6 | Plus |
CG34459-PB | 305 | CG34459-PB | 90..295 | 42..240 | 422 | 47.6 | Plus |