Clone BS14652 Report

Search the DGRC for BS14652

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:146
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG9582-RA
Protein status:BS14652.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14652.3prime Sequence

829 bp (696 high quality bases) assembled on 2006-10-13

> BS14652.3prime
ATGGTCTAGAAAGCTTTTAAATATTTTGGCTCTTAAGGAATTCAAATAAA
TACTCGTAGGTCACCAGGAGCATGGCCCCACCAGGGCCGACACGCAGGAT
CATCGCCCCCAGACCCTTGAACAACGATCGAAAACCCTCCTCCTTGAAGG
TTGATTTAATCGTGCTTATGGTCCACTGGTACTTCACCTCGCCCTTCACT
GGCTGGGGTCCTTGAATCCTGCACTTGGCCATATCCAAAGTAACACTCAT
CACGCAAGCCAGGGAACTGGCCAACCCAGCTATGATGACCTTTCGCAGGA
TGTTGTATGTCTTATCCTCCGGGCTTGGAACAATGTCTTTAAGCGCATTG
TAAAAACCAAAGAATCCAAAGTGAAAGACGGCATTTCGAGCCACTAGTGC
AGTGATACCCCGATACAACCCTTTGATGCCATAGCCATCATGCTTGATTA
TGTACTTTACGACCGACAGTGTTTTCAAGCGTTTCCCCCGATGAGCCTGC
TGAGTGATCTTGACCACCTCAAAGGGATTGACGAGAAAGGACTCCAGAAT
TGCGGCCATTGAACCGGACATGGCGTGGGTCAGCGGAGTTGGTTGAGGGG
CTCCAAACTGGAAGTACGGTTTAAGGCTCTCGTACATCANAAACTTGCCG
CCCCTCTTTGGAGTTTCCACGCAGATCGGGGGCACAATACCCTTCCATAG
GGAAGACAACCCTTCGTAGCGATATATTTTGACGATGGCATCCAGAGGAC
AGGTGTAAACAACCTCGCCGCCAAATGGATGGGCACCCTGTATCTGCATC
CGGGTCTTAACCACATCGAGGGGATGAAA

BS14652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PA 903 CG9582-RA 91..903 829..17 4046 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 1287 CG9582-RB 331..1143 829..17 4054 99.9 Minus
CG9582-RA 983 CG9582-RA 157..969 829..17 4054 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024464..9025276 17..829 4054 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:09:37 has no hits.

BS14652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:53 Download gff for BS14652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-PA 94..903 17..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:04 Download gff for BS14652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 160..979 7..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:06 Download gff for BS14652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 160..979 7..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:06 Download gff for BS14652.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9024454..9025273 7..826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:04 Download gff for BS14652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024454..9025273 7..826 99   Plus

BS14652.5prime Sequence

798 bp (740 high quality bases) assembled on 2006-10-13

> BS14652.5prime
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTTAATCAACCTTCAGGGAGGA

BS14652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PA 903 CG9582-RA 1..782 17..798 3835 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 1287 CG9582-RB 241..1022 17..798 3865 99.6 Plus
CG9582-RA 983 CG9582-RA 67..848 17..798 3865 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024585..9025366 798..17 3865 99.6 Minus
Blast to na_te.dros performed on 2015-02-03 06:45:53 has no hits.

BS14652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:54 Download gff for BS14652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-PA 1..781 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:28 Download gff for BS14652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 62..847 11..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:18 Download gff for BS14652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 62..847 11..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:18 Download gff for BS14652.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9024586..9025371 11..797 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:28 Download gff for BS14652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024586..9025371 11..797 99   Minus

BS14652.complete Sequence

935 bp assembled on 2006-11-01

GenBank Submission: FJ637743

> BS14652.complete
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTAAATCAACCTTCAAGGAGGAGG
GTTTTCGATCGTTGTTCAAGGGTCTGGGGGCGATGATCCTGCGTGTCGGC
CCTGGTGGGGCCATGCTCCTGGTGACCTACGAGTATTTATTTGAATTCCT
TAAGAGCCAAAATATTTAAAAGCTTTCTAGACCAT

BS14652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 903 CG9582-PB 1..903 17..919 4500 99.9 Plus
CG9582-RA 903 CG9582-PA 1..903 17..919 4500 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 1287 CG9582-RB 241..1143 17..919 4500 99.9 Plus
CG9582-RA 983 CG9582-RA 67..969 17..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024464..9025366 919..17 4500 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 07:49:09 has no hits.

BS14652.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:16 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:08 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 34..951 11..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:45 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 67..967 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:16 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 34..951 11..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:16 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 67..967 17..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:16 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9024466..9025366 17..917 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:45 Download gff for BS14652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024466..9025366 17..917 99   Minus

BS14652.pep Sequence

Translation from 16 to 918

> BS14652.pep
MATRSEETVRSLAHWQFLAGGLSGFIEIICFHPLDVVKTRMQIQGAHPFG
GEVVYTCPLDAIVKIYRYEGLSSLWKGIVPPICVETPKRGGKFLMYESLK
PYFQFGAPQPTPLTHAMSGSMAAILESFLVNPFEVVKITQQAHRGKRLKT
LSVVKYIIKHDGYGIKGLYRGITALVARNAVFHFGFFGFYNALKDIVPSP
EDKTYNILRKVIIAGLASSLACVMSVTLDMAKCRIQGPQPVKGEVKYQWT
ISTIKSTFKEEGFRSLFKGLGAMILRVGPGGAMLLVTYEYLFEFLKSQNI
*

BS14652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PB 300 CG9582-PB 1..300 1..300 1563 100 Plus
CG9582-PA 300 CG9582-PA 1..300 1..300 1563 100 Plus
CG5254-PA 306 CG5254-PA 14..301 13..295 770 52.1 Plus
CG5254-PB 237 CG5254-PB 1..232 65..295 666 53.4 Plus
aralar1-PB 679 CG2139-PB 328..600 15..291 270 28 Plus