Clone Sequence Records
BS14652.3prime Sequence
829 bp (696 high quality bases) assembled on 2006-10-13
> BS14652.3prime
ATGGTCTAGAAAGCTTTTAAATATTTTGGCTCTTAAGGAATTCAAATAAA
TACTCGTAGGTCACCAGGAGCATGGCCCCACCAGGGCCGACACGCAGGAT
CATCGCCCCCAGACCCTTGAACAACGATCGAAAACCCTCCTCCTTGAAGG
TTGATTTAATCGTGCTTATGGTCCACTGGTACTTCACCTCGCCCTTCACT
GGCTGGGGTCCTTGAATCCTGCACTTGGCCATATCCAAAGTAACACTCAT
CACGCAAGCCAGGGAACTGGCCAACCCAGCTATGATGACCTTTCGCAGGA
TGTTGTATGTCTTATCCTCCGGGCTTGGAACAATGTCTTTAAGCGCATTG
TAAAAACCAAAGAATCCAAAGTGAAAGACGGCATTTCGAGCCACTAGTGC
AGTGATACCCCGATACAACCCTTTGATGCCATAGCCATCATGCTTGATTA
TGTACTTTACGACCGACAGTGTTTTCAAGCGTTTCCCCCGATGAGCCTGC
TGAGTGATCTTGACCACCTCAAAGGGATTGACGAGAAAGGACTCCAGAAT
TGCGGCCATTGAACCGGACATGGCGTGGGTCAGCGGAGTTGGTTGAGGGG
CTCCAAACTGGAAGTACGGTTTAAGGCTCTCGTACATCANAAACTTGCCG
CCCCTCTTTGGAGTTTCCACGCAGATCGGGGGCACAATACCCTTCCATAG
GGAAGACAACCCTTCGTAGCGATATATTTTGACGATGGCATCCAGAGGAC
AGGTGTAAACAACCTCGCCGCCAAATGGATGGGCACCCTGTATCTGCATC
CGGGTCTTAACCACATCGAGGGGATGAAA
BS14652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-PA | 903 | CG9582-RA | 91..903 | 829..17 | 4046 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 1287 | CG9582-RB | 331..1143 | 829..17 | 4054 | 99.9 | Minus |
CG9582-RA | 983 | CG9582-RA | 157..969 | 829..17 | 4054 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9024464..9025276 | 17..829 | 4054 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:09:37 has no hits.
BS14652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:53 Download gff for
BS14652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-PA | 94..903 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:04 Download gff for
BS14652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 160..979 | 7..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:06 Download gff for
BS14652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 160..979 | 7..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:06 Download gff for
BS14652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9024454..9025273 | 7..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:04 Download gff for
BS14652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9024454..9025273 | 7..826 | 99 | | Plus |
BS14652.5prime Sequence
798 bp (740 high quality bases) assembled on 2006-10-13
> BS14652.5prime
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTTAATCAACCTTCAGGGAGGA
BS14652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-PA | 903 | CG9582-RA | 1..782 | 17..798 | 3835 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 1287 | CG9582-RB | 241..1022 | 17..798 | 3865 | 99.6 | Plus |
CG9582-RA | 983 | CG9582-RA | 67..848 | 17..798 | 3865 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9024585..9025366 | 798..17 | 3865 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:45:53 has no hits.
BS14652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:54:54 Download gff for
BS14652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-PA | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:28 Download gff for
BS14652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 62..847 | 11..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:18 Download gff for
BS14652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 62..847 | 11..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:18 Download gff for
BS14652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9024586..9025371 | 11..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:28 Download gff for
BS14652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9024586..9025371 | 11..797 | 99 | | Minus |
BS14652.complete Sequence
935 bp assembled on 2006-11-01
GenBank Submission: FJ637743
> BS14652.complete
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTAAATCAACCTTCAAGGAGGAGG
GTTTTCGATCGTTGTTCAAGGGTCTGGGGGCGATGATCCTGCGTGTCGGC
CCTGGTGGGGCCATGCTCCTGGTGACCTACGAGTATTTATTTGAATTCCT
TAAGAGCCAAAATATTTAAAAGCTTTCTAGACCAT
BS14652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 903 | CG9582-PB | 1..903 | 17..919 | 4500 | 99.9 | Plus |
CG9582-RA | 903 | CG9582-PA | 1..903 | 17..919 | 4500 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 1287 | CG9582-RB | 241..1143 | 17..919 | 4500 | 99.9 | Plus |
CG9582-RA | 983 | CG9582-RA | 67..969 | 17..919 | 4500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9024464..9025366 | 919..17 | 4500 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:49:09 has no hits.
BS14652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:16 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:08 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 34..951 | 11..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:45 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 67..967 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:16 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 34..951 | 11..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:16 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 67..967 | 17..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:16 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9024466..9025366 | 17..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:45 Download gff for
BS14652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9024466..9025366 | 17..917 | 99 | | Minus |
BS14652.pep Sequence
Translation from 16 to 918
> BS14652.pep
MATRSEETVRSLAHWQFLAGGLSGFIEIICFHPLDVVKTRMQIQGAHPFG
GEVVYTCPLDAIVKIYRYEGLSSLWKGIVPPICVETPKRGGKFLMYESLK
PYFQFGAPQPTPLTHAMSGSMAAILESFLVNPFEVVKITQQAHRGKRLKT
LSVVKYIIKHDGYGIKGLYRGITALVARNAVFHFGFFGFYNALKDIVPSP
EDKTYNILRKVIIAGLASSLACVMSVTLDMAKCRIQGPQPVKGEVKYQWT
ISTIKSTFKEEGFRSLFKGLGAMILRVGPGGAMLLVTYEYLFEFLKSQNI
*
BS14652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-PB | 300 | CG9582-PB | 1..300 | 1..300 | 1563 | 100 | Plus |
CG9582-PA | 300 | CG9582-PA | 1..300 | 1..300 | 1563 | 100 | Plus |
CG5254-PA | 306 | CG5254-PA | 14..301 | 13..295 | 770 | 52.1 | Plus |
CG5254-PB | 237 | CG5254-PB | 1..232 | 65..295 | 666 | 53.4 | Plus |
aralar1-PB | 679 | CG2139-PB | 328..600 | 15..291 | 270 | 28 | Plus |